Wall clock time and date at job start Fri Apr 10 2020 20:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86796 * 120.00512 * 2 1 4 4 H 1.48497 * 109.47417 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46985 * 300.00181 * 3 2 1 6 6 H 1.48497 * 109.47058 * 59.99644 * 3 2 1 7 7 C 1.38658 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99823 * 180.02562 * 7 2 1 9 9 O 1.34833 * 120.00105 * 359.97438 * 7 2 1 10 10 C 1.35747 * 116.99844 * 185.05729 * 9 7 2 11 11 C 1.38879 * 120.07303 * 354.47072 * 10 9 7 12 12 C 1.38098 * 119.93084 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.06879 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.92854 * 179.97438 * 13 12 11 15 15 N 1.46905 * 109.46830 * 90.00286 * 14 13 12 16 16 C 1.48127 * 110.99753 * 170.00197 * 15 14 13 17 17 C 1.50867 * 105.65538 * 213.23100 * 16 15 14 18 18 C 1.38248 * 132.91633 * 197.36157 * 17 16 15 19 19 N 1.32465 * 118.85683 * 179.97438 * 18 17 16 20 20 C 1.31817 * 120.82619 * 0.04955 * 19 18 17 21 21 N 1.31882 * 121.88688 * 359.92757 * 20 19 18 22 22 C 1.32122 * 120.62324 * 0.05192 * 21 20 19 23 23 C 1.48104 * 111.00374 * 54.92395 * 15 14 13 24 24 C 1.38300 * 120.13717 * 0.25212 * 13 12 11 25 25 C 1.38098 * 120.07284 * 359.45538 * 24 13 12 26 26 H 0.97001 * 119.99536 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.03052 * 359.97438 * 11 10 9 28 28 H 1.08005 * 119.96201 * 180.02562 * 12 11 10 29 29 H 1.08991 * 109.47219 * 330.00137 * 14 13 12 30 30 H 1.08996 * 109.46786 * 209.99532 * 14 13 12 31 31 H 1.09001 * 110.21117 * 94.18305 * 16 15 14 32 32 H 1.09002 * 110.27585 * 332.30930 * 16 15 14 33 33 H 1.08000 * 120.57106 * 359.95259 * 18 17 16 34 34 H 1.07998 * 119.05562 * 179.97438 * 20 19 18 35 35 H 1.09005 * 110.19638 * 27.73914 * 23 15 14 36 36 H 1.08992 * 110.20348 * 265.85902 * 23 15 14 37 37 H 1.08006 * 119.95922 * 179.70024 * 24 13 12 38 38 H 1.07998 * 120.03692 * 180.26918 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3462 -0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3964 1.2124 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0698 -3.5047 0.1055 11 6 3.4571 -3.4397 0.0922 12 6 4.2022 -4.5974 0.1998 13 6 3.5684 -5.8207 0.3202 14 6 4.3846 -7.0822 0.4368 15 7 4.6568 -7.3600 1.8534 16 6 5.2465 -8.7078 2.0262 17 6 4.7346 -9.2090 3.3540 18 6 5.1458 -10.2225 4.1995 19 7 4.4780 -10.4263 5.3252 20 6 3.4381 -9.6792 5.6384 21 7 3.0195 -8.7042 4.8552 22 6 3.6372 -8.4432 3.7168 23 6 3.3996 -7.4178 2.6342 24 6 2.1871 -5.8893 0.3280 25 6 1.4363 -4.7346 0.2269 26 1 -0.4849 0.8401 -0.0004 27 1 3.9525 -2.4847 -0.0030 28 1 5.2810 -4.5474 0.1899 29 1 5.3268 -6.9558 -0.0963 30 1 3.8306 -7.9147 0.0033 31 1 6.3345 -8.6437 2.0419 32 1 4.9202 -9.3687 1.2231 33 1 5.9965 -10.8378 3.9465 34 1 2.9142 -9.8706 6.5632 35 1 2.5736 -7.7299 1.9949 36 1 3.1867 -6.4450 3.0773 37 1 1.6951 -6.8466 0.4173 38 1 0.3577 -4.7885 0.2374 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137114607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:31:52 Heat of formation + Delta-G solvation = 71.023471 kcal Electronic energy + Delta-G solvation = -22371.657380 eV Core-core repulsion = 18987.582275 eV Total energy + Delta-G solvation = -3384.075106 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.70000 -39.33432 -38.29905 -36.42861 -33.97279 -32.82548 -32.14453 -30.28888 -29.54330 -28.69527 -26.50091 -25.30189 -23.64465 -23.13439 -22.13696 -21.60034 -20.37572 -18.07579 -17.94769 -17.17523 -17.03405 -16.04538 -15.67349 -14.89715 -14.65741 -14.58624 -14.42485 -14.05229 -13.78496 -13.68809 -13.55791 -13.48168 -12.87190 -12.74194 -12.52150 -12.41168 -11.84693 -11.59924 -11.31194 -11.16258 -10.87437 -10.83953 -10.68181 -10.59607 -10.44459 -9.78834 -9.42646 -9.36941 -8.88148 -8.58160 -8.23337 -7.24978 -6.49063 -4.07742 0.61175 0.80101 2.14153 2.20413 3.10042 3.12224 3.17745 3.38691 3.49112 3.77799 3.92758 3.94090 4.13687 4.39124 4.54952 4.63861 5.00452 5.04262 5.07653 5.16760 5.18658 5.25948 5.32038 5.40233 5.58848 5.62497 5.66985 5.78032 5.81782 6.11156 6.14984 6.34680 6.46808 6.62891 6.69611 6.75968 6.85779 7.01827 7.17840 7.33406 7.39807 7.76034 7.82709 7.96062 8.96712 9.65759 10.68824 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.026851 B = 0.002891 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.551787 B = 9681.841013 C = 9988.002593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.176 6.176 10 C 0.158 3.842 11 C -0.236 4.236 12 C -0.046 4.046 13 C -0.194 4.194 14 C 0.104 3.896 15 N -0.494 5.494 16 C 0.081 3.919 17 C -0.213 4.213 18 C 0.163 3.837 19 N -0.521 5.521 20 C 0.295 3.705 21 N -0.506 5.506 22 C 0.172 3.828 23 C 0.085 3.915 24 C -0.068 4.068 25 C -0.192 4.192 26 H 0.270 0.730 27 H 0.127 0.873 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.168 0.832 34 H 0.200 0.800 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.881 -17.462 4.025 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.079 6.079 10 C 0.104 3.896 11 C -0.255 4.255 12 C -0.065 4.065 13 C -0.195 4.195 14 C -0.022 4.022 15 N -0.218 5.218 16 C -0.048 4.048 17 C -0.218 4.218 18 C -0.002 4.002 19 N -0.234 5.234 20 C 0.007 3.993 21 N -0.220 5.220 22 C 0.024 3.976 23 C -0.043 4.043 24 C -0.087 4.087 25 C -0.212 4.212 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.185 0.815 34 H 0.216 0.784 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.323 -16.984 5.028 20.016 hybrid contribution 0.340 0.357 -0.947 1.067 sum 9.663 -16.627 4.081 19.659 Atomic orbital electron populations 1.70049 1.05993 1.27659 1.45865 1.25309 0.95851 0.98900 0.96460 0.85638 0.79171 0.80295 0.78287 1.19038 1.20127 1.20092 1.21395 0.91867 0.80747 1.52780 0.88913 1.83977 1.34476 1.11536 1.77905 1.19406 0.90328 0.88018 0.91870 1.21172 0.93764 0.98995 1.11563 1.20567 0.98397 0.91446 0.96047 1.18992 0.93035 0.93701 1.13774 1.21094 0.99401 0.95229 0.86491 1.65595 1.20502 1.24677 1.10991 1.21551 1.01424 0.89982 0.91809 1.22309 1.00184 0.99329 0.99959 1.22544 0.96902 0.92951 0.87787 1.68532 1.08671 1.28403 1.17830 1.25014 0.90121 0.86176 0.97967 1.67644 1.31850 1.18303 1.04215 1.22316 0.89857 0.93955 0.91520 1.21671 0.93244 0.98020 0.91326 1.20489 0.92865 0.96586 0.98736 1.20166 0.99545 0.90280 1.11162 0.92003 0.85509 0.87313 0.89654 0.94093 0.88386 0.91453 0.81525 0.78386 0.90003 0.87046 0.87535 0.86519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.02 13.67 55.48 0.76 -24.26 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.30 29.55 -169.99 -5.02 15.28 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.39 -10.79 9.49 30.89 0.29 -10.49 16 8 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 9 O -0.18 -4.94 9.76 0.05 0.00 -4.94 16 10 C 0.16 3.71 6.65 -39.10 -0.26 3.45 16 11 C -0.24 -4.94 9.17 -39.40 -0.36 -5.30 16 12 C -0.05 -0.79 9.69 -39.61 -0.38 -1.18 16 13 C -0.19 -3.02 4.79 -104.57 -0.50 -3.52 16 14 C 0.10 1.24 5.08 -4.97 -0.03 1.21 16 15 N -0.49 -5.88 5.58 -236.55 -1.32 -7.20 16 16 C 0.08 0.74 6.61 -4.22 -0.03 0.71 16 17 C -0.21 -2.24 6.32 -104.39 -0.66 -2.90 16 18 C 0.16 1.54 11.31 -17.27 -0.20 1.35 16 19 N -0.52 -5.68 10.44 -14.62 -0.15 -5.83 16 20 C 0.29 3.21 12.28 -92.06 -1.13 2.08 16 21 N -0.51 -6.64 10.44 -10.71 -0.11 -6.75 16 22 C 0.17 2.19 7.50 -82.17 -0.62 1.57 16 23 C 0.09 1.09 5.25 -4.16 -0.02 1.07 16 24 C -0.07 -1.12 8.40 -39.61 -0.33 -1.45 16 25 C -0.19 -3.89 9.99 -39.39 -0.39 -4.28 16 26 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.13 2.69 5.64 -52.49 -0.30 2.40 16 28 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 29 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 30 H 0.04 0.43 7.76 -51.93 -0.40 0.03 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.52 7.61 -51.93 -0.40 0.13 16 33 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.20 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.08 1.01 6.12 -51.93 -0.32 0.69 16 36 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.11 1.46 7.10 -52.48 -0.37 1.09 16 38 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 LS Contribution 323.13 15.07 4.87 4.87 Total: -1.00 -31.62 323.13 -9.84 -41.46 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -4.15 Total: 4.08 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -4.71 Total: -16.71 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.83 Total: -44.03 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: 0.00 Total: -4.94 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.62 -9.84 -41.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137114607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.482 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds