Wall clock time and date at job start Fri Apr 10 2020 20:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35957 * 116.99749 * 2 1 4 4 C 1.37570 * 120.82580 * 180.29558 * 3 2 1 5 5 C 1.38034 * 114.25491 * 180.21306 * 4 3 2 6 6 C 1.47114 * 127.76746 * 179.79845 * 5 4 3 7 7 O 1.21640 * 119.99578 * 359.70966 * 6 5 4 8 8 N 1.34772 * 120.00560 * 179.70236 * 6 5 4 9 9 C 1.46500 * 120.00149 * 180.02562 * 8 6 5 10 10 H 1.08998 * 112.85068 * 23.81182 * 9 8 6 11 11 C 1.53777 * 113.61088 * 155.00452 * 9 8 6 12 12 C 1.53781 * 87.08336 * 89.11940 * 11 9 8 13 13 H 1.09002 * 113.61228 * 270.88201 * 12 11 9 14 14 N 1.46500 * 113.61711 * 140.06028 * 12 11 9 15 15 C 1.36940 * 119.99935 * 156.52601 * 14 12 11 16 16 H 1.08002 * 119.99799 * 0.02562 * 15 14 12 17 17 C 1.38810 * 119.99860 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99529 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00218 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47321 * 89.99965 * 19 17 15 21 21 H 1.48501 * 109.47334 * 210.00202 * 19 17 15 22 22 H 1.48504 * 109.46914 * 329.99630 * 19 17 15 23 23 C 1.53775 * 113.61823 * 252.50051 * 9 8 6 24 24 S 1.77242 * 104.47633 * 359.54266 * 5 4 3 25 25 N 1.30363 * 120.83191 * 359.97033 * 3 2 1 26 26 H 1.09001 * 109.47100 * 299.99894 * 1 2 3 27 27 H 1.08994 * 109.46650 * 60.00138 * 1 2 3 28 28 H 1.09000 * 109.46615 * 180.02562 * 1 2 3 29 29 H 1.08004 * 122.87459 * 0.03296 * 4 3 2 30 30 H 0.96999 * 120.00148 * 0.02562 * 8 6 5 31 31 H 1.08997 * 113.61941 * 334.56647 * 11 9 8 32 32 H 1.09009 * 113.68972 * 203.67727 * 11 9 8 33 33 H 0.96998 * 119.99853 * 336.53388 * 14 12 11 34 34 H 0.97009 * 119.99277 * 180.02562 * 18 17 15 35 35 H 1.08993 * 113.61636 * 156.33149 * 23 9 8 36 36 H 1.09008 * 113.61006 * 25.43391 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4189 1.3033 -0.0061 5 6 3.9006 2.5968 -0.0006 6 6 5.3049 3.0353 -0.0007 7 8 6.1994 2.2109 -0.0007 8 7 5.6004 4.3502 -0.0008 9 6 6.9989 4.7867 -0.0015 10 1 7.6766 4.0356 -0.4073 11 6 7.2060 6.1893 -0.5970 12 6 6.9795 6.7391 0.8212 13 1 5.9338 6.9481 1.0466 14 7 7.8694 7.8496 1.1692 15 6 7.5049 8.7394 2.1442 16 1 6.5616 8.6222 2.6569 17 6 8.3479 9.7919 2.4736 18 7 7.9977 10.6468 3.4110 19 14 9.9791 9.9950 1.5863 20 1 9.7875 10.8501 0.3874 21 1 10.9623 10.6336 2.4978 22 1 10.4845 8.6626 1.1684 23 6 7.4613 5.3748 1.3421 24 16 2.4471 3.6110 -0.0011 25 7 1.3522 2.3149 -0.0006 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 4.0644 0.4374 -0.0116 30 1 4.8872 5.0076 -0.0005 31 1 6.4322 6.4809 -1.3071 32 1 8.2139 6.3599 -0.9756 33 1 8.7168 7.9546 0.7089 34 1 8.5867 11.3826 3.6409 35 1 8.5393 5.3213 1.4942 36 1 6.8934 5.0087 2.1975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020168898.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:31:48 Heat of formation + Delta-G solvation = 17.435152 kcal Electronic energy + Delta-G solvation = -20635.191734 eV Core-core repulsion = 17248.403721 eV Total energy + Delta-G solvation = -3386.788013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.62772 -40.09528 -38.25834 -36.73454 -34.30705 -32.85767 -31.57811 -30.47721 -28.43728 -25.80816 -25.33401 -24.32953 -22.41496 -21.74989 -20.29838 -19.34109 -18.99843 -18.07037 -17.54414 -16.62360 -16.54472 -16.13050 -15.27810 -15.10709 -14.93345 -14.65006 -14.25322 -13.74338 -13.72831 -13.35687 -12.69920 -12.46696 -12.36453 -12.26899 -12.08863 -11.79352 -11.50916 -11.21817 -11.04957 -10.95145 -10.54509 -10.35332 -10.21434 -10.09469 -9.98917 -9.62649 -9.11796 -8.94605 -8.76276 -7.33770 -5.83297 -3.19724 -0.21953 0.79475 1.16503 1.86292 2.48586 2.79012 3.02817 3.33592 3.36028 3.42021 4.21488 4.53411 4.57294 4.74562 4.79105 4.84600 4.87828 4.98035 5.14682 5.17410 5.32495 5.35147 5.60525 5.68642 5.70016 5.80751 6.02206 6.09784 6.24939 6.41544 6.47957 6.61243 6.84370 7.22146 7.85549 7.91943 8.35994 9.13262 9.85724 10.04784 11.34697 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.033973 B = 0.002806 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.989455 B = 9977.020582 C =10495.674576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.294 6.294 3 C 0.305 3.695 4 C -0.129 4.129 5 C -0.179 4.179 6 C 0.595 3.405 7 O -0.516 6.516 8 N -0.694 5.694 9 C 0.116 3.884 10 H 0.103 0.897 11 C -0.162 4.162 12 C 0.171 3.829 13 H 0.082 0.918 14 N -0.736 5.736 15 C -0.251 4.251 16 H 0.091 0.909 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.276 1.276 23 C -0.176 4.176 24 S 0.295 5.705 25 N -0.510 5.510 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.179 0.821 30 H 0.402 0.598 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.363 0.637 34 H 0.260 0.740 35 H 0.089 0.911 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.819 -19.353 -9.962 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.200 6.200 3 C 0.091 3.909 4 C -0.167 4.167 5 C -0.311 4.311 6 C 0.378 3.622 7 O -0.392 6.392 8 N -0.345 5.345 9 C 0.011 3.989 10 H 0.121 0.879 11 C -0.201 4.201 12 C 0.059 3.941 13 H 0.100 0.900 14 N -0.375 5.375 15 C -0.381 4.381 16 H 0.109 0.891 17 C -0.190 4.190 18 N -0.578 5.578 19 Si 0.715 3.285 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.202 1.202 23 C -0.218 4.218 24 S 0.444 5.556 25 N -0.352 5.352 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.196 0.804 30 H 0.237 0.763 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.197 0.803 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.639 -18.419 -9.761 24.911 hybrid contribution 1.509 -0.830 -0.451 1.780 sum -12.130 -19.249 -10.212 24.938 Atomic orbital electron populations 1.23007 0.76537 1.03738 1.02679 1.86318 1.23130 1.22423 1.88166 1.19910 0.89795 0.85329 0.95820 1.20763 0.92345 0.98615 1.04941 1.26039 0.99427 0.97825 1.07849 1.16614 0.85204 0.83100 0.77263 1.90855 1.46637 1.52524 1.49164 1.45549 1.09400 1.05866 1.73647 1.21907 0.80950 0.96463 0.99583 0.87903 1.23887 1.02825 0.93914 0.99519 1.21630 0.95042 0.86285 0.91117 0.89967 1.42734 1.20080 1.30030 1.44685 1.19116 1.04369 1.03317 1.11265 0.89118 1.24707 0.98358 0.97430 0.98543 1.69707 1.37832 1.17084 1.33216 0.86547 0.84904 0.77651 0.79386 1.21011 1.21686 1.20243 1.24308 1.02061 0.99669 0.95769 1.85103 0.89817 1.11792 1.68839 1.76447 1.26737 1.01095 1.30898 0.91990 0.92038 0.87894 0.80412 0.76308 0.91145 0.88855 0.80337 0.92969 0.89289 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.43 101.05 1.05 1.28 16 2 O -0.29 -2.79 10.51 -19.61 -0.21 -3.00 16 3 C 0.30 3.20 7.36 -18.42 -0.14 3.06 16 4 C -0.13 -1.34 10.09 -39.90 -0.40 -1.74 16 5 C -0.18 -1.94 6.74 -36.06 -0.24 -2.19 16 6 C 0.59 7.56 7.80 -12.66 -0.10 7.47 16 7 O -0.52 -8.13 16.55 5.24 0.09 -8.04 16 8 N -0.69 -8.14 5.26 -54.19 -0.28 -8.43 16 9 C 0.12 1.53 4.32 -67.12 -0.29 1.24 16 10 H 0.10 1.39 7.46 -51.93 -0.39 1.00 16 11 C -0.16 -2.19 7.57 -25.92 -0.20 -2.38 16 12 C 0.17 2.96 4.35 -67.12 -0.29 2.66 16 13 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 14 N -0.74 -16.41 5.21 -52.64 -0.27 -16.69 16 15 C -0.25 -6.82 10.45 -15.06 -0.16 -6.97 16 16 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 17 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 18 N -0.93 -28.67 13.97 55.49 0.78 -27.90 16 19 Si 0.88 21.49 27.74 -169.99 -4.71 16.77 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 23 C -0.18 -2.77 7.68 -25.92 -0.20 -2.97 16 24 S 0.30 2.84 23.27 -107.50 -2.50 0.34 16 25 N -0.51 -5.54 11.03 29.19 0.32 -5.21 16 26 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 27 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.18 1.67 8.06 -52.48 -0.42 1.24 16 30 H 0.40 3.98 8.06 -40.82 -0.33 3.65 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.24 8.11 -51.92 -0.42 0.82 16 33 H 0.36 7.96 5.77 -40.82 -0.24 7.72 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 LS Contribution 327.34 15.07 4.93 4.93 Total: -1.00 -32.63 327.34 -7.27 -39.90 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -4.34 Total: 7.79 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.06 Total: -0.47 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.54 Total: -58.23 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.12 Total: -11.04 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.77 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -2.50 Total: 0.34 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.63 -7.27 -39.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020168898.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.332 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds