Wall clock time and date at job start Fri Apr 10 2020 20:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35515 * 116.99779 * 2 1 4 4 C 1.39345 * 120.45460 * 180.02562 * 3 2 1 5 5 C 1.38395 * 118.49275 * 179.97438 * 4 3 2 6 6 Cl 1.73605 * 120.37900 * 179.97438 * 5 4 3 7 7 N 1.32568 * 119.24012 * 359.97438 * 5 4 3 8 8 C 1.32460 * 120.86285 * 0.04239 * 7 5 4 9 9 N 1.38396 * 119.18139 * 179.97438 * 8 7 5 10 10 C 1.46504 * 119.99605 * 359.97438 * 9 8 7 11 11 H 1.09000 * 109.41369 * 324.99504 * 10 9 8 12 12 C 1.52955 * 109.41427 * 84.85711 * 10 9 8 13 13 C 1.53244 * 109.40074 * 183.76909 * 12 10 9 14 14 C 1.51270 * 108.48286 * 305.26973 * 13 12 10 15 15 C 1.37875 * 120.84707 * 231.36405 * 14 13 12 16 16 N 1.31515 * 119.99702 * 180.02562 * 15 14 13 17 17 Si 1.86801 * 120.00010 * 0.02562 * 15 14 13 18 18 H 1.48496 * 109.47256 * 60.00391 * 17 15 14 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47260 * 299.99789 * 17 15 14 21 21 C 1.51269 * 118.30173 * 51.38509 * 14 13 12 22 22 C 1.52961 * 109.40860 * 205.13718 * 10 9 8 23 23 N 1.32481 * 121.63830 * 359.95568 * 8 7 5 24 24 H 1.08993 * 109.46945 * 60.00527 * 1 2 3 25 25 H 1.09003 * 109.47276 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47032 * 300.00149 * 1 2 3 27 27 H 1.08003 * 120.74764 * 359.69970 * 4 3 2 28 28 H 0.96992 * 120.00339 * 179.97438 * 9 8 7 29 29 H 1.08996 * 109.48425 * 303.67863 * 12 10 9 30 30 H 1.09001 * 109.48462 * 63.72457 * 12 10 9 31 31 H 1.08993 * 109.62174 * 185.58966 * 13 12 10 32 32 H 1.09006 * 109.84002 * 65.07604 * 13 12 10 33 33 H 0.97003 * 119.99817 * 179.97438 * 16 15 14 34 34 H 1.08997 * 109.62635 * 188.93665 * 21 14 13 35 35 H 1.08995 * 109.78415 * 68.46123 * 21 14 13 36 36 H 1.09004 * 109.48532 * 296.27405 * 22 10 9 37 37 H 1.09003 * 109.48489 * 56.31914 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4351 1.2915 -0.0005 5 6 4.0208 2.5454 -0.0011 6 17 5.7493 2.7071 -0.0011 7 7 3.2468 3.6216 -0.0016 8 6 1.9269 3.5094 -0.0007 9 7 1.1522 4.6562 -0.0007 10 6 1.7935 5.9734 -0.0011 11 1 2.7093 5.9306 0.5884 12 6 2.1320 6.3736 -1.4380 13 6 2.8867 7.7073 -1.4306 14 6 2.0553 8.7247 -0.6809 15 6 1.7689 9.9527 -1.2384 16 7 1.0449 10.8249 -0.5715 17 14 2.4094 10.3777 -2.9409 18 1 1.8777 9.4033 -3.9273 19 1 1.9657 11.7462 -3.3093 20 1 3.8933 10.3215 -2.9399 21 6 1.5465 8.3603 0.6963 22 6 0.8419 7.0022 0.6118 23 7 1.3301 2.3267 -0.0002 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 4.0423 0.3983 0.0039 28 1 0.1847 4.5879 -0.0005 29 1 2.7581 5.6053 -1.8915 30 1 1.2117 6.4788 -2.0125 31 1 3.0427 8.0454 -2.4550 32 1 3.8497 7.5847 -0.9348 33 1 0.8438 11.6890 -0.9636 34 1 0.8414 9.1179 1.0384 35 1 2.3820 8.2966 1.3934 36 1 -0.0472 7.0922 -0.0123 37 1 0.5531 6.6797 1.6122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167840708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:31:15 Heat of formation + Delta-G solvation = -16.713167 kcal Electronic energy + Delta-G solvation = -21668.877602 eV Core-core repulsion = 18278.565101 eV Total energy + Delta-G solvation = -3390.312501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.098 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.27784 -39.89422 -38.97412 -37.88448 -35.93221 -34.21827 -33.63394 -31.82595 -31.32183 -28.84566 -28.36020 -24.94809 -24.87400 -23.36876 -23.19461 -21.23470 -19.84588 -19.39012 -18.06537 -17.35007 -17.30742 -16.57683 -16.46874 -16.41212 -15.92746 -15.82362 -15.18341 -15.03739 -14.57459 -14.28029 -13.96180 -13.63732 -13.37099 -12.93276 -12.91206 -12.75376 -12.56244 -12.50229 -12.45313 -12.04949 -11.94018 -11.76155 -11.59389 -11.22893 -10.92670 -10.72859 -10.55818 -10.49178 -10.46602 -9.14600 -8.16743 -6.10125 -0.13186 0.12392 0.45736 1.39868 1.41777 1.49002 1.72249 2.00568 2.41345 2.65692 3.11561 3.24039 3.58054 4.01752 4.09409 4.11078 4.19948 4.41960 4.44254 4.52773 4.63070 4.71722 4.80679 4.92152 4.96902 5.08027 5.18241 5.22957 5.28795 5.57876 5.60383 5.64813 5.76065 5.81407 5.91095 5.99167 6.34932 6.42530 6.95394 7.17293 7.47996 8.94037 Molecular weight = 297.10amu Principal moments of inertia in cm(-1) A = 0.019282 B = 0.004098 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.808257 B = 6830.480345 C = 7649.792824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.297 6.297 3 C 0.409 3.591 4 C -0.289 4.289 5 C 0.279 3.721 6 Cl 0.000 7.000 7 N -0.602 5.602 8 C 0.612 3.388 9 N -0.677 5.677 10 C 0.184 3.816 11 H 0.073 0.927 12 C -0.102 4.102 13 C -0.009 4.009 14 C -0.498 4.498 15 C 0.027 3.973 16 N -0.928 5.928 17 Si 0.938 3.062 18 H -0.267 1.267 19 H -0.293 1.293 20 H -0.269 1.269 21 C 0.011 3.989 22 C -0.102 4.102 23 N -0.627 5.627 24 H 0.059 0.941 25 H 0.132 0.868 26 H 0.060 0.940 27 H 0.182 0.818 28 H 0.419 0.581 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.024 0.976 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.033 0.967 35 H 0.002 0.998 36 H 0.053 0.947 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.334 -21.867 0.787 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.200 6.200 3 C 0.219 3.781 4 C -0.317 4.317 5 C 0.106 3.894 6 Cl 0.029 6.971 7 N -0.332 5.332 8 C 0.254 3.746 9 N -0.311 5.311 10 C 0.080 3.920 11 H 0.091 0.909 12 C -0.142 4.142 13 C -0.047 4.047 14 C -0.518 4.518 15 C -0.172 4.172 16 N -0.568 5.568 17 Si 0.765 3.235 18 H -0.193 1.193 19 H -0.220 1.220 20 H -0.194 1.194 21 C -0.027 4.027 22 C -0.141 4.141 23 N -0.368 5.368 24 H 0.078 0.922 25 H 0.150 0.850 26 H 0.079 0.921 27 H 0.199 0.801 28 H 0.258 0.742 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.020 0.980 36 H 0.072 0.928 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.001 -20.989 0.787 21.028 hybrid contribution 0.216 0.273 -0.797 0.870 sum 1.217 -20.716 -0.010 20.752 Atomic orbital electron populations 1.23224 0.74878 1.05370 1.02707 1.86256 1.25049 1.22424 1.86290 1.19704 0.88904 0.84413 0.85063 1.21279 0.92782 0.98964 1.18715 1.21465 0.88494 0.88558 0.90844 1.98428 1.04643 1.98217 1.95804 1.67285 1.04818 1.34003 1.27142 1.18687 0.84167 0.85514 0.86208 1.44625 1.08517 1.01635 1.76351 1.20712 0.95918 0.78710 0.96641 0.90891 1.21771 0.99432 0.97018 0.95946 1.19586 0.95806 0.93408 0.95879 1.20595 1.30708 0.98634 1.01822 1.25515 0.95142 0.96002 1.00494 1.69942 1.39623 1.07733 1.39522 0.85873 0.79330 0.76766 0.81486 1.19250 1.21997 1.19415 1.19269 0.95455 0.92880 0.95050 1.21732 0.97893 0.95598 0.98871 1.67488 1.41085 0.97767 1.30492 0.92237 0.84954 0.92121 0.80092 0.74237 0.93760 0.93425 0.95743 0.96007 0.92761 0.94877 0.97972 0.92793 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.41 113.37 1.18 1.64 16 2 O -0.30 -5.97 10.49 -88.18 -0.93 -6.90 16 3 C 0.41 10.09 7.53 84.82 0.64 10.73 16 4 C -0.29 -6.69 9.92 22.57 0.22 -6.47 16 5 C 0.28 7.60 7.33 84.62 0.62 8.22 16 6 Cl 0.00 0.01 29.15 -2.72 -0.08 -0.07 16 7 N -0.60 -19.61 9.19 -189.03 -1.74 -21.35 16 8 C 0.61 19.25 8.40 261.51 2.20 21.45 16 9 N -0.68 -21.15 5.22 -330.61 -1.72 -22.87 16 10 C 0.18 6.78 2.34 44.96 0.11 6.89 16 11 H 0.07 2.92 7.50 -2.39 -0.02 2.90 16 12 C -0.10 -4.08 5.51 30.66 0.17 -3.91 16 13 C -0.01 -0.39 5.60 30.11 0.17 -0.23 16 14 C -0.50 -25.78 5.51 -16.17 -0.09 -25.87 16 15 C 0.03 1.47 5.46 84.65 0.46 1.93 16 16 N -0.93 -53.72 12.73 21.45 0.27 -53.45 16 17 Si 0.94 43.46 26.80 68.60 1.84 45.30 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 C 0.01 0.56 5.97 30.11 0.18 0.74 16 22 C -0.10 -4.01 5.40 30.66 0.17 -3.85 16 23 N -0.63 -17.51 9.40 -310.92 -2.92 -20.43 16 24 H 0.06 0.92 8.12 -2.39 -0.02 0.90 16 25 H 0.13 0.99 8.14 -2.39 -0.02 0.98 16 26 H 0.06 0.92 8.12 -2.38 -0.02 0.90 16 27 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 28 H 0.42 11.49 8.71 -92.71 -0.81 10.68 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.02 1.10 5.17 -2.39 -0.01 1.09 16 32 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.03 1.78 7.07 -2.39 -0.02 1.76 16 35 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -60.25 321.73 1.04 -59.20 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.30 Total: 9.30 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 6.02 Total: 11.27 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -6.11 Total: -118.10 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.93 Total: -6.90 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.84 Total: 45.30 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.08 Total: -0.07 kcal Total: -60.25 1.04 -59.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167840708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.492 kcal (2) G-P(sol) polarization free energy of solvation -60.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds