Wall clock time and date at job start Fri Apr 10 2020 20:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46843 * 2 1 4 4 C 1.37106 * 119.99362 * 263.06368 * 3 2 1 5 5 H 1.08000 * 119.99365 * 192.46622 * 4 3 2 6 6 C 1.38948 * 120.00041 * 12.46565 * 4 3 2 7 7 N 1.31406 * 120.00185 * 17.00158 * 6 4 3 8 8 Si 1.86799 * 119.99624 * 197.00161 * 6 4 3 9 9 H 1.48500 * 109.47102 * 90.00331 * 8 6 4 10 10 H 1.48505 * 109.46982 * 210.00027 * 8 6 4 11 11 H 1.48500 * 109.47190 * 330.00259 * 8 6 4 12 12 C 1.34771 * 120.00448 * 83.06176 * 3 2 1 13 13 O 1.21290 * 120.00307 * 184.73766 * 12 3 2 14 14 C 1.50700 * 119.99964 * 4.73950 * 12 3 2 15 15 H 1.09002 * 109.47011 * 319.22146 * 14 12 3 16 16 C 1.53010 * 109.46969 * 79.21788 * 14 12 3 17 17 O 1.42896 * 109.47235 * 199.21787 * 14 12 3 18 18 C 1.35922 * 117.00190 * 156.72616 * 17 14 12 19 19 C 1.38722 * 120.04208 * 1.50248 * 18 17 14 20 20 C 1.38146 * 119.96003 * 179.97438 * 19 18 17 21 21 C 1.38364 * 120.04036 * 0.02562 * 20 19 18 22 22 Cl 1.73598 * 119.95654 * 179.97438 * 21 20 19 23 23 C 1.38371 * 120.08464 * 0.25044 * 21 20 19 24 24 C 1.38146 * 120.04185 * 359.49408 * 23 21 20 25 25 H 1.08999 * 109.47403 * 300.00013 * 1 2 3 26 26 H 1.08995 * 109.47085 * 60.00519 * 1 2 3 27 27 H 1.09007 * 109.46859 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47178 * 239.99609 * 2 1 3 29 29 H 1.09001 * 109.46647 * 119.99468 * 2 1 3 30 30 H 0.97004 * 119.99998 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46966 * 56.47029 * 16 14 12 32 32 H 1.08995 * 109.46722 * 176.47192 * 16 14 12 33 33 H 1.09003 * 109.46756 * 296.46503 * 16 14 12 34 34 H 1.08008 * 120.01940 * 0.02562 * 19 18 17 35 35 H 1.07995 * 119.97803 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.97554 * 179.72673 * 23 21 20 37 37 H 1.08002 * 120.01955 * 180.25604 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3819 1.9797 -1.1788 5 1 2.9258 2.9127 -1.1653 6 6 2.0508 1.3858 -2.3905 7 7 1.1238 0.4555 -2.4347 8 14 2.9236 1.9098 -3.9567 9 1 4.1297 1.0670 -4.1570 10 1 2.0067 1.7448 -5.1132 11 1 3.3281 3.3343 -3.8450 12 6 2.1100 2.0636 1.1585 13 8 2.4318 3.2330 1.1498 14 6 1.8127 1.3737 2.4650 15 1 0.9460 0.7239 2.3437 16 6 3.0224 0.5371 2.8867 17 8 1.5373 2.3527 3.4688 18 6 0.7967 1.9514 4.5355 19 6 0.3711 0.6344 4.6294 20 6 -0.3811 0.2282 5.7146 21 6 -0.7104 1.1341 6.7072 22 17 -1.6562 0.6214 8.0696 23 6 -0.2916 2.4495 6.6126 24 6 0.4652 2.8582 5.5315 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.8924 0.0411 -3.2807 31 1 3.9031 1.1765 2.9471 32 1 2.8317 0.0884 3.8615 33 1 3.1941 -0.2495 2.1519 34 1 0.6283 -0.0731 3.8549 35 1 -0.7130 -0.7969 5.7877 36 1 -0.5533 3.1561 7.3862 37 1 0.7954 3.8840 5.4601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:29:41 Heat of formation + Delta-G solvation = -52.845670 kcal Electronic energy + Delta-G solvation = -21937.620036 eV Core-core repulsion = 18513.447960 eV Total energy + Delta-G solvation = -3424.172075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.092 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.67232 -40.32265 -38.62660 -37.20907 -36.94927 -34.15603 -32.80060 -31.88284 -31.27249 -30.44660 -27.25814 -25.49375 -24.11715 -23.79633 -23.02741 -20.83084 -19.53406 -18.83122 -17.91499 -17.56278 -17.07609 -16.68987 -16.33398 -15.83426 -15.66205 -15.50783 -14.75583 -14.74375 -14.53189 -14.24354 -14.02737 -13.74545 -13.40256 -13.37882 -13.10557 -13.02969 -12.83267 -12.70959 -12.52185 -12.24546 -12.14660 -12.02001 -11.74402 -11.69335 -11.55590 -10.88570 -10.34574 -10.13311 -9.73407 -9.13884 -8.31010 -5.92618 0.17998 0.22093 1.18542 1.35179 1.43384 1.53278 1.76356 2.01314 2.34687 2.59016 3.02036 3.10786 3.61133 3.73583 3.81212 3.89745 3.98582 4.13383 4.32770 4.36125 4.47955 4.60884 4.64636 4.82545 4.84087 4.91322 4.97952 5.07225 5.12872 5.20485 5.26322 5.39732 5.49555 5.55406 5.88891 6.01552 6.32063 6.52976 7.14077 7.41053 7.95871 8.63719 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.033439 B = 0.003423 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.139447 B = 8178.352967 C = 8589.433981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.112 3.888 3 N -0.440 5.440 4 C -0.346 4.346 5 H 0.070 0.930 6 C 0.005 3.995 7 N -0.871 5.871 8 Si 0.987 3.013 9 H -0.265 1.265 10 H -0.272 1.272 11 H -0.282 1.282 12 C 0.429 3.571 13 O -0.630 6.630 14 C 0.084 3.916 15 H 0.106 0.894 16 C -0.165 4.165 17 O -0.312 6.312 18 C 0.117 3.883 19 C -0.204 4.204 20 C -0.063 4.063 21 C -0.084 4.084 22 Cl -0.067 7.067 23 C -0.064 4.064 24 C -0.154 4.154 25 H 0.026 0.974 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.275 0.725 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.057 -7.194 14.915 17.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.011 4.011 3 N -0.159 5.159 4 C -0.474 4.474 5 H 0.088 0.912 6 C -0.197 4.197 7 N -0.510 5.510 8 Si 0.811 3.189 9 H -0.190 1.190 10 H -0.197 1.197 11 H -0.208 1.208 12 C 0.218 3.782 13 O -0.517 6.517 14 C 0.025 3.975 15 H 0.123 0.877 16 C -0.223 4.223 17 O -0.225 6.225 18 C 0.071 3.929 19 C -0.222 4.222 20 C -0.082 4.082 21 C -0.110 4.110 22 Cl -0.038 7.038 23 C -0.083 4.083 24 C -0.173 4.173 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.168 0.832 35 H 0.177 0.823 36 H 0.179 0.821 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.003 -6.645 14.802 16.712 hybrid contribution 0.257 0.423 -0.984 1.102 sum -3.745 -6.222 13.818 15.610 Atomic orbital electron populations 1.22031 0.95716 1.01595 1.00506 1.21775 0.95271 0.81837 1.02177 1.43919 1.54811 1.12568 1.04608 1.19649 1.35347 1.08622 0.83779 0.91180 1.25886 0.95903 0.96823 1.01124 1.70129 1.26455 1.26602 1.27770 0.85031 0.78444 0.78298 0.77111 1.19046 1.19703 1.20757 1.20325 0.85138 0.86878 0.85861 1.90492 1.54979 1.18652 1.87619 1.22202 1.00849 0.89203 0.85253 0.87694 1.22302 0.96294 0.99740 1.03941 1.86208 1.67081 1.39452 1.29740 1.19588 0.91443 0.94139 0.87725 1.21456 1.04131 0.95125 1.01522 1.21073 0.95427 1.00539 0.91154 1.20898 1.02463 0.95104 0.92560 1.98355 1.71141 1.91018 1.43315 1.21039 0.95215 0.94648 0.97369 1.20580 1.02748 1.00276 0.93725 0.95542 0.92198 0.90818 0.88731 0.91238 0.91473 0.92543 0.88517 0.88949 0.83193 0.82318 0.82146 0.84180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 9.47 71.98 0.68 -4.73 16 2 C 0.11 4.57 4.94 86.38 0.43 5.00 16 3 N -0.44 -22.18 2.64 -635.54 -1.68 -23.86 16 4 C -0.35 -19.34 9.43 84.04 0.79 -18.55 16 5 H 0.07 4.29 7.32 -2.91 -0.02 4.27 16 6 C 0.01 0.27 5.06 84.93 0.43 0.70 16 7 N -0.87 -42.26 8.28 21.66 0.18 -42.08 16 8 Si 0.99 40.99 29.59 68.60 2.03 43.02 16 9 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 10 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 C 0.43 21.66 6.83 87.66 0.60 22.26 16 13 O -0.63 -38.10 16.25 15.24 0.25 -37.85 16 14 C 0.08 3.15 1.81 29.85 0.05 3.21 16 15 H 0.11 3.47 3.76 -2.39 -0.01 3.46 16 16 C -0.17 -4.92 8.94 71.99 0.64 -4.28 16 17 O -0.31 -12.17 9.41 -74.38 -0.70 -12.87 16 18 C 0.12 3.56 6.55 22.50 0.15 3.70 16 19 C -0.20 -4.99 8.21 22.36 0.18 -4.81 16 20 C -0.06 -1.30 9.82 22.28 0.22 -1.08 16 21 C -0.08 -1.73 6.32 22.33 0.14 -1.59 16 22 Cl -0.07 -1.21 28.95 -2.72 -0.08 -1.29 16 23 C -0.06 -1.36 9.82 22.28 0.22 -1.14 16 24 C -0.15 -4.08 9.99 22.36 0.22 -3.85 16 25 H 0.03 0.96 6.79 -2.39 -0.02 0.94 16 26 H 0.06 2.75 6.33 -2.39 -0.02 2.73 16 27 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.09 4.21 5.81 -2.39 -0.01 4.19 16 29 H 0.07 2.29 5.09 -2.39 -0.01 2.27 16 30 H 0.27 12.47 8.31 -92.71 -0.77 11.70 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.10 2.24 7.03 -2.39 -0.02 2.22 16 33 H 0.09 2.49 6.41 -2.39 -0.02 2.48 16 34 H 0.15 3.27 5.55 -2.91 -0.02 3.26 16 35 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -67.21 316.48 5.86 -61.35 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 1.11 Total: 18.73 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 4.76 Total: -5.15 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -1.50 Total: -65.94 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -0.45 Total: -50.72 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -67.21 5.86 -61.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.505 kcal (2) G-P(sol) polarization free energy of solvation -67.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds