Wall clock time and date at job start Fri Apr 10 2020 20:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35804 * 116.99707 * 2 1 4 4 C 1.38223 * 120.13087 * 0.20365 * 3 2 1 5 5 C 1.39699 * 119.80782 * 180.27927 * 4 3 2 6 6 C 1.43206 * 119.97670 * 179.72353 * 5 4 3 7 7 N 5.83967 * 81.33147 * 359.95535 * 2 1 3 8 8 C 1.39902 * 120.05423 * 359.74560 * 5 4 3 9 9 C 1.36510 * 120.25320 * 0.02562 * 8 5 4 10 10 C 1.39771 * 120.19275 * 359.97415 * 9 8 5 11 11 C 1.47684 * 120.02934 * 179.97438 * 10 9 8 12 12 C 1.40082 * 119.90570 * 64.99988 * 11 10 9 13 13 C 1.36162 * 120.13228 * 180.02562 * 12 11 10 14 14 C 1.41025 * 119.93465 * 0.25579 * 13 12 11 15 15 C 1.40949 * 120.08954 * 179.72707 * 14 13 12 16 16 H 1.07997 * 119.99597 * 204.73654 * 15 14 13 17 17 C 1.40029 * 120.00264 * 24.73356 * 15 14 13 18 18 N 1.30785 * 119.99906 * 17.97355 * 17 15 14 19 19 Si 1.86796 * 120.00284 * 197.97569 * 17 15 14 20 20 H 1.48501 * 109.47179 * 94.68652 * 19 17 15 21 21 H 1.48497 * 109.47503 * 214.69204 * 19 17 15 22 22 H 1.48507 * 109.47037 * 334.69144 * 19 17 15 23 23 C 1.40901 * 119.81679 * 359.50905 * 14 13 12 24 24 C 1.36419 * 119.86703 * 0.46992 * 23 14 13 25 25 F 1.35097 * 119.97189 * 179.76141 * 24 23 14 26 26 H 1.09005 * 109.46853 * 60.00030 * 1 2 3 27 27 H 1.09000 * 109.47455 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46882 * 300.00533 * 1 2 3 29 29 H 1.07999 * 120.09879 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.87970 * 179.97438 * 8 5 4 31 31 H 1.07997 * 119.90321 * 179.97438 * 9 8 5 32 32 H 1.08001 * 119.93327 * 0.04608 * 12 11 10 33 33 H 1.07999 * 120.03118 * 179.97438 * 13 12 11 34 34 H 0.96994 * 120.00101 * 180.02562 * 18 17 15 35 35 H 1.08000 * 120.06840 * 180.23089 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.2953 2.3710 0.0042 5 6 1.9365 3.6121 -0.0017 6 6 1.1627 4.8172 -0.0033 7 7 0.5489 5.7730 -0.0045 8 6 3.3339 3.6789 -0.0065 9 6 4.0771 2.5339 -0.0060 10 6 3.4465 1.2865 -0.0001 11 6 4.2541 0.0501 -0.0001 12 6 5.0703 -0.2511 1.0979 13 6 5.8172 -1.3896 1.1025 14 6 5.7732 -2.2646 -0.0026 15 6 6.5495 -3.4410 -0.0037 16 1 6.8408 -3.8948 -0.9395 17 6 6.9430 -4.0215 1.2083 18 7 6.3247 -3.7044 2.3163 19 14 8.3510 -5.2485 1.2427 20 1 9.6153 -4.5420 1.5710 21 1 8.0805 -6.2836 2.2725 22 1 8.4766 -5.8953 -0.0882 23 6 4.9477 -1.9618 -1.1036 24 6 4.2023 -0.8192 -1.0998 25 9 3.4137 -0.5244 -2.1564 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2166 2.3187 0.0080 30 1 3.8266 4.6400 -0.0115 31 1 5.1555 2.5920 -0.0102 32 1 5.1068 0.4209 1.9426 33 1 6.4461 -1.6199 1.9497 34 1 6.5975 -4.1062 3.1560 35 1 4.9081 -2.6309 -1.9504 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241402607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:31:30 Heat of formation + Delta-G solvation = -25.872294 kcal Electronic energy + Delta-G solvation = -22439.511651 eV Core-core repulsion = 18895.481773 eV Total energy + Delta-G solvation = -3544.029877 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.48996 -41.21905 -39.20237 -38.72032 -37.30110 -35.64928 -33.36923 -31.36913 -31.15042 -30.41675 -28.20682 -27.43615 -24.55294 -23.30393 -22.66274 -22.22464 -20.37608 -19.52831 -17.85120 -17.66325 -17.09324 -16.95085 -16.84497 -16.64866 -16.28120 -16.04854 -15.28383 -15.04369 -14.97242 -14.81915 -14.64702 -14.21370 -13.99860 -13.82707 -13.61748 -13.31588 -13.20619 -12.82197 -12.78054 -12.51721 -12.44162 -12.28371 -11.97282 -11.92136 -11.79045 -11.33689 -11.01635 -9.98106 -9.51303 -9.26814 -8.91948 -8.71113 -6.41001 -0.33056 0.47550 0.81469 1.02940 1.42630 1.51683 1.56025 1.56288 1.92600 2.20758 2.45580 2.62443 2.80414 2.88643 3.58577 3.85122 3.86719 3.93857 4.16578 4.21767 4.40316 4.42350 4.46083 4.63506 4.73846 4.79596 4.94541 5.00746 5.11059 5.13571 5.23939 5.27866 5.47036 5.68079 5.70867 5.78019 6.03905 6.05050 6.26180 6.38769 6.52972 6.61147 6.83610 6.91940 8.23951 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.027058 B = 0.003696 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.579255 B = 7573.823051 C = 7869.820353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.328 6.328 3 C 0.117 3.883 4 C -0.153 4.153 5 C -0.011 4.011 6 C 0.287 3.713 7 N -0.458 5.458 8 C -0.089 4.089 9 C -0.079 4.079 10 C -0.024 4.024 11 C -0.217 4.217 12 C -0.053 4.053 13 C -0.193 4.193 14 C 0.112 3.888 15 C -0.482 4.482 16 H 0.080 0.920 17 C 0.040 3.960 18 N -0.805 5.805 19 Si 0.985 3.015 20 H -0.259 1.259 21 H -0.267 1.267 22 H -0.260 1.260 23 C -0.289 4.289 24 C 0.143 3.857 25 F -0.160 7.160 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.155 0.845 30 H 0.162 0.838 31 H 0.152 0.848 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.294 0.706 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.440 6.859 -0.303 8.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.241 6.241 3 C 0.072 3.928 4 C -0.174 4.174 5 C -0.015 4.015 6 C -0.028 4.028 7 N -0.134 5.134 8 C -0.109 4.109 9 C -0.097 4.097 10 C -0.026 4.026 11 C -0.219 4.219 12 C -0.071 4.071 13 C -0.212 4.212 14 C 0.109 3.891 15 C -0.510 4.510 16 H 0.098 0.902 17 C -0.178 4.178 18 N -0.429 5.429 19 Si 0.805 3.195 20 H -0.183 1.183 21 H -0.191 1.191 22 H -0.183 1.183 23 C -0.309 4.309 24 C 0.124 3.876 25 F -0.138 7.138 26 H 0.086 0.914 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.173 0.827 30 H 0.179 0.821 31 H 0.169 0.831 32 H 0.142 0.858 33 H 0.131 0.869 34 H 0.105 0.895 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.391 8.097 -0.090 9.728 hybrid contribution 0.243 -1.165 -0.192 1.206 sum -5.148 6.932 -0.283 8.639 Atomic orbital electron populations 1.23360 0.76869 1.05274 1.02406 1.86223 1.23036 1.26624 1.88262 1.19129 0.91687 0.84655 0.97368 1.21193 1.00927 0.89808 1.05506 1.15746 0.92053 0.86017 1.07658 1.25632 0.92387 0.92403 0.92332 1.81250 1.09815 1.11736 1.10625 1.20935 0.90845 0.99903 0.99242 1.21005 1.01302 0.89357 0.98045 1.18518 0.89634 0.93746 1.00690 1.17987 1.09135 0.98074 0.96731 1.20534 0.94451 0.96330 0.95777 1.21013 1.04453 0.95099 1.00665 1.17720 0.88495 0.92413 0.90494 1.19885 1.28732 1.08040 0.94360 0.90163 1.26804 0.98142 0.98796 0.94032 1.69832 1.34853 1.37428 1.00828 0.85138 0.77623 0.77298 0.79416 1.18305 1.19141 1.18326 1.20697 1.06668 0.99936 1.03587 1.17307 0.91350 0.94816 0.84110 1.91332 1.73072 1.93592 1.55854 0.91397 0.87397 0.91054 0.82730 0.82080 0.83065 0.85807 0.86903 0.89455 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -10.96 9.62 -91.35 -0.88 -11.84 16 3 C 0.12 3.67 6.46 22.77 0.15 3.81 16 4 C -0.15 -3.71 8.74 22.62 0.20 -3.51 16 5 C -0.01 -0.25 5.74 -21.28 -0.12 -0.37 16 6 C 0.29 6.73 15.32 88.33 1.35 8.09 16 7 N -0.46 -12.44 18.54 19.00 0.35 -12.09 16 8 C -0.09 -1.88 9.68 22.27 0.22 -1.66 16 9 C -0.08 -2.08 9.66 22.24 0.21 -1.86 16 10 C -0.02 -0.83 5.01 -19.91 -0.10 -0.93 16 11 C -0.22 -9.06 4.96 -19.84 -0.10 -9.16 16 12 C -0.05 -2.24 9.66 22.23 0.21 -2.03 16 13 C -0.19 -9.38 8.63 22.47 0.19 -9.19 16 14 C 0.11 5.75 5.57 -21.28 -0.12 5.63 16 15 C -0.48 -24.48 9.03 23.37 0.21 -24.27 16 16 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 17 C 0.04 1.88 5.13 85.28 0.44 2.31 16 18 N -0.81 -38.81 10.96 21.84 0.24 -38.57 16 19 Si 0.98 35.16 29.60 68.60 2.03 37.19 16 20 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 21 H -0.27 -9.07 7.11 99.48 0.71 -8.36 16 22 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 23 C -0.29 -14.28 9.70 22.50 0.22 -14.06 16 24 C 0.14 6.58 6.88 22.34 0.15 6.74 16 25 F -0.16 -7.04 16.57 44.97 0.75 -6.29 16 26 H 0.07 1.23 7.67 -2.38 -0.02 1.21 16 27 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.07 1.24 7.65 -2.39 -0.02 1.22 16 29 H 0.16 2.94 6.30 -2.91 -0.02 2.92 16 30 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.11 5.63 6.16 -2.91 -0.02 5.61 16 34 H 0.29 12.65 8.29 -92.71 -0.77 11.88 16 35 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -59.38 320.95 7.86 -51.51 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 1.14 Total: 19.10 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 4.23 Total: -39.01 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.59 Total: -50.65 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.88 Total: -11.84 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 0.75 Total: -6.29 kcal Atomic # 14 Polarization: 35.16 SS G_CDS: 2.03 Total: 37.19 kcal Total: -59.38 7.86 -51.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241402607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.642 kcal (2) G-P(sol) polarization free energy of solvation -59.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds