Wall clock time and date at job start Fri Apr 10 2020 20:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35515 * 116.99779 * 2 1 4 4 C 1.39345 * 120.45460 * 180.02562 * 3 2 1 5 5 C 1.38395 * 118.49275 * 179.97438 * 4 3 2 6 6 Cl 1.73605 * 120.37900 * 179.97438 * 5 4 3 7 7 N 1.32568 * 119.24012 * 359.97438 * 5 4 3 8 8 C 1.32460 * 120.86285 * 0.04239 * 7 5 4 9 9 N 1.38396 * 119.18139 * 179.97438 * 8 7 5 10 10 C 1.46504 * 119.99605 * 359.97438 * 9 8 7 11 11 H 1.09000 * 109.41369 * 324.99504 * 10 9 8 12 12 C 1.52955 * 109.41427 * 84.85711 * 10 9 8 13 13 C 1.53244 * 109.40074 * 183.76909 * 12 10 9 14 14 C 1.51270 * 108.48286 * 305.26973 * 13 12 10 15 15 C 1.37875 * 120.84707 * 231.36405 * 14 13 12 16 16 N 1.31515 * 119.99702 * 180.02562 * 15 14 13 17 17 Si 1.86801 * 120.00010 * 0.02562 * 15 14 13 18 18 H 1.48496 * 109.47256 * 60.00391 * 17 15 14 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47260 * 299.99789 * 17 15 14 21 21 C 1.51269 * 118.30173 * 51.38509 * 14 13 12 22 22 C 1.52961 * 109.40860 * 205.13718 * 10 9 8 23 23 N 1.32481 * 121.63830 * 359.95568 * 8 7 5 24 24 H 1.08993 * 109.46945 * 60.00527 * 1 2 3 25 25 H 1.09003 * 109.47276 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47032 * 300.00149 * 1 2 3 27 27 H 1.08003 * 120.74764 * 359.69970 * 4 3 2 28 28 H 0.96992 * 120.00339 * 179.97438 * 9 8 7 29 29 H 1.08996 * 109.48425 * 303.67863 * 12 10 9 30 30 H 1.09001 * 109.48462 * 63.72457 * 12 10 9 31 31 H 1.08993 * 109.62174 * 185.58966 * 13 12 10 32 32 H 1.09006 * 109.84002 * 65.07604 * 13 12 10 33 33 H 0.97003 * 119.99817 * 179.97438 * 16 15 14 34 34 H 1.08997 * 109.62635 * 188.93665 * 21 14 13 35 35 H 1.08995 * 109.78415 * 68.46123 * 21 14 13 36 36 H 1.09004 * 109.48532 * 296.27405 * 22 10 9 37 37 H 1.09003 * 109.48489 * 56.31914 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4351 1.2915 -0.0005 5 6 4.0208 2.5454 -0.0011 6 17 5.7493 2.7071 -0.0011 7 7 3.2468 3.6216 -0.0016 8 6 1.9269 3.5094 -0.0007 9 7 1.1522 4.6562 -0.0007 10 6 1.7935 5.9734 -0.0011 11 1 2.7093 5.9306 0.5884 12 6 2.1320 6.3736 -1.4380 13 6 2.8867 7.7073 -1.4306 14 6 2.0553 8.7247 -0.6809 15 6 1.7689 9.9527 -1.2384 16 7 1.0449 10.8249 -0.5715 17 14 2.4094 10.3777 -2.9409 18 1 1.8777 9.4033 -3.9273 19 1 1.9657 11.7462 -3.3093 20 1 3.8933 10.3215 -2.9399 21 6 1.5465 8.3603 0.6963 22 6 0.8419 7.0022 0.6118 23 7 1.3301 2.3267 -0.0002 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 4.0423 0.3983 0.0039 28 1 0.1847 4.5879 -0.0005 29 1 2.7581 5.6053 -1.8915 30 1 1.2117 6.4788 -2.0125 31 1 3.0427 8.0454 -2.4550 32 1 3.8497 7.5847 -0.9348 33 1 0.8438 11.6890 -0.9636 34 1 0.8414 9.1179 1.0384 35 1 2.3820 8.2966 1.3934 36 1 -0.0472 7.0922 -0.0123 37 1 0.5531 6.6797 1.6122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167840708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:31:15 Heat of formation + Delta-G solvation = -0.197675 kcal Electronic energy + Delta-G solvation = -21668.161437 eV Core-core repulsion = 18278.565101 eV Total energy + Delta-G solvation = -3389.596336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.098 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.17615 -38.83789 -37.53614 -36.78292 -34.40524 -33.02315 -31.96329 -30.43472 -29.64323 -27.63523 -27.07304 -23.82056 -23.56504 -21.71503 -21.47965 -19.59305 -18.74662 -18.21718 -16.48160 -16.38665 -15.88745 -15.52020 -15.31069 -14.79758 -14.63457 -14.44376 -14.19690 -13.33065 -12.88261 -12.61946 -12.32355 -12.24707 -12.11938 -11.89230 -11.58190 -11.45871 -11.05398 -10.93074 -10.82540 -10.66967 -10.20750 -10.18116 -10.03653 -9.83216 -9.48953 -9.33738 -9.00829 -8.73177 -8.49554 -7.89102 -6.12816 -4.03662 0.97603 1.22615 1.50462 2.81201 3.06675 3.28932 3.35334 3.37275 3.79818 4.28777 4.37435 4.73465 5.00594 5.08893 5.10213 5.16266 5.19134 5.36888 5.64321 5.71197 5.82386 6.16292 6.44153 6.53488 6.66561 6.68083 6.74614 6.85045 6.94729 7.02602 7.04681 7.26239 7.40847 7.58711 7.61828 7.69119 7.81005 8.33752 8.35808 8.93260 9.52311 10.96839 Molecular weight = 297.10amu Principal moments of inertia in cm(-1) A = 0.019282 B = 0.004098 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.808257 B = 6830.480345 C = 7649.792824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.299 6.299 3 C 0.415 3.585 4 C -0.304 4.304 5 C 0.293 3.707 6 Cl -0.012 7.012 7 N -0.573 5.573 8 C 0.622 3.378 9 N -0.678 5.678 10 C 0.165 3.835 11 H 0.086 0.914 12 C -0.112 4.112 13 C -0.007 4.007 14 C -0.490 4.490 15 C 0.077 3.923 16 N -0.890 5.890 17 Si 0.891 3.109 18 H -0.275 1.275 19 H -0.292 1.292 20 H -0.274 1.274 21 C 0.015 3.985 22 C -0.115 4.115 23 N -0.628 5.628 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.062 0.938 27 H 0.154 0.846 28 H 0.410 0.590 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.025 0.975 32 H 0.023 0.977 33 H 0.265 0.735 34 H 0.061 0.939 35 H 0.007 0.993 36 H 0.055 0.945 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.107 -19.229 1.313 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.203 6.203 3 C 0.225 3.775 4 C -0.333 4.333 5 C 0.119 3.881 6 Cl 0.017 6.983 7 N -0.303 5.303 8 C 0.265 3.735 9 N -0.310 5.310 10 C 0.062 3.938 11 H 0.104 0.896 12 C -0.151 4.151 13 C -0.045 4.045 14 C -0.509 4.509 15 C -0.125 4.125 16 N -0.528 5.528 17 Si 0.719 3.281 18 H -0.201 1.201 19 H -0.219 1.219 20 H -0.199 1.199 21 C -0.023 4.023 22 C -0.154 4.154 23 N -0.368 5.368 24 H 0.081 0.919 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.172 0.828 28 H 0.247 0.753 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.757 -18.282 1.317 18.345 hybrid contribution 0.253 -0.387 -1.026 1.125 sum 1.011 -18.670 0.291 18.699 Atomic orbital electron populations 1.22951 0.76559 1.03170 1.03021 1.86229 1.23455 1.23791 1.86791 1.19442 0.88416 0.84142 0.85485 1.20984 0.92670 0.98621 1.21014 1.21207 0.87950 0.88382 0.90572 1.98426 1.05819 1.98216 1.95884 1.67328 1.04329 1.32561 1.26059 1.18675 0.84132 0.85183 0.85527 1.45048 1.08229 1.02516 1.75205 1.21206 0.96713 0.77675 0.98159 0.89593 1.21918 0.99946 0.98471 0.94761 1.19582 0.95955 0.92594 0.96381 1.20028 1.31415 0.98324 1.01168 1.24826 0.94492 0.95755 0.97465 1.69819 1.37616 1.07300 1.38023 0.86657 0.79671 0.77013 0.84743 1.20052 1.21876 1.19920 1.19321 0.95993 0.91191 0.95779 1.21975 0.98358 0.97563 0.97484 1.67504 1.40914 0.97859 1.30562 0.91877 0.88335 0.91889 0.82814 0.75255 0.94414 0.93136 0.95687 0.95908 0.92497 0.92024 0.97432 0.92624 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.41 101.05 1.05 1.38 16 2 O -0.30 -3.44 10.49 -18.24 -0.19 -3.63 16 3 C 0.41 5.63 7.53 -16.74 -0.13 5.51 16 4 C -0.30 -3.92 9.92 -39.11 -0.39 -4.30 16 5 C 0.29 4.27 7.33 -17.18 -0.13 4.14 16 6 Cl -0.01 -0.15 29.15 -51.86 -1.51 -1.66 16 7 N -0.57 -9.75 9.19 -11.10 -0.10 -9.85 16 8 C 0.62 10.28 8.40 -322.88 -2.71 7.57 16 9 N -0.68 -11.08 5.22 -55.85 -0.29 -11.37 16 10 C 0.17 3.12 2.34 -67.97 -0.16 2.96 16 11 H 0.09 1.75 7.50 -51.93 -0.39 1.36 16 12 C -0.11 -2.29 5.51 -26.63 -0.15 -2.44 16 13 C -0.01 -0.16 5.60 -27.48 -0.15 -0.31 16 14 C -0.49 -12.61 5.51 -98.92 -0.55 -13.16 16 15 C 0.08 2.08 5.46 -17.82 -0.10 1.99 16 16 N -0.89 -25.15 12.73 55.43 0.71 -24.44 16 17 Si 0.89 21.16 26.80 -169.99 -4.56 16.61 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.02 0.36 5.97 -27.48 -0.16 0.20 16 22 C -0.12 -2.29 5.40 -26.63 -0.14 -2.44 16 23 N -0.63 -9.37 9.40 -14.01 -0.13 -9.51 16 24 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.55 8.12 -51.92 -0.42 0.13 16 27 H 0.15 1.58 8.06 -52.48 -0.42 1.15 16 28 H 0.41 5.96 8.71 -40.82 -0.36 5.60 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.02 0.58 5.17 -51.93 -0.27 0.31 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 34 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 35 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 321.73 15.07 4.85 4.85 Total: -1.00 -28.20 321.73 -9.68 -37.88 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.74 Total: 0.04 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -3.71 Total: 1.09 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.18 Total: -55.17 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.19 Total: -3.63 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.56 Total: 16.61 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.51 Total: -1.66 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.20 -9.68 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167840708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.683 kcal (2) G-P(sol) polarization free energy of solvation -28.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds