Wall clock time and date at job start Fri Apr 10 2020 20:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00266 * 2 1 4 4 H 1.48495 * 109.47358 * 180.27508 * 3 2 1 5 5 H 1.48502 * 109.46909 * 300.27352 * 3 2 1 6 6 H 1.48497 * 109.47244 * 60.27167 * 3 2 1 7 7 C 1.38803 * 119.99716 * 180.27174 * 2 1 3 8 8 H 1.07997 * 119.99969 * 179.72877 * 7 2 1 9 9 S 1.76199 * 120.00057 * 359.72610 * 7 2 1 10 10 C 1.81008 * 100.00015 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47103 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46840 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46777 * 179.97438 * 12 11 10 14 14 C 1.47849 * 111.00217 * 285.14338 * 13 12 11 15 15 C 1.54901 * 104.79706 * 213.63621 * 14 13 12 16 16 C 1.55142 * 101.65535 * 37.07373 * 15 14 13 17 17 C 1.47445 * 110.99921 * 164.30266 * 13 12 11 18 18 H 1.09005 * 109.89170 * 242.66211 * 17 13 12 19 19 C 1.50697 * 109.89076 * 3.69038 * 17 13 12 20 20 C 1.38423 * 122.53831 * 62.98111 * 19 17 13 21 21 C 1.33391 * 114.92241 * 179.97438 * 20 19 17 22 22 S 1.75885 * 109.59275 * 359.97438 * 21 20 19 23 23 C 1.33388 * 122.53919 * 242.69748 * 19 17 13 24 24 H 0.97001 * 119.99806 * 359.72961 * 1 2 3 25 25 H 1.09002 * 109.46808 * 300.00258 * 10 9 7 26 26 H 1.08998 * 109.47179 * 60.00030 * 10 9 7 27 27 H 1.09004 * 109.46914 * 300.00088 * 11 10 9 28 28 H 1.08998 * 109.47282 * 59.99843 * 11 10 9 29 29 H 1.08998 * 109.47281 * 299.99274 * 12 11 10 30 30 H 1.08998 * 109.47376 * 59.99820 * 12 11 10 31 31 H 1.08994 * 110.37234 * 332.46922 * 14 13 12 32 32 H 1.09007 * 110.36929 * 94.80827 * 14 13 12 33 33 H 1.08997 * 110.99480 * 278.98043 * 15 14 13 34 34 H 1.09002 * 111.02498 * 155.17671 * 15 14 13 35 35 H 1.08999 * 110.70795 * 205.96386 * 16 15 14 36 36 H 1.08997 * 110.71039 * 82.72496 * 16 15 14 37 37 H 1.07998 * 122.54439 * 359.97438 * 20 19 17 38 38 H 1.07994 * 125.20503 * 179.97438 * 21 20 19 39 39 H 1.07991 * 125.20576 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 -0.0067 5 1 1.8866 2.3992 -1.2092 6 1 1.8967 2.3935 1.2158 7 6 2.0103 -1.2021 -0.0057 8 1 3.0902 -1.2021 -0.0101 9 16 1.1292 -2.7280 -0.0056 10 6 2.5158 -3.8915 -0.0133 11 6 1.9792 -5.3243 -0.0150 12 6 3.1512 -6.3078 -0.0209 13 7 2.6360 -7.6835 -0.0218 14 6 2.1169 -8.0559 1.3115 15 6 2.4283 -9.5670 1.4493 16 6 3.8081 -9.6680 0.7474 17 6 3.6905 -8.6423 -0.3997 18 1 3.4160 -9.1500 -1.3244 19 6 5.0000 -7.9190 -0.5814 20 6 5.6331 -7.2538 0.4543 21 6 6.7844 -6.6664 0.1245 22 16 7.1226 -6.9462 -1.5787 23 6 5.6395 -7.8760 -1.7512 24 1 -0.4850 0.8401 0.0040 25 1 3.1211 -3.7295 -0.9053 26 1 3.1277 -3.7334 0.8747 27 1 1.3736 -5.4865 0.8767 28 1 1.3675 -5.4822 -0.9032 29 1 3.7571 -6.1457 -0.9124 30 1 3.7626 -6.1498 0.8676 31 1 2.6293 -7.4903 2.0897 32 1 1.0417 -7.8838 1.3617 33 1 1.6816 -10.1684 0.9309 34 1 2.5013 -9.8572 2.4975 35 1 3.9671 -10.6714 0.3523 36 1 4.6099 -9.3906 1.4316 37 1 5.2259 -7.2135 1.4538 38 1 7.4127 -6.1048 0.7999 39 1 5.2982 -8.3397 -2.6648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074981663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:31:25 Heat of formation + Delta-G solvation = 12.347146 kcal Electronic energy + Delta-G solvation = -19341.002220 eV Core-core repulsion = 16500.286790 eV Total energy + Delta-G solvation = -2840.715431 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 297.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.28469 -37.73716 -35.47335 -34.60669 -31.75666 -31.37450 -28.99141 -27.87061 -26.38682 -24.67407 -23.04269 -22.17079 -21.25019 -19.63044 -19.50630 -18.34472 -17.20196 -16.90756 -16.62561 -16.39377 -15.98590 -15.64660 -15.05888 -14.74728 -14.35327 -14.04415 -13.83221 -13.67959 -13.47966 -13.30044 -13.20374 -12.98280 -12.86898 -12.76573 -12.35066 -12.27312 -12.17713 -11.98360 -11.69953 -11.53846 -11.47566 -11.30821 -11.16012 -10.32936 -9.84394 -9.35060 -9.11920 -8.67571 -8.38096 -6.14510 0.08906 0.75704 1.06641 1.30513 1.37454 1.48414 1.66745 1.74779 2.27309 2.96040 3.06616 3.33369 3.65730 3.81350 3.91996 4.00586 4.05486 4.21777 4.29110 4.39864 4.43534 4.46765 4.57156 4.62726 4.64479 4.74420 4.81667 4.89102 4.98713 5.06299 5.09372 5.14620 5.21506 5.30669 5.34952 5.38888 5.43699 5.54679 6.08409 6.10694 6.17577 7.04029 8.71737 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.003723 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.684746 B = 7518.031864 C = 8821.437588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.016 3.984 3 Si 0.994 3.006 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.539 4.539 8 H 0.071 0.929 9 S -0.195 6.195 10 C -0.083 4.083 11 C -0.080 4.080 12 C 0.073 3.927 13 N -0.528 5.528 14 C 0.033 3.967 15 C -0.121 4.121 16 C -0.127 4.127 17 C 0.129 3.871 18 H 0.095 0.905 19 C -0.117 4.117 20 C -0.134 4.134 21 C -0.218 4.218 22 S 0.092 5.908 23 C -0.211 4.211 24 H 0.272 0.728 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.138 0.862 38 H 0.177 0.823 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.987 -21.129 0.896 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.686 4.686 8 H 0.089 0.911 9 S 0.033 5.967 10 C -0.233 4.233 11 C -0.119 4.119 12 C -0.057 4.057 13 N -0.251 5.251 14 C -0.094 4.094 15 C -0.159 4.159 16 C -0.166 4.166 17 C 0.019 3.981 18 H 0.113 0.887 19 C -0.130 4.130 20 C -0.165 4.165 21 C -0.353 4.353 22 S 0.355 5.645 23 C -0.347 4.347 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.155 0.845 38 H 0.194 0.806 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 12.489 -20.796 -0.460 24.262 hybrid contribution 1.023 1.250 1.432 2.158 sum 13.512 -19.546 0.972 23.782 Atomic orbital electron populations 1.70164 1.07683 1.28502 1.48012 1.26062 0.96027 1.03056 0.93697 0.84972 0.78387 0.76645 0.78404 1.18750 1.19580 1.19486 1.23063 0.94660 0.92049 1.58872 0.91127 1.84630 1.13955 1.01071 1.97000 1.23110 1.00031 0.97728 1.02397 1.21137 0.98093 0.90366 1.02319 1.22280 0.94877 0.87681 1.00861 1.63762 1.32039 1.01607 1.27704 1.23204 1.00703 0.96645 0.88873 1.22691 0.96820 0.94598 1.01745 1.22846 0.97784 0.99487 0.96445 1.21293 0.84904 0.91748 1.00144 0.88665 1.19289 0.98612 1.02007 0.93096 1.20136 0.95409 1.00334 1.00608 1.25823 1.02386 1.08041 0.99078 1.84279 1.22966 1.50774 1.06446 1.25724 0.99448 1.07063 1.02455 0.91923 0.92554 0.92293 0.92081 0.92045 0.91459 0.93704 0.93834 0.90603 0.90050 0.89324 0.89086 0.91127 0.84450 0.80603 0.80447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.59 13.22 21.65 0.29 -55.31 16 2 C 0.02 0.96 5.49 84.86 0.47 1.42 16 3 Si 0.99 44.61 29.55 68.60 2.03 46.64 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -31.93 9.50 67.96 0.65 -31.29 16 8 H 0.07 4.06 7.80 -2.91 -0.02 4.03 16 9 S -0.20 -10.75 21.44 -56.49 -1.21 -11.96 16 10 C -0.08 -3.54 5.67 71.98 0.41 -3.13 16 11 C -0.08 -2.79 5.33 30.59 0.16 -2.63 16 12 C 0.07 2.04 3.42 86.30 0.29 2.33 16 13 N -0.53 -12.64 5.12 -864.88 -4.43 -17.06 16 14 C 0.03 0.70 6.07 86.77 0.53 1.22 16 15 C -0.12 -1.80 7.08 31.98 0.23 -1.57 16 16 C -0.13 -1.89 6.40 31.78 0.20 -1.69 16 17 C 0.13 2.49 3.70 44.51 0.16 2.66 16 18 H 0.10 1.76 8.03 -2.38 -0.02 1.75 16 19 C -0.12 -2.36 2.85 -20.92 -0.06 -2.42 16 20 C -0.13 -2.76 6.61 21.22 0.14 -2.62 16 21 C -0.22 -4.29 11.23 66.72 0.75 -3.55 16 22 S 0.09 1.76 23.34 -56.49 -1.32 0.44 16 23 C -0.21 -4.08 10.84 66.72 0.72 -3.35 16 24 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 25 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.06 2.46 8.14 -2.40 -0.02 2.44 16 27 H 0.06 2.14 7.70 -2.39 -0.02 2.12 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.00 6.48 -2.39 -0.02 1.98 16 30 H 0.04 1.23 5.35 -2.39 -0.01 1.22 16 31 H 0.04 0.94 7.53 -2.39 -0.02 0.92 16 32 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.07 6.97 -2.39 -0.02 1.06 16 37 H 0.14 2.73 7.07 -2.91 -0.02 2.71 16 38 H 0.18 2.85 8.06 -2.91 -0.02 2.82 16 39 H 0.18 2.80 8.06 -2.92 -0.02 2.77 16 Total: -1.00 -67.41 336.53 1.03 -66.38 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.02 Total: 15.49 kcal Atomic # 6 Polarization: -49.26 SS G_CDS: 4.65 Total: -44.61 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: -4.14 Total: -72.37 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -2.53 Total: -11.53 kcal Total: -67.41 1.03 -66.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.730 kcal (2) G-P(sol) polarization free energy of solvation -67.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds