Wall clock time and date at job start Fri Apr 10 2020 20:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47080 * 2 1 4 4 N 1.30941 * 122.90504 * 90.02502 * 3 2 1 5 5 C 1.29430 * 117.36543 * 179.97438 * 4 3 2 6 6 S 1.70953 * 110.38946 * 359.97438 * 5 4 3 7 7 C 1.35664 * 122.90312 * 269.98381 * 3 2 1 8 8 C 1.46682 * 126.13006 * 0.02562 * 7 3 2 9 9 O 1.21694 * 120.00059 * 359.97438 * 8 7 3 10 10 N 1.34768 * 120.00027 * 180.02562 * 8 7 3 11 11 C 1.46497 * 120.00335 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46935 * 34.99728 * 11 10 8 13 13 C 1.53008 * 109.47222 * 275.00196 * 11 10 8 14 14 C 1.52997 * 109.47609 * 154.99700 * 11 10 8 15 15 N 1.46493 * 109.47312 * 305.00536 * 14 11 10 16 16 C 1.46503 * 120.00066 * 269.99786 * 15 14 11 17 17 C 1.36933 * 120.00329 * 89.99278 * 15 14 11 18 18 H 1.08006 * 120.00099 * 22.34508 * 17 15 14 19 19 C 1.38817 * 120.00332 * 202.34078 * 17 15 14 20 20 N 1.31615 * 119.99566 * 11.36712 * 19 17 15 21 21 Si 1.86796 * 120.00239 * 191.36899 * 19 17 15 22 22 H 1.48505 * 109.46948 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47117 * 119.99906 * 21 19 17 24 24 H 1.48496 * 109.47287 * 240.00084 * 21 19 17 25 25 H 1.09007 * 109.46822 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47223 * 299.99791 * 1 2 3 27 27 H 1.08998 * 109.47045 * 60.00107 * 1 2 3 28 28 H 1.08993 * 109.47218 * 239.99516 * 2 1 3 29 29 H 1.09006 * 109.46966 * 119.99542 * 2 1 3 30 30 H 1.08001 * 124.80409 * 179.72970 * 5 4 3 31 31 H 0.96998 * 120.00233 * 0.02562 * 10 8 7 32 32 H 1.09003 * 109.47236 * 180.02562 * 13 11 10 33 33 H 1.08998 * 109.46783 * 299.99625 * 13 11 10 34 34 H 1.08991 * 109.46911 * 59.99455 * 13 11 10 35 35 H 1.09009 * 109.46944 * 65.00113 * 14 11 10 36 36 H 1.09002 * 109.47260 * 184.99923 * 14 11 10 37 37 H 1.08996 * 109.47349 * 94.22428 * 16 15 14 38 38 H 1.08996 * 109.47429 * 214.23262 * 16 15 14 39 39 H 1.09008 * 109.46991 * 334.22762 * 16 15 14 40 40 H 0.97007 * 119.99792 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2699 2.0913 1.0993 5 6 2.6997 3.3057 0.9744 6 16 2.8463 3.7186 -0.6780 7 6 2.2783 2.1155 -1.1390 8 6 2.1032 1.6207 -2.5087 9 8 1.7026 0.4876 -2.6998 10 7 2.3869 2.4206 -3.5556 11 6 2.2126 1.9263 -4.9236 12 1 1.3513 1.2594 -4.9619 13 6 3.4674 1.1639 -5.3542 14 6 1.9848 3.1083 -5.8679 15 7 0.8548 3.9069 -5.3870 16 6 -0.5044 3.5998 -5.8392 17 6 1.0689 4.9404 -4.5146 18 1 2.0428 5.4034 -4.4543 19 6 0.0341 5.3933 -3.7076 20 7 -1.0792 4.6978 -3.6130 21 14 0.2217 6.9898 -2.7562 22 1 1.5576 7.5767 -3.0326 23 1 -0.8347 7.9445 -3.1780 24 1 0.0912 6.7179 -1.3022 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.9292 3.9662 1.7976 31 1 2.7073 3.3234 -3.4033 32 1 3.3379 0.7965 -6.3722 33 1 4.3287 1.8307 -5.3158 34 1 3.6296 0.3218 -4.6814 35 1 2.8812 3.7279 -5.8972 36 1 1.7671 2.7367 -6.8692 37 1 -0.9861 2.9382 -5.1194 38 1 -1.0767 4.5235 -5.9235 39 1 -0.4615 3.1090 -6.8117 40 1 -1.8025 5.0144 -3.0494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754312445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:31:44 Heat of formation + Delta-G solvation = 24.859873 kcal Electronic energy + Delta-G solvation = -23007.432014 eV Core-core repulsion = 19756.799055 eV Total energy + Delta-G solvation = -3250.632958 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.06142 -38.71474 -36.31360 -34.07347 -33.08959 -31.58188 -30.44424 -28.98817 -26.21956 -25.81601 -25.63976 -23.04218 -22.34626 -21.21603 -19.87316 -18.97740 -18.06072 -16.82552 -16.30445 -15.65660 -14.99664 -14.91746 -14.59922 -14.04138 -13.84155 -13.68670 -13.62094 -13.20285 -13.01822 -12.89184 -12.26631 -12.11750 -11.93961 -11.64956 -11.44227 -11.34041 -10.99803 -10.90882 -10.73931 -10.57289 -10.44335 -10.29165 -10.06356 -9.88085 -9.70948 -9.27244 -9.23242 -8.64177 -8.61796 -8.31929 -6.82454 -5.78749 -3.24925 0.54303 1.47634 1.86227 2.74790 3.28582 3.36257 3.38761 3.62166 3.84381 4.33583 4.41462 5.14016 5.22790 5.29710 5.38060 5.48526 5.63536 5.68538 5.73481 5.77289 5.86898 5.94964 6.12735 6.19209 6.21239 6.26920 6.40647 6.47848 6.55135 6.62262 6.72149 6.84711 7.18504 7.35637 7.66520 7.76576 7.80107 8.16787 8.31729 8.78593 9.15812 9.79754 10.29769 11.25213 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.012279 B = 0.007699 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.713779 B = 3636.038314 C = 4725.184715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 C 0.129 3.871 4 N -0.475 5.475 5 C 0.012 3.988 6 S 0.180 5.820 7 C -0.269 4.269 8 C 0.597 3.403 9 O -0.540 6.540 10 N -0.680 5.680 11 C 0.119 3.881 12 H 0.080 0.920 13 C -0.160 4.160 14 C 0.141 3.859 15 N -0.598 5.598 16 C 0.164 3.836 17 C -0.259 4.259 18 H 0.066 0.934 19 C 0.011 3.989 20 N -0.896 5.896 21 Si 0.887 3.113 22 H -0.275 1.275 23 H -0.289 1.289 24 H -0.287 1.287 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.200 0.800 31 H 0.401 0.599 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.028 0.972 38 H 0.044 0.956 39 H -0.004 1.004 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.625 -4.028 3.781 10.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.094 4.094 3 C -0.009 4.009 4 N -0.189 5.189 5 C -0.283 4.283 6 S 0.435 5.565 7 C -0.393 4.393 8 C 0.382 3.618 9 O -0.421 6.421 10 N -0.328 5.328 11 C 0.011 3.989 12 H 0.098 0.902 13 C -0.219 4.219 14 C 0.013 3.987 15 N -0.320 5.320 16 C 0.020 3.980 17 C -0.389 4.389 18 H 0.084 0.916 19 C -0.188 4.188 20 N -0.540 5.540 21 Si 0.716 3.284 22 H -0.200 1.200 23 H -0.215 1.215 24 H -0.214 1.214 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.217 0.783 31 H 0.237 0.763 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.014 0.986 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.437 -3.970 3.716 10.037 hybrid contribution -0.300 0.783 0.933 1.254 sum 8.137 -3.186 4.649 9.898 Atomic orbital electron populations 1.21596 0.94029 1.01670 1.02159 1.20340 0.96669 0.88482 1.03875 1.20636 0.96817 0.98381 0.85052 1.66060 1.15070 1.06214 1.31508 1.28578 1.02766 0.96108 1.00806 1.84175 1.57532 1.12477 1.02321 1.25655 1.15959 0.97995 0.99692 1.16566 0.77678 0.85208 0.82387 1.90707 1.47605 1.18834 1.84966 1.45638 1.65462 1.16355 1.05386 1.21899 0.97077 0.98010 0.81935 0.90200 1.22164 0.98349 1.00295 1.01089 1.21204 0.92123 0.90821 0.94589 1.43887 1.01855 1.34106 1.52170 1.20797 0.85441 0.99121 0.92686 1.19096 0.97508 1.07822 1.14436 0.91616 1.24963 0.97339 0.98558 0.97978 1.70073 1.05972 1.37169 1.40780 0.86449 0.77848 0.84053 0.80006 1.19993 1.21541 1.21414 0.92236 0.93223 0.91907 0.87825 0.91019 0.78295 0.76255 0.92067 0.93006 0.92831 0.93335 0.92751 0.95380 0.93696 0.98552 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.89 37.16 0.37 -1.83 16 2 C -0.05 -0.87 5.75 -27.88 -0.16 -1.03 16 3 C 0.13 2.29 6.04 -83.89 -0.51 1.78 16 4 N -0.47 -7.86 10.50 -11.53 -0.12 -7.98 16 5 C 0.01 0.17 12.22 51.75 0.63 0.81 16 6 S 0.18 2.82 22.35 -107.50 -2.40 0.42 16 7 C -0.27 -4.99 6.48 -37.10 -0.24 -5.23 16 8 C 0.60 12.09 7.74 -12.86 -0.10 11.99 16 9 O -0.54 -11.72 13.93 5.19 0.07 -11.65 16 10 N -0.68 -13.19 4.48 -55.11 -0.25 -13.43 16 11 C 0.12 2.17 2.88 -67.93 -0.20 1.98 16 12 H 0.08 1.68 7.58 -51.93 -0.39 1.28 16 13 C -0.16 -2.35 9.49 37.16 0.35 -2.00 16 14 C 0.14 2.65 5.36 -4.05 -0.02 2.63 16 15 N -0.60 -13.93 2.82 -181.12 -0.51 -14.44 16 16 C 0.16 3.94 9.01 59.85 0.54 4.47 16 17 C -0.26 -6.44 8.02 -15.06 -0.12 -6.57 16 18 H 0.07 1.58 7.84 -52.48 -0.41 1.17 16 19 C 0.01 0.29 5.13 -17.43 -0.09 0.20 16 20 N -0.90 -25.06 10.59 55.49 0.59 -24.48 16 21 Si 0.89 20.56 29.57 -169.99 -5.03 15.53 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.10 1.78 6.01 -51.93 -0.31 1.47 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.40 7.75 6.59 -40.82 -0.27 7.48 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.86 8.03 -51.92 -0.42 0.44 16 36 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 37 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 38 H 0.04 1.16 7.19 -51.93 -0.37 0.78 16 39 H 0.00 -0.09 7.84 -51.92 -0.41 -0.49 16 40 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 343.30 15.07 5.17 5.17 Total: -1.00 -29.88 343.30 -7.91 -37.79 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.89 Total: 5.87 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 0.46 Total: 7.20 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.29 Total: -60.33 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.07 Total: -11.65 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.40 Total: 0.42 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.88 -7.91 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754312445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.649 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds