Wall clock time and date at job start Fri Apr 10 2020 20:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31986 * 120.05101 * 2 1 4 4 C 1.32221 * 120.07531 * 180.30264 * 3 2 1 5 5 C 1.38258 * 120.16399 * 359.65800 * 4 3 2 6 6 N 1.32180 * 120.09579 * 0.04927 * 5 4 3 7 7 C 1.32640 * 119.92561 * 359.97438 * 6 5 4 8 8 N 1.39401 * 120.08134 * 180.02562 * 7 6 5 9 9 C 1.34771 * 120.00530 * 359.97438 * 8 7 6 10 10 O 1.21283 * 120.00003 * 359.97438 * 9 8 7 11 11 C 1.50701 * 120.00366 * 179.97438 * 9 8 7 12 12 H 1.08997 * 109.47097 * 299.99762 * 11 9 8 13 13 C 1.50702 * 109.46685 * 59.99962 * 11 9 8 14 14 H 1.08003 * 120.00414 * 33.93236 * 13 11 9 15 15 C 1.37879 * 119.99556 * 213.92433 * 13 11 9 16 16 N 1.31513 * 120.00024 * 6.39654 * 15 13 11 17 17 Si 1.86803 * 119.99915 * 186.39088 * 15 13 11 18 18 H 1.48492 * 109.47048 * 90.00305 * 17 15 13 19 19 H 1.48496 * 109.46937 * 210.00441 * 17 15 13 20 20 H 1.48503 * 109.47183 * 330.00462 * 17 15 13 21 21 C 1.50707 * 109.47154 * 179.97438 * 11 9 8 22 22 C 1.38229 * 119.99815 * 293.84842 * 21 11 9 23 23 C 1.38239 * 119.99872 * 179.78710 * 22 21 11 24 24 C 1.38247 * 119.99603 * 0.44309 * 23 22 21 25 25 C 1.38234 * 119.99853 * 359.80669 * 24 23 22 26 26 C 1.38232 * 120.00322 * 359.97438 * 25 24 23 27 27 H 1.09007 * 109.46987 * 270.29325 * 1 2 3 28 28 H 1.09003 * 109.47366 * 30.28672 * 1 2 3 29 29 H 1.09000 * 109.47599 * 150.28839 * 1 2 3 30 30 H 1.07994 * 119.91665 * 179.68539 * 4 3 2 31 31 H 1.08005 * 119.95259 * 180.02562 * 5 4 3 32 32 H 0.97002 * 120.00022 * 179.97438 * 8 7 6 33 33 H 0.97005 * 119.99921 * 180.02562 * 16 15 13 34 34 H 1.07996 * 120.00582 * 0.02562 * 22 21 11 35 35 H 1.07991 * 120.00584 * 180.27490 * 23 22 21 36 36 H 1.07996 * 119.99532 * 179.83330 * 24 23 22 37 37 H 1.08005 * 119.99820 * 179.97438 * 25 24 23 38 38 H 1.07997 * 120.00096 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1679 1.1424 0.0000 4 6 3.4901 1.1430 -0.0060 5 6 4.1853 -0.0521 -0.0052 6 7 3.5301 -1.2000 0.0006 7 6 2.2038 -1.2049 0.0062 8 7 1.5095 -2.4137 0.0129 9 6 2.1859 -3.5794 0.0131 10 8 3.3987 -3.5768 0.0071 11 6 1.4353 -4.8861 0.0210 12 1 0.8133 -4.9425 0.9142 13 6 0.5630 -4.9716 -1.2050 14 1 0.8923 -4.5301 -2.1340 15 6 -0.6555 -5.6136 -1.1405 16 7 -1.1134 -6.0406 0.0160 17 14 -1.6560 -5.8768 -2.6959 18 1 -1.2837 -7.1766 -3.3099 19 1 -3.1022 -5.8847 -2.3588 20 1 -1.3774 -4.7782 -3.6555 21 6 2.4172 -6.0295 0.0190 22 6 3.2287 -6.2416 -1.0797 23 6 4.1325 -7.2877 -1.0797 24 6 4.2181 -8.1271 0.0154 25 6 3.4028 -7.9180 1.1119 26 6 2.5023 -6.8692 1.1138 27 1 -0.3633 0.0053 1.0277 28 1 -0.3634 0.8874 -0.5183 29 1 -0.3634 -0.8925 -0.5093 30 1 4.0283 2.0793 -0.0112 31 1 5.2654 -0.0476 -0.0098 32 1 0.5395 -2.4159 0.0173 33 1 -1.9706 -6.4927 0.0613 34 1 3.1595 -5.5879 -1.9365 35 1 4.7697 -7.4508 -1.9362 36 1 4.9222 -8.9459 0.0142 37 1 3.4694 -8.5740 1.9673 38 1 1.8651 -6.7061 1.9703 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001628038607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:31:07 Heat of formation + Delta-G solvation = 43.332567 kcal Electronic energy + Delta-G solvation = -23350.349508 eV Core-core repulsion = 19965.073635 eV Total energy + Delta-G solvation = -3385.275873 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07950 -39.17341 -37.82461 -34.76986 -34.24804 -33.73247 -31.30225 -30.91244 -30.00100 -27.99739 -27.36419 -24.63152 -23.58949 -22.62457 -21.66914 -21.01644 -19.65175 -18.00044 -17.12881 -16.69899 -15.94829 -15.78766 -15.61485 -15.21447 -14.55583 -14.41568 -14.13702 -13.97827 -13.55169 -13.11430 -12.73390 -12.68994 -12.52680 -12.40388 -12.11702 -11.74569 -11.72118 -11.26822 -11.12845 -11.10707 -11.00576 -10.46777 -10.35540 -10.12130 -10.08050 -9.54425 -9.23543 -8.83346 -8.38919 -8.00842 -7.96997 -7.70076 -6.39258 -4.45969 1.01608 1.43485 2.30268 2.33050 3.14258 3.22211 3.22740 3.36352 3.49151 4.06821 4.21700 4.30474 4.53575 4.61516 4.77069 4.98803 5.21936 5.28166 5.45252 5.62219 5.67301 5.72431 5.73431 5.83262 6.01683 6.04348 6.14000 6.41149 6.43531 6.50888 6.77090 6.86749 6.93103 7.08101 7.31026 7.36867 7.46036 7.51826 7.64637 7.78431 7.85965 7.98854 8.24999 8.58651 8.99411 9.20877 10.69055 Molecular weight = 297.12amu Principal moments of inertia in cm(-1) A = 0.012448 B = 0.005897 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.741586 B = 4746.896492 C = 6382.324937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.036 3.964 3 N -0.417 5.417 4 C -0.008 4.008 5 C 0.079 3.921 6 N -0.435 5.435 7 C 0.332 3.668 8 N -0.646 5.646 9 C 0.515 3.485 10 O -0.494 6.494 11 C 0.052 3.948 12 H 0.096 0.904 13 C -0.523 4.523 14 H 0.064 0.936 15 C 0.078 3.922 16 N -0.876 5.876 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.271 1.271 21 C -0.016 4.016 22 C -0.084 4.084 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.131 4.131 26 C -0.118 4.118 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.425 0.575 33 H 0.269 0.731 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.661 7.115 1.152 8.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.111 4.111 3 N -0.132 5.132 4 C -0.168 4.168 5 C -0.083 4.083 6 N -0.155 5.155 7 C 0.096 3.904 8 N -0.293 5.293 9 C 0.305 3.695 10 O -0.364 6.364 11 C 0.031 3.969 12 H 0.114 0.886 13 C -0.560 4.560 14 H 0.082 0.918 15 C -0.128 4.128 16 N -0.512 5.512 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.195 1.195 21 C -0.017 4.017 22 C -0.102 4.102 23 C -0.151 4.151 24 C -0.164 4.164 25 C -0.149 4.149 26 C -0.136 4.136 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.180 0.820 31 H 0.183 0.817 32 H 0.265 0.735 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.342 6.847 1.249 8.203 hybrid contribution -0.943 -0.278 -0.865 1.309 sum 3.399 6.569 0.384 7.406 Atomic orbital electron populations 1.20650 0.87830 1.03962 1.03422 1.21703 0.98048 0.87840 1.03501 1.68104 1.09110 1.28000 1.08018 1.23407 0.90654 0.99592 1.03151 1.23684 1.01647 0.88016 0.94928 1.68622 1.06139 1.28707 1.12059 1.19566 0.89772 0.87483 0.93548 1.44064 1.11354 1.02815 1.71037 1.22168 0.88259 0.85695 0.73417 1.90702 1.14042 1.87048 1.44639 1.18160 0.92260 0.84194 1.02263 0.88617 1.20689 1.01700 1.38740 0.94877 0.91819 1.24953 0.97063 0.94323 0.96443 1.69868 1.20113 1.37307 1.23878 0.86482 0.78944 0.79217 0.82884 1.20188 1.20882 1.19548 1.19986 0.93134 0.96369 0.92196 1.20831 0.94751 0.96543 0.98080 1.20965 0.99624 0.96502 0.98045 1.20824 1.00718 1.00113 0.94766 1.20908 0.97500 0.98468 0.98069 1.20992 0.98428 0.95912 0.98285 0.90098 0.90019 0.90237 0.81953 0.81722 0.73513 0.92091 0.87078 0.87499 0.87614 0.87451 0.86907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 9.75 36.00 0.35 -0.87 16 2 C 0.04 0.56 6.81 -82.18 -0.56 0.00 16 3 N -0.42 -6.23 10.42 -9.13 -0.10 -6.33 16 4 C -0.01 -0.10 11.21 -17.38 -0.19 -0.30 16 5 C 0.08 1.14 11.22 -17.39 -0.20 0.94 16 6 N -0.43 -8.24 8.05 -12.17 -0.10 -8.34 16 7 C 0.33 6.02 7.41 -154.41 -1.14 4.88 16 8 N -0.65 -12.20 5.20 -11.33 -0.06 -12.26 16 9 C 0.52 11.37 7.01 -10.99 -0.08 11.29 16 10 O -0.49 -11.98 13.69 5.55 0.08 -11.91 16 11 C 0.05 1.20 2.44 -94.07 -0.23 0.97 16 12 H 0.10 2.30 7.00 -51.93 -0.36 1.94 16 13 C -0.52 -12.56 7.46 -34.44 -0.26 -12.81 16 14 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 15 C 0.08 1.89 5.45 -17.82 -0.10 1.79 16 16 N -0.88 -22.07 12.78 55.43 0.71 -21.36 16 17 Si 0.90 19.29 29.54 -169.99 -5.02 14.26 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 C -0.02 -0.36 4.30 -104.62 -0.45 -0.81 16 22 C -0.08 -1.85 8.31 -39.58 -0.33 -2.18 16 23 C -0.13 -2.59 10.05 -39.58 -0.40 -2.99 16 24 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 25 C -0.13 -2.48 10.05 -39.59 -0.40 -2.88 16 26 C -0.12 -2.51 9.67 -39.58 -0.38 -2.89 16 27 H 0.08 0.87 8.14 -51.92 -0.42 0.44 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.93 6.56 -51.93 -0.34 0.59 16 30 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.17 1.82 8.06 -52.48 -0.42 1.40 16 32 H 0.42 7.18 6.58 -40.82 -0.27 6.91 16 33 H 0.27 6.50 8.31 -40.82 -0.34 6.17 16 34 H 0.11 2.49 7.89 -52.49 -0.41 2.08 16 35 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 38 H 0.11 2.30 7.96 -52.49 -0.42 1.88 16 LS Contribution 330.89 15.07 4.99 4.99 Total: -1.00 -30.04 330.89 -8.57 -38.61 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.31 Total: 11.23 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -4.76 Total: -8.91 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.46 Total: -48.28 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.08 Total: -11.91 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.04 -8.57 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628038607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.947 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds