Wall clock time and date at job start Fri Apr 10 2020 20:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36005 * 117.00014 * 2 1 4 4 C 1.38670 * 120.00337 * 359.97438 * 3 2 1 5 5 C 1.38143 * 120.01322 * 179.97438 * 4 3 2 6 6 C 1.38711 * 120.01693 * 0.04893 * 5 4 3 7 7 O 1.35989 * 119.99220 * 179.97438 * 6 5 4 8 8 C 1.42898 * 117.00219 * 354.04368 * 7 6 5 9 9 C 1.53516 * 114.16842 * 201.73010 * 8 7 6 10 10 N 1.47489 * 87.92879 * 220.32649 * 9 8 7 11 11 C 1.46896 * 110.99625 * 138.70143 * 10 9 8 12 12 C 1.50704 * 109.46751 * 169.99902 * 11 10 9 13 13 H 1.08005 * 119.99990 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00003 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99916 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00045 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47142 * 180.02562 * 16 14 12 18 18 H 1.48498 * 109.47317 * 300.00095 * 16 14 12 19 19 H 1.48500 * 109.47196 * 60.00152 * 16 14 12 20 20 C 1.47489 * 87.83366 * 27.00949 * 10 9 8 21 21 C 1.38677 * 120.01288 * 0.24859 * 6 5 4 22 22 C 1.38248 * 119.98229 * 359.43038 * 21 6 5 23 23 Cl 1.73599 * 120.00907 * 180.27170 * 22 21 6 24 24 H 1.09000 * 109.47241 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47229 * 300.00220 * 1 2 3 26 26 H 1.08994 * 109.47337 * 60.00330 * 1 2 3 27 27 H 1.08003 * 119.99445 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.99282 * 180.02562 * 5 4 3 29 29 H 1.09002 * 113.25206 * 334.67897 * 8 7 6 30 30 H 1.08998 * 113.47667 * 105.56438 * 9 8 7 31 31 H 1.08999 * 113.47539 * 335.08869 * 9 8 7 32 32 H 1.08995 * 109.47325 * 50.00461 * 11 10 9 33 33 H 1.08998 * 109.47422 * 289.99513 * 11 10 9 34 34 H 0.97001 * 119.99814 * 180.02562 * 15 14 12 35 35 H 1.08999 * 113.47569 * 87.75901 * 20 10 9 36 36 H 1.08994 * 113.47094 * 218.22090 * 20 10 9 37 37 H 1.07998 * 120.00788 * 179.70400 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2913 2.3748 -0.0005 5 6 1.9182 3.6058 0.0000 6 6 3.3034 3.6791 0.0000 7 8 3.9201 4.8911 0.0000 8 6 3.0856 6.0436 -0.1321 9 6 3.8159 7.2929 -0.6447 10 7 3.0343 8.0823 0.3255 11 6 3.8727 9.0998 0.9732 12 6 3.0005 10.0389 1.7660 13 1 1.9304 9.8940 1.7869 14 6 3.5687 11.0824 2.4654 15 7 4.8717 11.2585 2.4403 16 14 2.4877 12.2460 3.4486 17 1 3.3352 13.2748 4.1033 18 1 1.5189 12.9091 2.5393 19 1 1.7495 11.4797 4.4845 20 6 2.9421 6.8667 1.1556 21 6 4.0595 2.5165 -0.0057 22 6 3.4324 1.2845 0.0005 23 17 4.3782 -0.1712 0.0005 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 0.2127 2.3183 -0.0014 28 1 1.3297 4.5114 0.0000 29 1 2.1439 5.8369 -0.6406 30 1 3.5887 7.5331 -1.6833 31 1 4.8859 7.2861 -0.4372 32 1 4.4144 9.6620 0.2127 33 1 4.5837 8.6134 1.6410 34 1 5.2715 11.9924 2.9327 35 1 3.7790 6.7462 1.8435 36 1 1.9746 6.7459 1.6427 37 1 5.1380 2.5737 -0.0104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234220708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:30:20 Heat of formation + Delta-G solvation = -8.997916 kcal Electronic energy + Delta-G solvation = -20837.241091 eV Core-core repulsion = 17414.970397 eV Total energy + Delta-G solvation = -3422.270694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77197 -39.81204 -38.23506 -36.86061 -35.86162 -32.92158 -31.25046 -29.93159 -29.02642 -27.35786 -25.68047 -25.31370 -23.30383 -22.46181 -21.31251 -19.58831 -18.82068 -17.89116 -16.91617 -16.33239 -16.08801 -15.57325 -15.30612 -15.06697 -14.56638 -14.44656 -14.22200 -14.11318 -13.60871 -12.96754 -12.89310 -12.71013 -12.22681 -12.13591 -12.00705 -11.74846 -11.61983 -11.16792 -11.13738 -10.97993 -10.86311 -10.64528 -10.31071 -9.94967 -9.84269 -9.31419 -9.12177 -8.49121 -8.07297 -7.90144 -6.08299 -4.10310 0.84473 1.16619 1.90835 2.93129 3.27247 3.30816 3.34766 3.37700 3.39188 4.38329 4.42103 4.58609 4.63390 4.76803 4.79221 4.85110 4.87298 5.05273 5.16994 5.18117 5.26956 5.39400 5.47017 5.72565 5.89954 5.92165 5.96085 6.07236 6.16313 6.21980 6.26068 6.43894 6.97484 7.09112 7.42624 7.55334 7.75694 8.01214 8.35724 8.96267 9.53961 11.02759 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.028580 B = 0.002708 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.473377 B =10337.649779 C =10824.378033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.093 3.907 4 C -0.155 4.155 5 C -0.164 4.164 6 C 0.119 3.881 7 O -0.298 6.298 8 C 0.041 3.959 9 C 0.004 3.996 10 N -0.460 5.460 11 C 0.161 3.839 12 C -0.508 4.508 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.901 3.099 17 H -0.287 1.287 18 H -0.276 1.276 19 H -0.277 1.277 20 C -0.004 4.004 21 C -0.113 4.113 22 C -0.029 4.029 23 Cl -0.054 7.054 24 H 0.100 0.900 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.139 0.861 28 H 0.143 0.857 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.007 0.993 34 H 0.263 0.737 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.442 -22.273 -6.250 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.047 3.953 4 C -0.173 4.173 5 C -0.183 4.183 6 C 0.073 3.927 7 O -0.210 6.210 8 C -0.015 4.015 9 C -0.125 4.125 10 N -0.185 5.185 11 C 0.035 3.965 12 C -0.547 4.547 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.538 5.538 16 Si 0.729 3.271 17 H -0.213 1.213 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.134 4.134 21 C -0.132 4.132 22 C -0.057 4.057 23 Cl -0.025 7.025 24 H 0.119 0.881 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.157 0.843 28 H 0.160 0.840 29 H 0.125 0.875 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.025 0.975 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.507 -22.019 -6.355 23.823 hybrid contribution -0.062 0.520 0.907 1.048 sum -6.569 -21.498 -5.448 23.130 Atomic orbital electron populations 1.23075 0.78317 1.04049 1.01413 1.86148 1.21257 1.25703 1.89080 1.18491 0.90339 0.85209 1.01280 1.20984 1.00171 0.90968 1.05225 1.21288 0.93710 0.98799 1.04462 1.18711 0.90690 0.85955 0.97323 1.86219 1.36225 1.11693 1.86902 1.24572 0.94959 0.82044 0.99918 1.24039 0.98478 0.90077 0.99913 1.69039 1.37084 1.04087 1.08298 1.20286 0.92008 0.90189 0.93983 1.21031 0.94010 1.11094 1.28559 0.91854 1.25006 0.95091 0.97762 0.96800 1.69943 1.09759 1.31481 1.42639 0.86511 0.80171 0.80348 0.80098 1.21286 1.20115 1.20218 1.24297 1.02815 0.90946 0.95293 1.20087 1.00941 0.87665 1.04504 1.19749 0.88517 0.88259 1.09158 1.98364 1.71748 1.35394 1.96974 0.88144 0.92549 0.92597 0.84329 0.83978 0.87465 0.89614 0.90771 0.95011 0.97528 0.92745 0.90585 0.90079 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.19 9.95 -19.76 -0.20 -3.39 16 3 C 0.09 1.05 6.68 -39.22 -0.26 0.78 16 4 C -0.15 -1.57 9.03 -39.46 -0.36 -1.92 16 5 C -0.16 -1.87 9.02 -39.44 -0.36 -2.23 16 6 C 0.12 1.57 6.68 -39.24 -0.26 1.30 16 7 O -0.30 -4.44 10.19 -19.71 -0.20 -4.64 16 8 C 0.04 0.62 4.01 -26.20 -0.11 0.52 16 9 C 0.00 0.07 7.52 -7.53 -0.06 0.01 16 10 N -0.46 -9.68 6.32 -246.08 -1.55 -11.24 16 11 C 0.16 4.15 4.57 -4.98 -0.02 4.12 16 12 C -0.51 -14.31 9.39 -34.44 -0.32 -14.63 16 13 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 14 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 16 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.00 -0.08 7.55 -7.53 -0.06 -0.13 16 21 C -0.11 -1.38 9.76 -39.42 -0.38 -1.77 16 22 C -0.03 -0.35 6.33 -39.38 -0.25 -0.60 16 23 Cl -0.05 -0.61 28.50 -51.86 -1.48 -2.08 16 24 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.30 7.66 -51.93 -0.40 -0.09 16 26 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 27 H 0.14 1.03 6.29 -52.48 -0.33 0.70 16 28 H 0.14 1.48 5.92 -52.48 -0.31 1.17 16 29 H 0.11 1.38 5.99 -51.93 -0.31 1.07 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.32 7.91 -51.93 -0.41 0.90 16 32 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.01 0.19 7.30 -51.93 -0.38 -0.19 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.08 1.47 7.42 -51.93 -0.39 1.09 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 327.75 15.07 4.94 4.94 Total: -1.00 -30.88 327.75 -8.89 -39.78 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -4.58 Total: -2.11 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -1.54 Total: -11.93 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.82 Total: -37.09 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.40 Total: -8.03 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.48 Total: -2.08 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.88 -8.89 -39.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234220708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.778 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds