Wall clock time and date at job start Fri Apr 10 2020 20:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46511 * 119.99953 * 2 1 4 4 C 1.50705 * 109.46707 * 269.99916 * 3 2 1 5 5 H 1.07997 * 119.99908 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99612 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00173 * 179.97438 * 6 4 3 8 8 Si 1.86807 * 119.99967 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47126 * 90.00018 * 8 6 4 10 10 H 1.48502 * 109.47120 * 209.99857 * 8 6 4 11 11 H 1.48493 * 109.47197 * 329.99878 * 8 6 4 12 12 C 1.34773 * 120.00273 * 179.97438 * 2 1 3 13 13 O 1.21287 * 120.00220 * 184.82766 * 12 2 1 14 14 C 1.50694 * 120.00230 * 4.82587 * 12 2 1 15 15 H 1.09005 * 109.46959 * 314.81592 * 14 12 2 16 16 O 1.42898 * 109.47763 * 194.81685 * 14 12 2 17 17 C 1.53005 * 109.47123 * 74.81276 * 14 12 2 18 18 C 1.50695 * 109.47113 * 181.05868 * 17 14 12 19 19 C 1.38246 * 120.00677 * 265.02460 * 18 17 14 20 20 C 1.38217 * 120.00925 * 180.02562 * 19 18 17 21 21 C 1.38265 * 120.03290 * 359.69772 * 20 19 18 22 22 C 1.38192 * 120.00913 * 0.55610 * 21 20 19 23 23 C 1.38327 * 120.00636 * 85.00428 * 18 17 14 24 24 Cl 1.73599 * 120.01307 * 359.97438 * 23 18 17 25 25 H 1.08998 * 109.47241 * 264.86476 * 1 2 3 26 26 H 1.09006 * 109.47287 * 24.87327 * 1 2 3 27 27 H 1.09008 * 109.46772 * 144.86841 * 1 2 3 28 28 H 1.08998 * 109.46940 * 29.99659 * 3 2 1 29 29 H 1.08997 * 109.47313 * 149.99735 * 3 2 1 30 30 H 0.97000 * 120.00051 * 180.02562 * 7 6 4 31 31 H 0.96703 * 113.99715 * 299.99975 * 16 14 12 32 32 H 1.08998 * 109.46537 * 61.06025 * 17 14 12 33 33 H 1.09001 * 109.47091 * 301.06095 * 17 14 12 34 34 H 1.07994 * 119.99056 * 359.97438 * 19 18 17 35 35 H 1.08008 * 119.98204 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.99951 * 180.29742 * 21 20 19 37 37 H 1.07999 * 120.01075 * 179.74528 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.3456 3.2574 -2.9128 8 14 3.7316 3.9300 -0.2530 9 1 5.1049 3.5094 0.1241 10 1 3.7465 5.3566 -0.6651 11 1 2.8249 3.7604 0.9107 12 6 2.1389 -1.1671 0.0005 13 8 3.3485 -1.1690 0.0889 14 6 1.3895 -2.4700 -0.1087 15 1 0.5295 -2.4517 0.5608 16 8 2.2535 -3.5485 0.2552 17 6 0.9106 -2.6637 -1.5489 18 6 0.1390 -3.9540 -1.6524 19 6 0.7777 -5.1110 -2.0580 20 6 0.0699 -6.2943 -2.1534 21 6 -1.2758 -6.3231 -1.8374 22 6 -1.9166 -5.1661 -1.4369 23 6 -1.2086 -3.9810 -1.3411 24 17 -2.0111 -2.5288 -0.8306 25 1 -0.3633 -0.0920 1.0235 26 1 -0.3634 0.9324 -0.4323 27 1 -0.3633 -0.8405 -0.5914 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1386 0.5139 30 1 3.8224 4.0833 -3.0900 31 1 3.0417 -3.6254 -0.2997 32 1 1.7717 -2.7008 -2.2161 33 1 0.2666 -1.8314 -1.8327 34 1 1.8298 -5.0900 -2.3010 35 1 0.5693 -7.1979 -2.4707 36 1 -1.8273 -7.2490 -1.9075 37 1 -2.9687 -5.1877 -1.1940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355630708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:30:27 Heat of formation + Delta-G solvation = -86.987810 kcal Electronic energy + Delta-G solvation = -21928.675752 eV Core-core repulsion = 18503.023163 eV Total energy + Delta-G solvation = -3425.652590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.38657 -40.19037 -37.77060 -37.42241 -36.72004 -34.79843 -33.90935 -31.66626 -31.13371 -29.44736 -27.62537 -25.90144 -23.95268 -23.63017 -22.25258 -20.61935 -19.16779 -18.65718 -18.09656 -17.77853 -16.80904 -16.79101 -16.49678 -16.18935 -15.60226 -15.49704 -15.09462 -14.71344 -14.51083 -14.20279 -14.10809 -14.00294 -13.78791 -13.42287 -13.18824 -12.94896 -12.82630 -12.51628 -12.44164 -12.35217 -12.17429 -12.04694 -11.86830 -11.75861 -11.58436 -10.84738 -10.57185 -9.80852 -9.58787 -9.49538 -8.35787 -6.41265 0.20062 0.34459 1.16298 1.32083 1.35620 1.44043 1.55501 2.16436 2.29479 2.70452 2.98330 3.17779 3.45275 3.70180 3.78226 3.87261 4.00256 4.14005 4.23715 4.40392 4.46271 4.52360 4.60490 4.65910 4.75120 4.80918 4.88563 4.92235 5.03180 5.30855 5.41411 5.45183 5.50460 5.52924 5.91454 6.19304 6.40585 6.59073 6.60238 7.13144 7.26946 8.80665 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.024181 B = 0.004191 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.656235 B = 6679.932872 C = 7038.447485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.597 5.597 3 C 0.219 3.781 4 C -0.537 4.537 5 H 0.033 0.967 6 C 0.015 3.985 7 N -0.942 5.942 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.240 1.240 12 C 0.472 3.528 13 O -0.584 6.584 14 C 0.120 3.880 15 H 0.130 0.870 16 O -0.540 6.540 17 C -0.110 4.110 18 C -0.077 4.077 19 C -0.104 4.104 20 C -0.113 4.113 21 C -0.108 4.108 22 C -0.114 4.114 23 C -0.050 4.050 24 Cl -0.072 7.072 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.021 0.979 30 H 0.269 0.731 31 H 0.389 0.611 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.138 0.862 35 H 0.154 0.846 36 H 0.161 0.839 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.328 -19.202 4.134 23.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.329 5.329 3 C 0.097 3.903 4 C -0.576 4.576 5 H 0.052 0.948 6 C -0.183 4.183 7 N -0.582 5.582 8 Si 0.767 3.233 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.163 1.163 12 C 0.260 3.740 13 O -0.465 6.465 14 C 0.057 3.943 15 H 0.148 0.852 16 O -0.346 6.346 17 C -0.148 4.148 18 C -0.078 4.078 19 C -0.123 4.123 20 C -0.131 4.131 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.076 4.076 24 Cl -0.043 7.043 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.239 0.761 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.156 0.844 35 H 0.172 0.828 36 H 0.179 0.821 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.179 -19.016 4.582 23.586 hybrid contribution 0.970 1.341 -0.370 1.695 sum -12.209 -17.676 4.212 21.892 Atomic orbital electron populations 1.22287 0.78087 1.04570 1.03039 1.47920 1.08124 1.06079 1.70769 1.19435 0.92852 0.82240 0.95766 1.21508 1.37003 1.06933 0.92133 0.94824 1.25790 0.95226 0.98831 0.98495 1.70034 1.42528 1.24481 1.21133 0.85760 0.79598 0.77926 0.79974 1.20144 1.19910 1.16349 1.22089 0.88304 0.87306 0.76270 1.90630 1.16094 1.87823 1.51944 1.21656 0.92524 0.82826 0.97307 0.85234 1.86513 1.38121 1.48422 1.61527 1.21238 1.01111 0.96711 0.95734 1.19442 0.92128 0.95490 1.00692 1.21250 1.00788 0.91657 0.98561 1.21591 0.94775 0.98349 0.98361 1.21511 0.94925 0.98502 0.97692 1.21320 1.01227 0.90693 1.00029 1.21037 0.92766 0.88985 1.04817 1.98358 1.79366 1.37148 1.89421 0.90362 0.90560 0.89739 0.93106 0.96101 0.92195 0.76144 0.90045 0.89149 0.84423 0.82797 0.82146 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.93 9.82 127.77 1.26 3.19 16 2 N -0.60 -24.87 2.86 -851.11 -2.43 -27.30 16 3 C 0.22 10.81 4.24 85.63 0.36 11.17 16 4 C -0.54 -31.45 9.94 25.60 0.25 -31.19 16 5 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 6 C 0.02 0.89 5.47 84.65 0.46 1.35 16 7 N -0.94 -59.08 13.96 21.45 0.30 -58.78 16 8 Si 0.94 44.42 27.47 68.60 1.88 46.31 16 9 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 12 C 0.47 19.60 6.96 87.66 0.61 20.21 16 13 O -0.58 -29.25 15.86 15.55 0.25 -29.00 16 14 C 0.12 3.69 2.58 29.85 0.08 3.77 16 15 H 0.13 3.63 7.15 -2.38 -0.02 3.61 16 16 O -0.54 -16.15 12.60 -130.37 -1.64 -17.79 16 17 C -0.11 -3.06 4.30 29.85 0.13 -2.94 16 18 C -0.08 -1.77 4.85 -19.84 -0.10 -1.87 16 19 C -0.10 -2.01 9.53 22.27 0.21 -1.80 16 20 C -0.11 -1.64 10.05 22.27 0.22 -1.42 16 21 C -0.11 -1.43 10.05 22.27 0.22 -1.21 16 22 C -0.11 -1.87 9.83 22.29 0.22 -1.65 16 23 C -0.05 -1.05 6.31 22.33 0.14 -0.91 16 24 Cl -0.07 -1.54 25.02 -2.72 -0.07 -1.61 16 25 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.08 2.44 8.03 -2.38 -0.02 2.42 16 27 H 0.08 2.35 2.27 -2.38 -0.01 2.35 16 28 H 0.05 2.30 7.13 -2.39 -0.02 2.29 16 29 H 0.02 1.11 6.79 -2.39 -0.02 1.09 16 30 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.39 10.39 8.69 -74.06 -0.64 9.74 16 32 H 0.08 2.36 8.05 -2.39 -0.02 2.34 16 33 H 0.09 2.67 5.27 -2.39 -0.01 2.66 16 34 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -75.71 322.57 2.77 -72.94 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.41 Total: 18.54 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 4.08 Total: -3.30 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -2.13 Total: -86.08 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -1.40 Total: -46.79 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.31 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.07 Total: -1.61 kcal Total: -75.71 2.77 -72.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355630708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.052 kcal (2) G-P(sol) polarization free energy of solvation -75.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds