Wall clock time and date at job start Fri Apr 10 2020 20:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00266 * 2 1 4 4 H 1.48495 * 109.47358 * 180.27508 * 3 2 1 5 5 H 1.48502 * 109.46909 * 300.27352 * 3 2 1 6 6 H 1.48497 * 109.47244 * 60.27167 * 3 2 1 7 7 C 1.38803 * 119.99716 * 180.27174 * 2 1 3 8 8 H 1.07997 * 119.99969 * 179.72877 * 7 2 1 9 9 S 1.76199 * 120.00057 * 359.72610 * 7 2 1 10 10 C 1.81008 * 100.00015 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47103 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46840 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46777 * 179.97438 * 12 11 10 14 14 C 1.47849 * 111.00217 * 285.14338 * 13 12 11 15 15 C 1.54901 * 104.79706 * 213.63621 * 14 13 12 16 16 C 1.55142 * 101.65535 * 37.07373 * 15 14 13 17 17 C 1.47445 * 110.99921 * 164.30266 * 13 12 11 18 18 H 1.09005 * 109.89170 * 242.66211 * 17 13 12 19 19 C 1.50697 * 109.89076 * 3.69038 * 17 13 12 20 20 C 1.38423 * 122.53831 * 62.98111 * 19 17 13 21 21 C 1.33391 * 114.92241 * 179.97438 * 20 19 17 22 22 S 1.75885 * 109.59275 * 359.97438 * 21 20 19 23 23 C 1.33388 * 122.53919 * 242.69748 * 19 17 13 24 24 H 0.97001 * 119.99806 * 359.72961 * 1 2 3 25 25 H 1.09002 * 109.46808 * 300.00258 * 10 9 7 26 26 H 1.08998 * 109.47179 * 60.00030 * 10 9 7 27 27 H 1.09004 * 109.46914 * 300.00088 * 11 10 9 28 28 H 1.08998 * 109.47282 * 59.99843 * 11 10 9 29 29 H 1.08998 * 109.47281 * 299.99274 * 12 11 10 30 30 H 1.08998 * 109.47376 * 59.99820 * 12 11 10 31 31 H 1.08994 * 110.37234 * 332.46922 * 14 13 12 32 32 H 1.09007 * 110.36929 * 94.80827 * 14 13 12 33 33 H 1.08997 * 110.99480 * 278.98043 * 15 14 13 34 34 H 1.09002 * 111.02498 * 155.17671 * 15 14 13 35 35 H 1.08999 * 110.70795 * 205.96386 * 16 15 14 36 36 H 1.08997 * 110.71039 * 82.72496 * 16 15 14 37 37 H 1.07998 * 122.54439 * 359.97438 * 20 19 17 38 38 H 1.07994 * 125.20503 * 179.97438 * 21 20 19 39 39 H 1.07991 * 125.20576 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 -0.0067 5 1 1.8866 2.3992 -1.2092 6 1 1.8967 2.3935 1.2158 7 6 2.0103 -1.2021 -0.0057 8 1 3.0902 -1.2021 -0.0101 9 16 1.1292 -2.7280 -0.0056 10 6 2.5158 -3.8915 -0.0133 11 6 1.9792 -5.3243 -0.0150 12 6 3.1512 -6.3078 -0.0209 13 7 2.6360 -7.6835 -0.0218 14 6 2.1169 -8.0559 1.3115 15 6 2.4283 -9.5670 1.4493 16 6 3.8081 -9.6680 0.7474 17 6 3.6905 -8.6423 -0.3997 18 1 3.4160 -9.1500 -1.3244 19 6 5.0000 -7.9190 -0.5814 20 6 5.6331 -7.2538 0.4543 21 6 6.7844 -6.6664 0.1245 22 16 7.1226 -6.9462 -1.5787 23 6 5.6395 -7.8760 -1.7512 24 1 -0.4850 0.8401 0.0040 25 1 3.1211 -3.7295 -0.9053 26 1 3.1277 -3.7334 0.8747 27 1 1.3736 -5.4865 0.8767 28 1 1.3675 -5.4822 -0.9032 29 1 3.7571 -6.1457 -0.9124 30 1 3.7626 -6.1498 0.8676 31 1 2.6293 -7.4903 2.0897 32 1 1.0417 -7.8838 1.3617 33 1 1.6816 -10.1684 0.9309 34 1 2.5013 -9.8572 2.4975 35 1 3.9671 -10.6714 0.3523 36 1 4.6099 -9.3906 1.4316 37 1 5.2259 -7.2135 1.4538 38 1 7.4127 -6.1048 0.7999 39 1 5.2982 -8.3397 -2.6648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074981663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:31:26 Heat of formation + Delta-G solvation = 30.367829 kcal Electronic energy + Delta-G solvation = -19340.220785 eV Core-core repulsion = 16500.286790 eV Total energy + Delta-G solvation = -2839.933995 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 297.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41447 -36.89863 -34.19338 -32.39391 -30.82036 -30.36575 -28.19694 -25.76940 -24.96901 -23.85124 -21.80805 -21.39492 -20.17283 -18.76441 -17.58645 -17.34484 -16.32977 -15.60874 -15.21125 -14.77613 -14.72488 -14.17834 -13.94463 -13.37260 -13.28850 -13.02320 -12.73850 -12.65468 -12.46847 -12.25153 -11.83260 -11.47996 -11.33648 -11.19408 -11.14346 -11.04635 -10.91649 -10.71986 -10.70007 -10.55395 -10.20224 -9.47113 -9.03176 -9.01568 -8.49647 -8.24126 -8.20233 -6.47647 -6.19282 -3.88647 0.89351 1.54637 1.86584 2.49900 3.22867 3.24702 3.32002 3.60338 4.08666 4.26653 4.44172 4.58299 4.69827 4.80983 4.97212 5.16672 5.20586 5.29281 5.35025 5.39198 5.39862 5.44128 5.59519 5.64225 5.72961 5.76208 5.87477 5.89211 5.94224 6.00018 6.05750 6.18580 6.24291 6.34712 6.42844 6.67687 6.83479 7.02206 7.14660 7.64409 8.40659 9.27135 10.89018 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.003723 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.684746 B = 7518.031864 C = 8821.437588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.515 4.515 8 H 0.072 0.928 9 S -0.133 6.133 10 C -0.110 4.110 11 C -0.092 4.092 12 C 0.055 3.945 13 N -0.516 5.516 14 C 0.039 3.961 15 C -0.129 4.129 16 C -0.134 4.134 17 C 0.130 3.870 18 H 0.091 0.909 19 C -0.108 4.108 20 C -0.125 4.125 21 C -0.210 4.210 22 S 0.089 5.911 23 C -0.205 4.205 24 H 0.266 0.734 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.137 0.863 38 H 0.163 0.837 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.595 -20.460 0.694 23.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.743 3.257 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.663 4.663 8 H 0.090 0.910 9 S 0.095 5.905 10 C -0.259 4.259 11 C -0.130 4.130 12 C -0.074 4.074 13 N -0.240 5.240 14 C -0.089 4.089 15 C -0.168 4.168 16 C -0.172 4.172 17 C 0.020 3.980 18 H 0.109 0.891 19 C -0.122 4.122 20 C -0.155 4.155 21 C -0.345 4.345 22 S 0.352 5.648 23 C -0.341 4.341 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.154 0.846 38 H 0.181 0.819 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 11.098 -20.106 -0.663 22.975 hybrid contribution 1.453 1.124 1.513 2.380 sum 12.551 -18.983 0.850 22.773 Atomic orbital electron populations 1.70038 1.05901 1.27129 1.47501 1.25006 0.95058 0.99024 0.94692 0.86134 0.79671 0.81978 0.77874 1.19640 1.20561 1.20591 1.22740 0.94534 0.90870 1.58142 0.91009 1.84621 1.09701 0.99350 1.96812 1.23211 1.02657 0.97517 1.02506 1.21245 0.97045 0.91831 1.02925 1.22580 0.96751 0.87072 1.01030 1.63842 1.31105 1.02363 1.26667 1.23147 1.01310 0.94688 0.89713 1.22719 0.96783 0.96632 1.00626 1.22872 0.97864 0.99273 0.97224 1.21230 0.85672 0.91905 0.99214 0.89082 1.19216 0.98361 1.01654 0.92925 1.20044 0.95099 0.99944 1.00422 1.25564 1.02217 1.08068 0.98671 1.84294 1.23003 1.50927 1.06533 1.25468 0.99452 1.07206 1.01956 0.92413 0.92344 0.92566 0.91932 0.91008 0.90732 0.94103 0.93493 0.89802 0.90581 0.90893 0.90763 0.91124 0.84585 0.81921 0.81838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -15.09 9.50 30.94 0.29 -14.80 16 8 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.13 -3.58 21.44 -107.50 -2.30 -5.89 16 10 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 11 C -0.09 -1.60 5.33 -26.73 -0.14 -1.74 16 12 C 0.05 0.79 3.42 -3.82 -0.01 0.78 16 13 N -0.52 -6.49 5.12 -224.72 -1.15 -7.64 16 14 C 0.04 0.43 6.07 -2.30 -0.01 0.42 16 15 C -0.13 -1.11 7.08 -24.59 -0.17 -1.29 16 16 C -0.13 -1.16 6.40 -24.90 -0.16 -1.32 16 17 C 0.13 1.37 3.70 -67.87 -0.25 1.12 16 18 H 0.09 0.93 8.03 -51.93 -0.42 0.52 16 19 C -0.11 -1.17 2.85 -106.25 -0.30 -1.48 16 20 C -0.12 -1.36 6.61 -41.21 -0.27 -1.64 16 21 C -0.21 -2.20 11.23 29.04 0.33 -1.88 16 22 S 0.09 0.91 23.34 -107.50 -2.51 -1.60 16 23 C -0.20 -2.13 10.84 29.04 0.31 -1.81 16 24 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 26 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 27 H 0.06 1.09 7.70 -51.93 -0.40 0.69 16 28 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.07 1.14 6.48 -51.93 -0.34 0.81 16 30 H 0.04 0.58 5.35 -51.93 -0.28 0.30 16 31 H 0.05 0.53 7.53 -51.93 -0.39 0.14 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.62 6.97 -51.93 -0.36 0.26 16 37 H 0.14 1.44 7.07 -52.49 -0.37 1.07 16 38 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -31.45 336.53 -11.37 -42.81 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.90 Total: -0.16 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -0.28 Total: -23.78 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: -0.42 Total: -33.30 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -4.81 Total: -7.49 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.45 -11.37 -42.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.182 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds