Wall clock time and date at job start Fri Apr 10 2020 20:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36203 * 117.00036 * 2 1 4 4 C 1.34080 * 122.50549 * 0.02986 * 3 2 1 5 5 S 1.70602 * 110.97927 * 180.02562 * 4 3 2 6 6 C 1.75815 * 91.61979 * 359.97438 * 5 4 3 7 7 C 1.46545 * 125.42690 * 179.97438 * 6 5 4 8 8 O 1.21705 * 120.00042 * 179.97438 * 7 6 5 9 9 N 1.34778 * 119.99563 * 359.97438 * 7 6 5 10 10 C 1.47020 * 125.65252 * 359.69205 * 9 7 6 11 11 C 1.54337 * 107.26749 * 178.85302 * 10 9 7 12 12 C 1.55163 * 103.01879 * 338.13641 * 11 10 9 13 13 O 1.42899 * 111.00275 * 277.23673 * 12 11 10 14 14 C 1.50698 * 111.00357 * 153.38426 * 12 11 10 15 15 H 1.07997 * 119.99862 * 6.34870 * 14 12 11 16 16 C 1.37876 * 119.99774 * 186.35418 * 14 12 11 17 17 N 1.31514 * 120.00338 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99710 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47462 * 89.99962 * 18 16 14 20 20 H 1.48506 * 109.47184 * 209.99431 * 18 16 14 21 21 H 1.48499 * 109.47385 * 329.99620 * 18 16 14 22 22 C 1.47431 * 125.64530 * 179.97438 * 9 7 6 23 23 C 1.36745 * 109.14532 * 359.74067 * 6 5 4 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99702 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99823 * 1 2 3 27 27 H 1.08004 * 124.50988 * 359.97438 * 4 3 2 28 28 H 1.09007 * 109.87795 * 298.39176 * 10 9 7 29 29 H 1.08996 * 109.88411 * 59.55741 * 10 9 7 30 30 H 1.09000 * 110.84774 * 219.67308 * 11 10 9 31 31 H 1.08999 * 110.67269 * 96.51863 * 11 10 9 32 32 H 0.96701 * 113.99753 * 173.65099 * 13 12 11 33 33 H 0.96998 * 120.00244 * 180.02562 * 17 16 14 34 34 H 1.08993 * 110.36570 * 322.93422 * 22 9 7 35 35 H 1.09008 * 110.36190 * 85.14030 * 22 9 7 36 36 H 1.07997 * 123.36864 * 180.23606 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3670 2.3689 0.0006 5 16 2.4296 3.7036 -0.0003 6 6 3.8355 2.6478 -0.0007 7 6 5.2318 3.0925 -0.0021 8 8 6.1315 2.2729 -0.0018 9 7 5.5196 4.4092 -0.0036 10 6 4.5355 5.5014 -0.0106 11 6 5.3234 6.8282 0.0196 12 6 6.6970 6.4057 0.6048 13 8 6.6491 6.3454 2.0317 14 6 7.7900 7.3343 0.1419 15 1 7.5425 8.2184 -0.4268 16 6 9.1058 7.0549 0.4443 17 7 9.4071 5.9785 1.1372 18 14 10.4606 8.2056 -0.1301 19 1 10.7020 9.2422 0.9056 20 1 11.7071 7.4299 -0.3538 21 1 10.0501 8.8594 -1.3986 22 6 6.8735 4.9927 -0.0046 23 6 3.4183 1.3455 0.0057 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2896 2.4445 0.0007 28 1 3.9295 5.4485 -0.9151 29 1 3.8975 5.4312 0.8703 30 1 4.8348 7.5548 0.6687 31 1 5.4401 7.2294 -0.9871 32 1 7.4530 5.9931 2.4376 33 1 10.3329 5.7822 1.3503 34 1 7.5447 4.3948 0.6119 35 1 7.2559 5.0622 -1.0230 36 1 4.0961 0.5047 0.0105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844016607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:29:12 Heat of formation + Delta-G solvation = -102.412242 kcal Electronic energy + Delta-G solvation = -21806.588749 eV Core-core repulsion = 18382.311012 eV Total energy + Delta-G solvation = -3424.277737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22412 -40.65684 -38.99085 -36.76857 -36.12921 -34.22784 -32.10305 -30.71530 -29.46181 -28.75541 -27.27156 -25.37036 -23.91880 -21.92582 -21.47351 -20.08061 -19.40124 -18.98593 -18.07769 -17.34209 -17.18882 -16.96357 -16.61189 -16.51710 -16.00285 -15.43106 -15.01243 -14.83349 -14.71847 -14.23043 -13.84280 -13.80883 -13.61113 -13.47920 -13.28798 -12.85224 -12.72047 -12.54285 -12.38036 -12.23841 -12.16734 -11.85563 -11.79162 -11.26935 -11.17441 -10.66007 -10.33982 -10.06921 -9.51969 -9.01406 -8.24008 -6.41199 -0.62145 0.40246 0.91181 1.31298 1.43600 1.46047 1.55373 1.84939 2.06731 2.39015 2.50662 3.02223 3.50203 3.72156 3.93102 4.06974 4.12830 4.14843 4.26572 4.41296 4.43470 4.49934 4.61843 4.70908 4.75972 4.82759 5.02002 5.03288 5.04615 5.23080 5.36453 5.46047 5.75838 6.06329 6.27798 6.47833 6.67786 6.98084 7.26997 7.35589 8.81291 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.039294 B = 0.003711 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.400873 B = 7543.327858 C = 7958.607934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.087 3.913 4 C -0.341 4.341 5 S 0.305 5.695 6 C -0.265 4.265 7 C 0.586 3.414 8 O -0.587 6.587 9 N -0.607 5.607 10 C 0.089 3.911 11 C -0.106 4.106 12 C 0.233 3.767 13 O -0.586 6.586 14 C -0.554 4.554 15 H 0.073 0.927 16 C 0.026 3.974 17 N -0.916 5.916 18 Si 0.964 3.036 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.263 1.263 22 C 0.109 3.891 23 C -0.082 4.082 24 H 0.118 0.882 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.203 0.797 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.373 0.627 33 H 0.269 0.731 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.948 -3.985 -3.308 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.244 6.244 3 C 0.031 3.969 4 C -0.479 4.479 5 S 0.573 5.427 6 C -0.385 4.385 7 C 0.375 3.625 8 O -0.471 6.471 9 N -0.338 5.338 10 C -0.034 4.034 11 C -0.144 4.144 12 C 0.192 3.808 13 O -0.394 6.394 14 C -0.592 4.592 15 H 0.091 0.909 16 C -0.175 4.175 17 N -0.555 5.555 18 Si 0.790 3.210 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.187 1.187 22 C -0.014 4.014 23 C -0.119 4.119 24 H 0.136 0.864 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.220 0.780 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.222 0.778 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.148 -2.935 -3.345 20.634 hybrid contribution 1.901 -1.669 0.018 2.529 sum -18.248 -4.603 -3.327 19.111 Atomic orbital electron populations 1.23353 0.76054 1.05616 1.02390 1.86086 1.23568 1.25031 1.89698 1.17377 0.90691 0.85815 1.02969 1.25820 1.07730 0.97862 1.16465 1.82997 0.89409 1.04023 1.66226 1.24217 0.97354 0.98888 1.18080 1.17044 0.87449 0.81189 0.76780 1.90770 1.48901 1.53417 1.53965 1.48663 1.10160 1.04591 1.70362 1.22367 0.91400 0.86752 1.02854 1.22616 0.94096 0.95302 1.02341 1.19871 0.93260 0.89020 0.78630 1.86097 1.43636 1.87824 1.21825 1.21787 0.91588 1.09745 1.36063 0.90890 1.25837 1.01233 0.96302 0.94174 1.69842 1.20056 1.26419 1.39229 0.85456 0.77974 0.78603 0.79002 1.20079 1.21453 1.18748 1.22929 0.81600 0.97063 0.99798 1.19954 0.94128 0.96329 1.01450 0.86386 0.91482 0.91612 0.77980 0.88391 0.89833 0.88760 0.88553 0.77808 0.92213 0.93287 0.93275 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.93 113.37 1.13 1.37 16 2 O -0.33 -7.52 10.56 -95.86 -1.01 -8.53 16 3 C 0.09 2.20 6.61 21.20 0.14 2.34 16 4 C -0.34 -6.66 9.81 66.87 0.66 -6.01 16 5 S 0.31 6.77 18.42 -56.49 -1.04 5.73 16 6 C -0.26 -8.77 6.38 24.09 0.15 -8.62 16 7 C 0.59 25.08 7.81 86.41 0.68 25.76 16 8 O -0.59 -30.14 17.10 -4.36 -0.07 -30.22 16 9 N -0.61 -25.28 3.33 -816.63 -2.72 -28.00 16 10 C 0.09 2.86 5.17 86.73 0.45 3.31 16 11 C -0.11 -3.79 6.13 31.79 0.19 -3.60 16 12 C 0.23 10.97 0.87 -10.15 -0.01 10.96 16 13 O -0.59 -29.51 13.16 -148.98 -1.96 -31.47 16 14 C -0.55 -28.06 8.27 25.60 0.21 -27.85 16 15 H 0.07 3.54 7.79 -2.91 -0.02 3.51 16 16 C 0.03 1.32 5.29 84.65 0.45 1.77 16 17 N -0.92 -49.86 10.69 21.45 0.23 -49.63 16 18 Si 0.96 41.30 29.54 68.60 2.03 43.32 16 19 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 C 0.11 5.33 5.38 86.85 0.47 5.80 16 23 C -0.08 -2.58 10.00 21.80 0.22 -2.36 16 24 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 0.63 7.84 -2.39 -0.02 0.61 16 26 H 0.07 0.64 7.84 -2.38 -0.02 0.62 16 27 H 0.20 2.42 6.96 -2.91 -0.02 2.40 16 28 H 0.10 2.47 7.01 -2.38 -0.02 2.46 16 29 H 0.08 2.43 6.80 -2.39 -0.02 2.42 16 30 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.10 3.15 8.03 -2.39 -0.02 3.13 16 32 H 0.37 19.88 7.57 -74.06 -0.56 19.32 16 33 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.05 2.78 7.33 -2.39 -0.02 2.76 16 35 H 0.05 2.50 8.03 -2.38 -0.02 2.48 16 36 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -67.61 313.63 0.74 -66.87 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.56 Total: 29.06 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 4.73 Total: 2.87 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -2.49 Total: -77.63 kcal Atomic # 8 Polarization: -67.17 SS G_CDS: -3.05 Total: -70.22 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 6.77 SS G_CDS: -1.04 Total: 5.73 kcal Total: -67.61 0.74 -66.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.543 kcal (2) G-P(sol) polarization free energy of solvation -67.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds