Wall clock time and date at job start Fri Apr 10 2020 20:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99622 * 2 1 4 4 H 1.48493 * 109.47097 * 269.99971 * 3 2 1 5 5 H 1.48509 * 109.46947 * 29.99906 * 3 2 1 6 6 H 1.48500 * 109.47176 * 149.99685 * 3 2 1 7 7 C 1.38945 * 120.00488 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00252 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00045 * 180.02562 * 9 7 2 11 11 O 1.21286 * 119.99865 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00031 * 179.97438 * 10 9 7 13 13 H 1.09004 * 109.47370 * 59.99876 * 12 10 9 14 14 O 1.42897 * 109.47249 * 179.97438 * 12 10 9 15 15 C 1.35898 * 117.00535 * 204.48610 * 14 12 10 16 16 C 1.38730 * 120.05847 * 174.37163 * 15 14 12 17 17 C 1.38146 * 119.94101 * 180.29536 * 16 15 14 18 18 C 1.38261 * 120.05972 * 359.95609 * 17 16 15 19 19 C 1.38272 * 120.11157 * 0.04584 * 18 17 16 20 20 C 1.38143 * 120.05094 * 359.97247 * 19 18 17 21 21 C 1.50696 * 109.47445 * 299.99844 * 12 10 9 22 22 C 1.38237 * 119.99984 * 279.72787 * 21 12 10 23 23 C 1.38229 * 120.00177 * 179.78140 * 22 21 12 24 24 C 1.38237 * 120.00228 * 0.44531 * 23 22 21 25 25 C 1.38240 * 119.99587 * 359.80799 * 24 23 22 26 26 C 1.38233 * 120.00042 * 359.97438 * 25 24 23 27 27 H 0.96998 * 120.00549 * 0.02562 * 1 2 3 28 28 H 0.96997 * 119.99821 * 359.97438 * 9 7 2 29 29 H 1.07996 * 120.02813 * 0.25271 * 16 15 14 30 30 H 1.07998 * 119.96930 * 179.97438 * 17 16 15 31 31 H 1.08002 * 119.94471 * 180.02562 * 18 17 16 32 32 H 1.07999 * 119.97141 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.02046 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.99844 * 359.97438 * 22 21 12 35 35 H 1.08001 * 120.00313 * 180.27028 * 23 22 21 36 36 H 1.07993 * 120.00576 * 179.82703 * 24 23 22 37 37 H 1.07999 * 120.00029 * 180.02562 * 25 24 23 38 38 H 1.08003 * 120.00130 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5456 1.4404 0.7001 7 6 2.0090 -1.2032 0.0005 8 1 3.0890 -1.2032 0.0010 9 7 1.3236 -2.3906 0.0005 10 6 1.9975 -3.5578 0.0016 11 8 3.2104 -3.5577 0.0021 12 6 1.2441 -4.8629 0.0022 13 1 0.6178 -4.9213 -0.8880 14 8 2.1728 -5.9490 0.0027 15 6 1.7363 -7.1343 -0.4987 16 6 2.6174 -8.1969 -0.6371 17 6 2.1725 -9.3988 -1.1527 18 6 0.8502 -9.5436 -1.5297 19 6 -0.0300 -8.4861 -1.3928 20 6 0.4101 -7.2820 -0.8782 21 6 0.3773 -4.9420 1.2323 22 6 0.9306 -5.3068 2.4455 23 6 0.1364 -5.3750 3.5748 24 6 -1.2130 -5.0875 3.4892 25 6 -1.7674 -4.7278 2.2750 26 6 -0.9723 -4.6552 1.1466 27 1 -0.4851 0.8400 -0.0004 28 1 0.3536 -2.3906 0.0005 29 1 3.6503 -8.0843 -0.3427 30 1 2.8581 -10.2262 -1.2610 31 1 0.5043 -10.4843 -1.9322 32 1 -1.0623 -8.6015 -1.6885 33 1 -0.2777 -6.4561 -0.7718 34 1 1.9841 -5.5354 2.5115 35 1 0.5696 -5.6557 4.5235 36 1 -1.8341 -5.1435 4.3709 37 1 -2.8216 -4.5027 2.2082 38 1 -1.4053 -4.3738 0.1980 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355689708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:31:11 Heat of formation + Delta-G solvation = -18.243911 kcal Electronic energy + Delta-G solvation = -23314.281620 eV Core-core repulsion = 19894.042839 eV Total energy + Delta-G solvation = -3420.238781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46266 -38.87278 -37.93622 -36.82784 -34.00930 -32.28434 -31.12243 -30.78620 -30.64311 -29.64140 -27.11595 -24.71035 -22.67919 -22.42336 -22.12043 -21.39486 -19.35532 -18.18185 -17.97762 -16.94288 -16.15833 -15.92816 -15.54312 -15.30577 -14.70214 -14.29422 -14.25600 -14.11761 -13.92920 -13.46251 -13.33559 -13.14963 -13.02844 -12.53883 -12.35450 -11.89863 -11.62427 -11.54543 -11.50425 -11.13901 -10.92908 -10.64980 -10.57021 -10.43779 -10.29425 -9.59875 -8.96454 -8.90334 -8.67824 -8.25322 -8.06990 -8.01390 -6.49728 -3.90826 1.40855 1.50306 1.55106 1.64578 3.12642 3.19123 3.24168 3.34214 3.69793 3.88874 3.99290 4.17885 4.80161 4.87754 4.94263 5.01613 5.06666 5.17518 5.18926 5.22683 5.32942 5.42379 5.47201 5.57253 5.69104 5.73169 5.83462 6.06488 6.07985 6.15359 6.25169 6.42421 6.49863 6.58260 6.63965 6.70759 6.74564 6.89958 7.19399 7.48000 7.62166 7.95138 8.49427 9.07531 9.40268 9.90382 10.67338 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.015606 B = 0.004786 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.785735 B = 5849.201326 C = 6820.327610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.027 3.973 3 Si 0.932 3.068 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.301 4.301 8 H 0.106 0.894 9 N -0.546 5.546 10 C 0.447 3.553 11 O -0.571 6.571 12 C 0.120 3.880 13 H 0.091 0.909 14 O -0.274 6.274 15 C 0.139 3.861 16 C -0.154 4.154 17 C -0.084 4.084 18 C -0.168 4.168 19 C -0.081 4.081 20 C -0.208 4.208 21 C -0.105 4.105 22 C -0.086 4.086 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.118 4.118 26 C -0.105 4.105 27 H 0.273 0.727 28 H 0.394 0.606 29 H 0.130 0.870 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 -14.660 1.477 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.430 4.430 8 H 0.124 0.876 9 N -0.183 5.183 10 C 0.231 3.769 11 O -0.455 6.455 12 C 0.059 3.941 13 H 0.109 0.891 14 O -0.185 6.185 15 C 0.092 3.908 16 C -0.173 4.173 17 C -0.102 4.102 18 C -0.186 4.186 19 C -0.099 4.099 20 C -0.227 4.227 21 C -0.106 4.106 22 C -0.104 4.104 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.136 4.136 26 C -0.123 4.123 27 H 0.083 0.917 28 H 0.228 0.772 29 H 0.148 0.852 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.407 -14.419 1.561 15.158 hybrid contribution -0.536 0.958 -0.024 1.098 sum -4.943 -13.461 1.538 14.422 Atomic orbital electron populations 1.69612 1.05973 1.28420 1.49573 1.25287 0.95670 0.99782 0.96861 0.85823 0.79301 0.80490 0.78511 1.20238 1.20795 1.19263 1.19735 0.93484 0.81767 1.48057 0.87640 1.41671 1.09314 1.03967 1.63314 1.19062 0.88040 0.83665 0.86165 1.90562 1.13202 1.86366 1.55328 1.21077 0.89784 0.87129 0.96091 0.89135 1.86240 1.39369 1.16389 1.76550 1.19207 0.92479 0.86360 0.92721 1.20464 0.99831 0.91933 1.05023 1.20909 0.95800 0.96335 0.97131 1.20986 0.93965 0.99160 1.04512 1.20911 0.99407 0.92426 0.97151 1.21367 0.95325 0.99790 1.06197 1.20065 0.93858 1.01350 0.95302 1.20978 1.00246 0.97467 0.91745 1.21096 0.94001 1.00760 0.98177 1.21126 0.95234 0.99693 0.97588 1.21029 0.99748 1.00118 0.92659 1.20978 0.92667 0.99399 0.99252 0.91668 0.77234 0.85180 0.85681 0.86307 0.86082 0.85328 0.85629 0.86165 0.86308 0.85960 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.91 13.05 55.50 0.72 -23.18 16 2 C 0.03 0.70 5.50 -17.47 -0.10 0.61 16 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 8 H 0.11 3.07 7.16 -52.48 -0.38 2.70 16 9 N -0.55 -13.98 5.19 -10.97 -0.06 -14.03 16 10 C 0.45 11.02 7.17 -10.99 -0.08 10.94 16 11 O -0.57 -16.26 16.07 -14.36 -0.23 -16.49 16 12 C 0.12 2.33 2.26 -29.04 -0.07 2.26 16 13 H 0.09 1.58 6.20 -51.93 -0.32 1.26 16 14 O -0.27 -5.37 8.65 -39.33 -0.34 -5.71 16 15 C 0.14 2.29 6.59 -39.22 -0.26 2.03 16 16 C -0.15 -2.22 9.99 -39.43 -0.39 -2.62 16 17 C -0.08 -0.99 10.04 -39.61 -0.40 -1.39 16 18 C -0.17 -1.90 10.04 -39.56 -0.40 -2.30 16 19 C -0.08 -0.99 10.04 -39.60 -0.40 -1.38 16 20 C -0.21 -3.03 8.70 -39.43 -0.34 -3.37 16 21 C -0.10 -1.84 3.93 -104.63 -0.41 -2.26 16 22 C -0.09 -1.49 9.35 -39.58 -0.37 -1.86 16 23 C -0.12 -1.79 10.05 -39.59 -0.40 -2.19 16 24 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 25 C -0.12 -1.64 10.05 -39.58 -0.40 -2.03 16 26 C -0.10 -1.63 9.00 -39.58 -0.36 -1.98 16 27 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.39 9.59 7.62 -40.82 -0.31 9.28 16 29 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.13 1.80 5.26 -52.49 -0.28 1.52 16 34 H 0.13 2.25 7.77 -52.48 -0.41 1.84 16 35 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.12 1.71 8.04 -52.48 -0.42 1.29 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -31.99 333.03 -9.02 -41.01 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -4.21 Total: 13.67 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -4.90 Total: -16.06 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.67 Total: -37.22 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.57 Total: -22.20 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.99 -9.02 -41.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355689708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.767 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds