Wall clock time and date at job start Fri Apr 10 2020 20:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48501 * 109.46778 * 239.99811 * 3 2 1 5 5 H 1.48501 * 109.47193 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47101 * 120.00228 * 3 2 1 7 7 C 1.38807 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00248 * 161.20216 * 7 2 1 9 9 N 1.36934 * 120.00138 * 341.20914 * 7 2 1 10 10 C 1.46505 * 119.99871 * 320.18645 * 9 7 2 11 11 C 1.50706 * 109.46892 * 270.00012 * 10 9 7 12 12 C 1.38235 * 119.99902 * 259.72893 * 11 10 9 13 13 C 1.38414 * 120.06593 * 179.72525 * 12 11 10 14 14 F 1.35094 * 119.96528 * 180.27371 * 13 12 11 15 15 C 1.38487 * 120.07033 * 0.54516 * 13 12 11 16 16 C 1.38285 * 120.00934 * 359.72421 * 15 13 12 17 17 F 1.35107 * 120.03339 * 180.02562 * 16 15 13 18 18 C 1.38591 * 120.00465 * 79.99710 * 11 10 9 19 19 O 1.35997 * 120.03716 * 359.97438 * 18 11 10 20 20 C 1.46503 * 120.00545 * 140.17922 * 9 7 2 21 21 C 1.55242 * 110.57366 * 60.07276 * 20 9 7 22 22 C 1.54890 * 102.58799 * 203.33833 * 21 20 9 23 23 C 1.54268 * 104.31107 * 37.93275 * 22 21 20 24 24 C 1.53878 * 106.60046 * 336.32445 * 23 22 21 25 25 H 0.97003 * 120.00150 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47313 * 29.99872 * 10 9 7 27 27 H 1.08997 * 109.47228 * 150.00287 * 10 9 7 28 28 H 1.07998 * 119.96673 * 359.96842 * 12 11 10 29 29 H 1.08008 * 119.98978 * 179.75388 * 15 13 12 30 30 H 0.96709 * 114.00072 * 89.99663 * 19 18 11 31 31 H 1.08992 * 110.43623 * 182.65655 * 20 9 7 32 32 H 1.09000 * 110.89929 * 85.05216 * 21 20 9 33 33 H 1.09004 * 110.77035 * 321.56813 * 21 20 9 34 34 H 1.08998 * 110.48613 * 279.19390 * 22 21 20 35 35 H 1.08994 * 110.48996 * 156.67646 * 22 21 20 36 36 H 1.09003 * 110.03192 * 95.60928 * 23 22 21 37 37 H 1.08995 * 110.03324 * 216.99042 * 23 22 21 38 38 H 1.08999 * 110.03172 * 119.27939 * 24 23 22 39 39 H 1.09001 * 110.03457 * 240.66639 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0471 -1.2272 -0.3008 9 7 1.3804 -2.3562 0.3830 10 6 0.4485 -2.3421 1.5134 11 6 1.2004 -2.6280 2.7878 12 6 1.1705 -3.8957 3.3384 13 6 1.8652 -4.1613 4.5058 14 9 1.8390 -5.4022 5.0390 15 6 2.5824 -3.1548 5.1307 16 6 2.6099 -1.8843 4.5856 17 9 3.3099 -0.9022 5.1946 18 6 1.9173 -1.6188 3.4109 19 8 1.9433 -0.3701 2.8726 20 6 1.6381 -3.6051 -0.3381 21 6 3.1428 -3.9793 -0.2606 22 6 3.3290 -4.8881 -1.5009 23 6 2.4449 -4.2388 -2.5856 24 6 1.3699 -3.4230 -1.8463 25 1 -0.4850 0.8401 -0.0004 26 1 -0.0241 -1.3624 1.5825 27 1 -0.3159 -3.1045 1.3637 28 1 0.6077 -4.6806 2.8551 29 1 3.1208 -3.3626 6.0437 30 1 1.2354 0.2087 3.1874 31 1 1.0238 -4.4106 0.0641 32 1 3.3604 -4.5275 0.6560 33 1 3.7670 -3.0889 -0.3370 34 1 2.9876 -5.9008 -1.2865 35 1 4.3729 -4.8967 -1.8144 36 1 3.0465 -3.5814 -3.2134 37 1 1.9753 -5.0103 -3.1958 38 1 1.4498 -2.3697 -2.1152 39 1 0.3778 -3.7981 -2.0978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894040713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:32:56 Heat of formation + Delta-G solvation = -93.710884 kcal Electronic energy + Delta-G solvation = -25191.759366 eV Core-core repulsion = 21349.851656 eV Total energy + Delta-G solvation = -3841.907710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.69273 -48.57882 -39.14747 -37.56063 -35.89292 -34.44523 -31.61526 -30.36798 -28.79378 -27.87507 -26.81284 -25.74579 -23.03622 -22.27855 -20.95024 -19.84324 -19.16469 -17.92660 -17.41060 -16.98356 -16.25148 -15.75212 -15.49819 -15.31763 -15.06543 -14.81804 -14.54615 -14.24339 -13.98167 -13.48283 -13.14162 -13.06004 -12.71994 -12.55148 -12.17187 -11.70731 -11.36454 -11.21318 -11.02486 -10.93434 -10.61541 -10.57387 -10.40436 -10.31853 -10.13737 -10.07218 -9.86792 -9.72019 -9.50382 -8.49705 -8.42605 -8.00828 -6.59032 -5.83421 -3.39252 1.33935 1.40345 3.39006 3.43676 3.55161 3.69907 4.19967 4.50169 4.61460 4.86606 5.07232 5.23733 5.29936 5.31245 5.40364 5.47625 5.59653 5.73865 6.06262 6.12934 6.19434 6.21263 6.23709 6.25635 6.33670 6.37118 6.45615 6.50890 6.58433 6.61724 6.80770 6.94386 7.02678 7.08691 7.12285 7.34861 7.46186 7.83504 8.27726 8.50160 9.13464 9.76125 10.32059 11.17454 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.008012 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.879369 B = 3494.084067 C = 5159.678988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.033 3.967 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.232 4.232 8 H 0.056 0.944 9 N -0.560 5.560 10 C 0.179 3.821 11 C -0.051 4.051 12 C -0.153 4.153 13 C 0.107 3.893 14 F -0.142 7.142 15 C -0.203 4.203 16 C 0.090 3.910 17 F -0.135 7.135 18 C 0.089 3.911 19 O -0.450 6.450 20 C 0.173 3.827 21 C -0.136 4.136 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.130 4.130 25 H 0.255 0.745 26 H 0.110 0.890 27 H 0.039 0.961 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.375 0.625 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 -6.527 4.988 8.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.167 4.167 3 Si 0.721 3.279 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.362 4.362 8 H 0.074 0.926 9 N -0.276 5.276 10 C 0.053 3.947 11 C -0.056 4.056 12 C -0.173 4.173 13 C 0.087 3.913 14 F -0.121 7.121 15 C -0.224 4.224 16 C 0.070 3.930 17 F -0.114 7.114 18 C 0.041 3.959 19 O -0.258 6.258 20 C 0.066 3.934 21 C -0.175 4.175 22 C -0.160 4.160 23 C -0.158 4.158 24 C -0.169 4.169 25 H 0.064 0.936 26 H 0.127 0.873 27 H 0.058 0.942 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.231 0.769 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.403 -6.568 4.648 8.167 hybrid contribution 0.410 0.952 0.603 1.199 sum 1.813 -5.616 5.251 7.900 Atomic orbital electron populations 1.69953 1.05580 1.25832 1.51737 1.25018 0.94706 0.98310 0.98664 0.86563 0.79495 0.83199 0.78625 1.21312 1.22073 1.19774 1.18715 0.92920 0.84695 1.39841 0.92647 1.43751 1.51264 1.04618 1.27941 1.20033 0.90159 1.03490 0.81011 1.21534 0.96312 0.90921 0.96873 1.21009 1.02562 0.98162 0.95575 1.17256 1.00102 0.79543 0.94357 1.91463 1.95230 1.39431 1.85992 1.20638 1.06275 0.91813 1.03650 1.17859 0.96975 0.85547 0.92583 1.91470 1.76646 1.60851 1.82413 1.18274 0.98714 0.88297 0.90570 1.85211 1.53597 1.19474 1.67489 1.21339 0.92825 0.88207 0.91057 1.22960 1.00169 0.98749 0.95653 1.22274 0.98684 0.98452 0.96640 1.22072 0.97733 0.98541 0.97488 1.22476 0.96214 1.01686 0.96528 0.93557 0.87268 0.94224 0.84791 0.84405 0.76938 0.93117 0.93326 0.90992 0.92739 0.92973 0.92718 0.93319 0.89633 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.83 11.47 55.49 0.64 -22.19 16 2 C 0.03 0.83 3.97 -17.43 -0.07 0.76 16 3 Si 0.89 20.72 29.05 -169.99 -4.94 15.79 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.23 -5.73 6.85 -15.06 -0.10 -5.83 16 8 H 0.06 1.45 6.72 -52.49 -0.35 1.10 16 9 N -0.56 -12.39 2.43 -164.92 -0.40 -12.79 16 10 C 0.18 3.71 5.09 -5.19 -0.03 3.68 16 11 C -0.05 -0.96 5.47 -104.49 -0.57 -1.53 16 12 C -0.15 -2.51 9.64 -39.52 -0.38 -2.90 16 13 C 0.11 1.69 7.30 -39.42 -0.29 1.40 16 14 F -0.14 -2.17 17.26 2.25 0.04 -2.13 16 15 C -0.20 -3.19 10.00 -39.47 -0.39 -3.58 16 16 C 0.09 1.58 7.31 -39.31 -0.29 1.30 16 17 F -0.14 -2.40 17.11 2.25 0.04 -2.36 16 18 C 0.09 1.69 6.68 -39.20 -0.26 1.43 16 19 O -0.45 -9.05 10.06 -19.73 -0.20 -9.25 16 20 C 0.17 3.39 3.39 -66.08 -0.22 3.16 16 21 C -0.14 -2.49 6.47 -24.55 -0.16 -2.65 16 22 C -0.12 -1.90 6.82 -25.07 -0.17 -2.07 16 23 C -0.12 -1.93 6.80 -25.61 -0.17 -2.11 16 24 C -0.13 -2.48 6.41 -25.61 -0.16 -2.65 16 25 H 0.25 6.44 8.31 -40.82 -0.34 6.10 16 26 H 0.11 2.51 5.29 -51.93 -0.27 2.24 16 27 H 0.04 0.77 7.78 -51.93 -0.40 0.37 16 28 H 0.13 1.99 8.03 -52.49 -0.42 1.57 16 29 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 30 H 0.38 6.26 9.07 45.56 0.41 6.67 16 31 H 0.05 0.94 7.84 -51.93 -0.41 0.54 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.48 6.63 -51.93 -0.34 1.13 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.92 6.92 -51.93 -0.36 1.56 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 324.42 15.07 4.89 4.89 Total: -1.00 -26.14 324.42 -7.46 -33.60 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.25 Total: 6.03 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -3.28 Total: -11.58 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.24 Total: -34.98 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.20 Total: -9.25 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.08 Total: -4.50 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.94 Total: 15.79 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.14 -7.46 -33.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894040713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.109 kcal (2) G-P(sol) polarization free energy of solvation -26.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds