Wall clock time and date at job start Fri Apr 10 2020 20:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48501 * 109.46778 * 239.99811 * 3 2 1 5 5 H 1.48501 * 109.47193 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47101 * 120.00228 * 3 2 1 7 7 C 1.38807 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00248 * 161.20216 * 7 2 1 9 9 N 1.36934 * 120.00138 * 341.20914 * 7 2 1 10 10 C 1.46505 * 119.99871 * 320.18645 * 9 7 2 11 11 C 1.50706 * 109.46892 * 270.00012 * 10 9 7 12 12 C 1.38235 * 119.99902 * 259.72893 * 11 10 9 13 13 C 1.38414 * 120.06593 * 179.72525 * 12 11 10 14 14 F 1.35094 * 119.96528 * 180.27371 * 13 12 11 15 15 C 1.38487 * 120.07033 * 0.54516 * 13 12 11 16 16 C 1.38285 * 120.00934 * 359.72421 * 15 13 12 17 17 F 1.35107 * 120.03339 * 180.02562 * 16 15 13 18 18 C 1.38591 * 120.00465 * 79.99710 * 11 10 9 19 19 O 1.35997 * 120.03716 * 359.97438 * 18 11 10 20 20 C 1.46503 * 120.00545 * 140.17922 * 9 7 2 21 21 C 1.55242 * 110.57366 * 60.07276 * 20 9 7 22 22 C 1.54890 * 102.58799 * 203.33833 * 21 20 9 23 23 C 1.54268 * 104.31107 * 37.93275 * 22 21 20 24 24 C 1.53878 * 106.60046 * 336.32445 * 23 22 21 25 25 H 0.97003 * 120.00150 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47313 * 29.99872 * 10 9 7 27 27 H 1.08997 * 109.47228 * 150.00287 * 10 9 7 28 28 H 1.07998 * 119.96673 * 359.96842 * 12 11 10 29 29 H 1.08008 * 119.98978 * 179.75388 * 15 13 12 30 30 H 0.96709 * 114.00072 * 89.99663 * 19 18 11 31 31 H 1.08992 * 110.43623 * 182.65655 * 20 9 7 32 32 H 1.09000 * 110.89929 * 85.05216 * 21 20 9 33 33 H 1.09004 * 110.77035 * 321.56813 * 21 20 9 34 34 H 1.08998 * 110.48613 * 279.19390 * 22 21 20 35 35 H 1.08994 * 110.48996 * 156.67646 * 22 21 20 36 36 H 1.09003 * 110.03192 * 95.60928 * 23 22 21 37 37 H 1.08995 * 110.03324 * 216.99042 * 23 22 21 38 38 H 1.08999 * 110.03172 * 119.27939 * 24 23 22 39 39 H 1.09001 * 110.03457 * 240.66639 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0471 -1.2272 -0.3008 9 7 1.3804 -2.3562 0.3830 10 6 0.4485 -2.3421 1.5134 11 6 1.2004 -2.6280 2.7878 12 6 1.1705 -3.8957 3.3384 13 6 1.8652 -4.1613 4.5058 14 9 1.8390 -5.4022 5.0390 15 6 2.5824 -3.1548 5.1307 16 6 2.6099 -1.8843 4.5856 17 9 3.3099 -0.9022 5.1946 18 6 1.9173 -1.6188 3.4109 19 8 1.9433 -0.3701 2.8726 20 6 1.6381 -3.6051 -0.3381 21 6 3.1428 -3.9793 -0.2606 22 6 3.3290 -4.8881 -1.5009 23 6 2.4449 -4.2388 -2.5856 24 6 1.3699 -3.4230 -1.8463 25 1 -0.4850 0.8401 -0.0004 26 1 -0.0241 -1.3624 1.5825 27 1 -0.3159 -3.1045 1.3637 28 1 0.6077 -4.6806 2.8551 29 1 3.1208 -3.3626 6.0437 30 1 1.2354 0.2087 3.1874 31 1 1.0238 -4.4106 0.0641 32 1 3.3604 -4.5275 0.6560 33 1 3.7670 -3.0889 -0.3370 34 1 2.9876 -5.9008 -1.2865 35 1 4.3729 -4.8967 -1.8144 36 1 3.0465 -3.5814 -3.2134 37 1 1.9753 -5.0103 -3.1958 38 1 1.4498 -2.3697 -2.1152 39 1 0.3778 -3.7981 -2.0978 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894040713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:32:55 Heat of formation + Delta-G solvation = -106.827406 kcal Electronic energy + Delta-G solvation = -25192.328141 eV Core-core repulsion = 21349.851656 eV Total energy + Delta-G solvation = -3842.476485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.97123 -49.93618 -40.59519 -39.04667 -37.35418 -36.05335 -33.32663 -31.89696 -30.18514 -29.31173 -28.28113 -27.46892 -24.63025 -23.66443 -22.43556 -21.25510 -20.71333 -19.38757 -18.82643 -18.36890 -17.94370 -17.13829 -16.99027 -16.71094 -16.44223 -16.35015 -15.97078 -15.88185 -15.36084 -15.05014 -14.70459 -14.49854 -14.21462 -14.01202 -13.60841 -13.12907 -13.03871 -12.81704 -12.66432 -12.58209 -12.28506 -12.14649 -11.87723 -11.79193 -11.73548 -11.70937 -11.36099 -11.17536 -11.06088 -10.33881 -9.84126 -9.39484 -8.38465 -7.71119 -5.30203 -0.02523 0.05676 1.48464 1.51891 1.63690 2.32369 2.62807 2.85741 3.24786 3.42527 3.50085 3.74509 3.76378 3.94727 4.03471 4.08449 4.22603 4.35065 4.67395 4.70859 4.74788 4.78676 4.87318 4.93646 4.95357 4.97621 5.02567 5.07714 5.22849 5.26241 5.35925 5.46367 5.58514 5.64916 5.69742 5.74996 5.80783 5.90171 6.62459 6.87618 7.31868 7.97473 8.48994 9.25941 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.008012 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.879369 B = 3494.084067 C = 5159.678988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.008 3.992 3 Si 0.929 3.071 4 H -0.295 1.295 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.225 4.225 8 H 0.033 0.967 9 N -0.573 5.573 10 C 0.184 3.816 11 C -0.061 4.061 12 C -0.142 4.142 13 C 0.114 3.886 14 F -0.133 7.133 15 C -0.185 4.185 16 C 0.081 3.919 17 F -0.138 7.138 18 C 0.075 3.925 19 O -0.472 6.472 20 C 0.165 3.835 21 C -0.130 4.130 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.128 4.128 25 H 0.250 0.750 26 H 0.085 0.915 27 H 0.049 0.951 28 H 0.154 0.846 29 H 0.166 0.834 30 H 0.386 0.614 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 -8.991 5.891 10.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.190 4.190 3 Si 0.760 3.240 4 H -0.222 1.222 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.051 0.949 9 N -0.290 5.290 10 C 0.058 3.942 11 C -0.066 4.066 12 C -0.162 4.162 13 C 0.094 3.906 14 F -0.112 7.112 15 C -0.205 4.205 16 C 0.061 3.939 17 F -0.117 7.117 18 C 0.028 3.972 19 O -0.282 6.282 20 C 0.058 3.942 21 C -0.170 4.170 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.167 4.167 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.171 0.829 29 H 0.184 0.816 30 H 0.242 0.758 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.866 -9.048 5.575 10.790 hybrid contribution 0.274 1.629 0.433 1.707 sum 2.139 -7.419 6.008 9.783 Atomic orbital electron populations 1.70016 1.06020 1.25554 1.53800 1.25233 0.94968 0.99394 0.99426 0.85989 0.78463 0.81892 0.77650 1.22247 1.22187 1.20491 1.18526 0.91891 0.85863 1.39206 0.94909 1.43849 1.51096 1.04718 1.29321 1.19831 0.90185 1.02460 0.81744 1.21259 0.96607 0.91905 0.96785 1.21126 1.02049 0.97532 0.95518 1.17168 0.99624 0.79849 0.93938 1.91496 1.95110 1.38821 1.85763 1.20895 1.05013 0.90614 1.03965 1.17883 0.97275 0.86279 0.92467 1.91462 1.76727 1.61170 1.82353 1.18504 0.99381 0.87973 0.91346 1.85143 1.54359 1.20399 1.68297 1.21539 0.93965 0.87611 0.91044 1.22835 0.98488 0.98189 0.97462 1.22243 0.99482 0.98716 0.94600 1.22031 0.96896 0.98709 0.97632 1.22392 0.97682 0.99695 0.96919 0.94083 0.89744 0.93296 0.82865 0.81605 0.75807 0.91584 0.92834 0.94060 0.90393 0.91645 0.93146 0.90752 0.93768 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.09 11.47 21.65 0.25 -47.84 16 2 C 0.01 0.39 3.97 84.86 0.34 0.73 16 3 Si 0.93 43.92 29.05 68.60 1.99 45.92 16 4 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 7 C -0.22 -11.40 6.85 84.03 0.58 -10.82 16 8 H 0.03 1.81 6.72 -2.91 -0.02 1.79 16 9 N -0.57 -25.58 2.43 -675.69 -1.64 -27.22 16 10 C 0.18 7.60 5.09 85.63 0.44 8.03 16 11 C -0.06 -2.22 5.47 -19.78 -0.11 -2.33 16 12 C -0.14 -4.30 9.64 22.31 0.22 -4.09 16 13 C 0.11 3.21 7.30 22.37 0.16 3.37 16 14 F -0.13 -3.53 17.26 44.97 0.78 -2.75 16 15 C -0.18 -5.21 10.00 22.34 0.22 -4.99 16 16 C 0.08 2.70 7.31 22.45 0.16 2.87 16 17 F -0.14 -4.75 17.11 44.97 0.77 -3.98 16 18 C 0.08 2.81 6.68 22.52 0.15 2.96 16 19 O -0.47 -19.38 10.06 -93.52 -0.94 -20.32 16 20 C 0.16 6.33 3.39 46.19 0.16 6.48 16 21 C -0.13 -4.61 6.47 32.01 0.21 -4.40 16 22 C -0.11 -3.17 6.82 31.67 0.22 -2.95 16 23 C -0.11 -3.46 6.80 31.32 0.21 -3.25 16 24 C -0.13 -4.83 6.41 31.32 0.20 -4.63 16 25 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 26 H 0.08 3.98 5.29 -2.39 -0.01 3.96 16 27 H 0.05 1.87 7.78 -2.39 -0.02 1.85 16 28 H 0.15 4.01 8.03 -2.91 -0.02 3.99 16 29 H 0.17 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.39 13.35 9.07 -74.05 -0.67 12.68 16 31 H 0.07 2.32 7.84 -2.39 -0.02 2.30 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 1.70 6.63 -2.39 -0.02 1.69 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.04 2.03 6.92 -2.39 -0.02 2.01 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -56.59 324.42 4.77 -51.83 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.41 Total: 17.37 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 3.15 Total: -13.01 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -1.40 Total: -75.06 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.94 Total: -20.32 kcal Atomic # 9 Polarization: -8.28 SS G_CDS: 1.55 Total: -6.73 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.99 Total: 45.92 kcal Total: -56.59 4.77 -51.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894040713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.000 kcal (2) G-P(sol) polarization free energy of solvation -56.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds