Wall clock time and date at job start Fri Apr 10 2020 20:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99678 * 2 1 4 4 H 1.48493 * 109.47041 * 269.99958 * 3 2 1 5 5 H 1.48500 * 109.47093 * 30.00250 * 3 2 1 6 6 H 1.48501 * 109.46557 * 150.00206 * 3 2 1 7 7 C 1.37876 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99930 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.46941 * 299.99805 * 9 7 2 11 11 O 1.42899 * 109.46831 * 59.99944 * 9 7 2 12 12 C 1.53001 * 109.46899 * 179.97438 * 9 7 2 13 13 N 1.46902 * 109.46761 * 174.40438 * 12 9 7 14 14 C 1.47624 * 111.00163 * 64.91699 * 13 12 9 15 15 C 1.50821 * 108.04342 * 150.32311 * 14 13 12 16 16 C 1.53818 * 111.61892 * 95.05879 * 15 14 13 17 17 C 1.54172 * 111.97185 * 319.04728 * 16 15 14 18 18 O 1.42895 * 108.85756 * 79.19027 * 17 16 15 19 19 C 1.53003 * 108.85562 * 197.68022 * 17 16 15 20 20 F 1.39902 * 109.47002 * 59.99384 * 19 17 16 21 21 F 1.39897 * 109.47389 * 179.97438 * 19 17 16 22 22 F 1.39897 * 109.46633 * 300.00005 * 19 17 16 23 23 C 1.50756 * 112.61165 * 318.48582 * 17 16 15 24 24 C 1.39782 * 110.99724 * 296.01087 * 13 12 9 25 25 H 0.96993 * 120.00365 * 359.97438 * 1 2 3 26 26 H 0.96694 * 114.00382 * 60.00056 * 11 9 7 27 27 H 1.09001 * 109.47110 * 54.40237 * 12 9 7 28 28 H 1.09003 * 109.46974 * 294.39869 * 12 9 7 29 29 H 1.09002 * 109.74350 * 269.95730 * 14 13 12 30 30 H 1.09002 * 109.75318 * 30.68609 * 14 13 12 31 31 H 1.08993 * 109.04948 * 215.61037 * 15 14 13 32 32 H 1.09001 * 109.04675 * 334.50914 * 15 14 13 33 33 H 1.09001 * 108.98288 * 79.68853 * 16 15 14 34 34 H 1.09001 * 108.98154 * 198.40183 * 16 15 14 35 35 H 0.96698 * 113.99877 * 59.99460 * 18 17 16 36 36 H 1.08999 * 109.54364 * 333.14040 * 23 17 16 37 37 H 1.09005 * 109.54338 * 212.88165 * 23 17 16 38 38 H 1.09004 * 109.02125 * 309.72786 * 24 13 12 39 39 H 1.08995 * 109.01994 * 68.55261 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6241 -2.5575 0.8880 11 8 0.4300 -2.5741 -1.1688 12 6 2.2453 -3.6621 -0.0027 13 7 1.5158 -4.9301 0.1312 14 6 0.6553 -5.1721 -1.0437 15 6 0.5329 -6.6632 -1.2339 16 6 -0.7349 -7.2180 -0.5623 17 6 -0.9877 -6.5725 0.8148 18 8 -1.5781 -5.2858 0.6203 19 6 -1.9641 -7.4501 1.6005 20 9 -1.4133 -8.7250 1.7691 21 9 -2.2024 -6.8761 2.8538 22 9 -3.1691 -7.5521 0.8970 23 6 0.2767 -6.4095 1.6195 24 6 0.8591 -5.0025 1.3630 25 1 -0.4850 0.8400 0.0004 26 1 0.9223 -2.5281 -1.9998 27 1 2.9361 -3.5502 0.8330 28 1 2.8041 -3.6615 -0.9387 29 1 -0.3309 -4.7404 -0.8729 30 1 1.1061 -4.7237 -1.9291 31 1 0.4960 -6.8839 -2.3006 32 1 1.4069 -7.1500 -0.8011 33 1 -1.5917 -7.0240 -1.2075 34 1 -0.6260 -8.2950 -0.4345 35 1 -2.4225 -5.3076 0.1498 36 1 1.0016 -7.1651 1.3166 37 1 0.0512 -6.5232 2.6799 38 1 1.5655 -4.7601 2.1570 39 1 0.0481 -4.2744 1.3764 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930461909.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:30:45 Heat of formation + Delta-G solvation = -243.871455 kcal Electronic energy + Delta-G solvation = -26722.249004 eV Core-core repulsion = 22443.060619 eV Total energy + Delta-G solvation = -4279.188385 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.134 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.22082 -47.73195 -47.64762 -39.88305 -37.12930 -34.84347 -33.08693 -32.15035 -31.74770 -28.94401 -26.99375 -25.71850 -24.16114 -23.19073 -21.34788 -20.08300 -19.57320 -18.69728 -18.41453 -18.28307 -17.04673 -16.18026 -15.51365 -14.89761 -14.73562 -14.55488 -14.48288 -14.42285 -14.21035 -14.11115 -13.92887 -13.85344 -13.64114 -13.37898 -13.22864 -13.02005 -12.59089 -12.22577 -11.92289 -11.66203 -11.17371 -11.02015 -10.92658 -10.85729 -10.69279 -10.46627 -10.41162 -10.25479 -10.01401 -9.77800 -9.25090 -8.55992 -8.40014 -7.07130 -5.97907 -4.17126 2.59605 3.27573 3.35029 3.37625 3.60023 3.70216 3.90994 4.29956 4.38840 4.50450 4.68648 4.79730 5.18002 5.27195 5.28733 5.46183 5.51015 5.65939 5.78650 5.96377 5.99749 6.12617 6.21284 6.30714 6.36207 6.49283 6.55048 6.75738 6.91338 6.99106 7.40037 7.67298 7.75211 7.90176 8.12313 8.24090 8.86225 9.38692 9.59642 11.04696 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.027367 B = 0.004404 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.871864 B = 6355.819314 C = 6653.894305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.886 3.114 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.572 4.572 8 H 0.055 0.945 9 C 0.201 3.799 10 H 0.059 0.941 11 O -0.560 6.560 12 C 0.034 3.966 13 N -0.555 5.555 14 C 0.061 3.939 15 C -0.112 4.112 16 C -0.142 4.142 17 C 0.109 3.891 18 O -0.509 6.509 19 C 0.416 3.584 20 F -0.182 7.182 21 F -0.176 7.176 22 F -0.187 7.187 23 C -0.112 4.112 24 C 0.080 3.920 25 H 0.259 0.741 26 H 0.340 0.660 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.377 0.623 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.525 -16.054 -0.049 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.611 4.611 8 H 0.073 0.927 9 C 0.142 3.858 10 H 0.076 0.924 11 O -0.362 6.362 12 C -0.093 4.093 13 N -0.278 5.278 14 C -0.066 4.066 15 C -0.150 4.150 16 C -0.180 4.180 17 C 0.066 3.934 18 O -0.315 6.315 19 C 0.361 3.639 20 F -0.164 7.164 21 F -0.157 7.157 22 F -0.169 7.169 23 C -0.150 4.150 24 C -0.050 4.050 25 H 0.069 0.931 26 H 0.183 0.817 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.226 0.774 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.368 -16.185 0.775 16.376 hybrid contribution -0.416 1.223 -0.392 1.350 sum -2.784 -14.962 0.383 15.223 Atomic orbital electron populations 1.70079 1.05897 1.26269 1.47183 1.25036 0.94650 0.99043 0.93885 0.86718 0.80025 0.83739 0.78142 1.20610 1.21210 1.19863 1.21662 0.93127 0.91722 1.54580 0.92726 1.19943 0.88787 0.90808 0.86262 0.92378 1.86606 1.38360 1.96143 1.15082 1.22980 0.97114 0.88066 1.01178 1.59268 1.31376 1.35253 1.01924 1.21900 0.98818 0.93088 0.92767 1.21449 0.95959 0.98247 0.99372 1.22618 1.01257 1.00389 0.93722 1.22303 0.92233 0.83637 0.95218 1.87011 1.40240 1.24458 1.79780 1.22037 0.81912 0.80350 0.79570 1.93156 1.85296 1.42243 1.95685 1.93188 1.94820 1.84315 1.43411 1.93150 1.48875 1.96245 1.78611 1.21689 0.93230 1.01459 0.98615 1.20602 0.98032 0.94176 0.92206 0.93123 0.81693 0.91637 0.92051 0.90025 0.91583 0.91835 0.90868 0.90673 0.90716 0.77352 0.89062 0.90452 0.91639 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.22 12.84 55.43 0.71 -24.51 16 2 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.57 -15.42 8.76 -34.44 -0.30 -15.72 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.20 4.86 2.61 -27.88 -0.07 4.79 16 10 H 0.06 1.60 6.41 -51.93 -0.33 1.27 16 11 O -0.56 -13.45 9.89 -35.23 -0.35 -13.80 16 12 C 0.03 0.67 4.91 -3.82 -0.02 0.65 16 13 N -0.56 -9.45 4.11 -240.00 -0.99 -10.44 16 14 C 0.06 0.97 3.73 -4.52 -0.02 0.95 16 15 C -0.11 -1.38 5.41 -27.40 -0.15 -1.53 16 16 C -0.14 -1.58 4.73 -25.69 -0.12 -1.70 16 17 C 0.11 1.39 0.44 -91.13 -0.04 1.35 16 18 O -0.51 -7.44 8.32 -35.23 -0.29 -7.73 16 19 C 0.42 5.20 2.28 37.16 0.08 5.29 16 20 F -0.18 -2.22 16.26 2.25 0.04 -2.18 16 21 F -0.18 -2.46 16.25 2.25 0.04 -2.43 16 22 F -0.19 -2.27 16.52 2.25 0.04 -2.24 16 23 C -0.11 -1.52 4.84 -27.11 -0.13 -1.65 16 24 C 0.08 1.34 4.42 -6.74 -0.03 1.31 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.34 7.41 8.67 45.56 0.40 7.81 16 27 H 0.07 1.30 7.96 -51.93 -0.41 0.89 16 28 H 0.06 1.18 7.95 -51.93 -0.41 0.77 16 29 H 0.08 1.45 4.61 -51.93 -0.24 1.21 16 30 H 0.07 1.08 6.90 -51.93 -0.36 0.72 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.92 7.26 -51.93 -0.38 0.54 16 33 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 34 H 0.07 0.75 7.31 -51.93 -0.38 0.37 16 35 H 0.38 4.36 8.49 45.56 0.39 4.74 16 36 H 0.09 1.14 7.11 -51.93 -0.37 0.77 16 37 H 0.08 1.01 6.97 -51.93 -0.36 0.64 16 38 H 0.07 1.10 7.88 -51.93 -0.41 0.69 16 39 H 0.06 1.20 4.79 -51.93 -0.25 0.95 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -29.85 307.11 -5.59 -35.44 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -3.50 Total: 11.37 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.89 Total: -4.15 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: -0.28 Total: -34.95 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.64 Total: -21.54 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 0.11 Total: -6.84 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.85 -5.59 -35.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930461909.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.432 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds