Wall clock time and date at job start Fri Apr 10 2020 20:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47366 * 2 1 4 4 N 1.30938 * 122.90508 * 269.96443 * 3 2 1 5 5 C 1.29435 * 117.36501 * 180.02562 * 4 3 2 6 6 S 1.70954 * 110.38724 * 359.75827 * 5 4 3 7 7 C 1.35660 * 122.90183 * 89.99734 * 3 2 1 8 8 C 1.46683 * 126.13260 * 359.92910 * 7 3 2 9 9 O 1.21684 * 120.00186 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99761 * 180.27344 * 8 7 3 11 11 C 1.46504 * 119.99614 * 179.72517 * 10 8 7 12 12 H 1.08999 * 109.47590 * 325.00233 * 11 10 8 13 13 C 1.53005 * 109.47022 * 85.00051 * 11 10 8 14 14 C 1.53003 * 109.46927 * 204.99943 * 11 10 8 15 15 N 1.46499 * 109.47093 * 55.00518 * 14 11 10 16 16 C 1.46509 * 119.99483 * 269.99799 * 15 14 11 17 17 C 1.36936 * 120.00582 * 89.99719 * 15 14 11 18 18 H 1.08001 * 119.99462 * 23.65030 * 17 15 14 19 19 C 1.38812 * 119.99987 * 203.65790 * 17 15 14 20 20 N 1.31615 * 120.00229 * 11.24892 * 19 17 15 21 21 Si 1.86797 * 119.99689 * 191.24853 * 19 17 15 22 22 H 1.48508 * 109.47360 * 59.99783 * 21 19 17 23 23 H 1.48500 * 109.47432 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.47523 * 299.99949 * 21 19 17 25 25 H 1.09007 * 109.47124 * 60.00061 * 1 2 3 26 26 H 1.09000 * 109.47315 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47319 * 300.00395 * 1 2 3 28 28 H 1.09006 * 109.47233 * 240.00268 * 2 1 3 29 29 H 1.09000 * 109.47167 * 120.00334 * 2 1 3 30 30 H 1.07999 * 124.80554 * 179.97438 * 5 4 3 31 31 H 0.96993 * 120.00829 * 359.72663 * 10 8 7 32 32 H 1.09002 * 109.46891 * 60.00220 * 13 11 10 33 33 H 1.09000 * 109.46876 * 179.97438 * 13 11 10 34 34 H 1.08994 * 109.46786 * 300.00068 * 13 11 10 35 35 H 1.09002 * 109.47141 * 174.99806 * 14 11 10 36 36 H 1.08996 * 109.47275 * 294.99930 * 14 11 10 37 37 H 1.08998 * 109.46734 * 94.59965 * 16 15 14 38 38 H 1.09005 * 109.46495 * 214.59799 * 16 15 14 39 39 H 1.08994 * 109.47080 * 334.59924 * 16 15 14 40 40 H 0.96994 * 119.99779 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2702 2.0912 -1.0993 5 6 2.7001 3.3057 -0.9744 6 16 2.8393 3.7211 0.6781 7 6 2.2780 2.1156 1.1390 8 6 2.1016 1.6213 2.5087 9 8 1.7001 0.4886 2.6998 10 7 2.3794 2.4234 3.5556 11 6 2.1975 1.9316 4.9236 12 1 1.3360 1.2648 4.9585 13 6 3.4499 1.1702 5.3626 14 6 1.9644 3.1156 5.8643 15 7 0.8369 3.9131 5.3755 16 6 1.0711 5.0170 4.4412 17 6 -0.4358 3.6267 5.7917 18 1 -0.5946 3.1075 6.7253 19 6 -1.5218 4.0036 5.0136 20 7 -1.3330 4.4327 3.7838 21 14 -3.2513 3.9019 5.7121 22 1 -3.3520 4.7695 6.9131 23 1 -4.2261 4.3585 4.6891 24 1 -3.5509 2.4972 6.0898 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.9341 3.9645 -1.7975 31 1 2.6998 3.3261 3.4034 32 1 4.3114 1.8371 5.3278 33 1 3.3147 0.8048 6.3806 34 1 3.6159 0.3269 4.6925 35 1 1.7411 2.7460 6.8651 36 1 2.8605 3.7352 5.8974 37 1 0.9352 4.6631 3.4193 38 1 0.3638 5.8212 4.6444 39 1 2.0885 5.3880 4.5649 40 1 -2.0918 4.6964 3.2403 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754312446.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:31:46 Heat of formation + Delta-G solvation = 25.854417 kcal Electronic energy + Delta-G solvation = -22809.251247 eV Core-core repulsion = 19558.661415 eV Total energy + Delta-G solvation = -3250.589831 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.125 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16264 -38.81474 -36.34900 -34.10387 -33.14928 -31.54500 -30.51696 -29.09621 -26.20969 -25.95300 -25.58236 -23.10706 -22.40792 -21.14273 -20.07868 -19.01984 -18.14880 -16.82913 -16.44958 -15.68184 -15.06217 -14.92679 -14.64025 -14.10751 -13.88033 -13.75900 -13.57002 -13.33320 -13.12553 -12.88877 -12.23160 -12.15939 -12.00211 -11.70923 -11.46165 -11.17562 -11.01665 -10.84471 -10.79191 -10.62816 -10.57912 -10.24675 -10.00605 -9.87454 -9.80592 -9.37011 -9.33674 -8.74120 -8.60908 -8.39910 -6.76602 -5.73869 -3.20447 0.44138 1.35701 1.73218 2.66137 3.39225 3.44589 3.44761 3.52325 3.73235 4.24696 4.49837 5.05710 5.13365 5.25899 5.36639 5.47175 5.64193 5.65691 5.69705 5.71855 5.83330 5.96523 6.07269 6.16378 6.19752 6.22512 6.44337 6.47530 6.52150 6.59296 6.61585 6.84576 7.09809 7.28539 7.63299 7.70573 7.79055 8.00715 8.37726 8.67072 9.21393 9.83604 10.31868 11.31102 Molecular weight = 297.13amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.005803 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.911518 B = 4823.632395 C = 5238.996660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 C 0.134 3.866 4 N -0.474 5.474 5 C 0.019 3.981 6 S 0.169 5.831 7 C -0.271 4.271 8 C 0.598 3.402 9 O -0.530 6.530 10 N -0.691 5.691 11 C 0.117 3.883 12 H 0.089 0.911 13 C -0.159 4.159 14 C 0.142 3.858 15 N -0.596 5.596 16 C 0.160 3.840 17 C -0.258 4.258 18 H 0.067 0.933 19 C 0.007 3.993 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.283 1.283 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.202 0.798 31 H 0.392 0.608 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.041 0.959 37 H 0.032 0.968 38 H 0.044 0.956 39 H -0.006 1.006 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.210 -1.767 -6.164 12.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.095 4.095 3 C -0.004 4.004 4 N -0.188 5.188 5 C -0.276 4.276 6 S 0.424 5.576 7 C -0.396 4.396 8 C 0.383 3.617 9 O -0.410 6.410 10 N -0.339 5.339 11 C 0.010 3.990 12 H 0.107 0.893 13 C -0.218 4.218 14 C 0.014 3.986 15 N -0.319 5.319 16 C 0.015 3.985 17 C -0.387 4.387 18 H 0.085 0.915 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.733 3.267 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.209 1.209 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.218 0.782 31 H 0.227 0.773 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.012 0.988 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.043 -1.695 -6.149 12.753 hybrid contribution -1.247 -0.182 -0.065 1.262 sum 9.796 -1.877 -6.214 11.752 Atomic orbital electron populations 1.21602 0.93879 1.01821 1.02226 1.20364 0.96774 0.88403 1.03955 1.20658 0.96316 0.98414 0.85005 1.66066 1.14963 1.06270 1.31466 1.28589 1.02391 0.96067 1.00534 1.83962 1.58299 1.12429 1.02875 1.25665 1.16209 0.98029 0.99665 1.16555 0.77579 0.85317 0.82276 1.90729 1.46672 1.18759 1.84829 1.45704 1.66234 1.15967 1.06027 1.21946 0.97355 0.98525 0.81167 0.89292 1.22160 0.98156 1.00257 1.01276 1.21215 0.90957 0.90774 0.95702 1.43870 1.02459 1.32241 1.53283 1.20868 0.93772 0.90092 0.93719 1.19110 0.82256 1.35620 1.01740 0.91477 1.25015 0.97999 1.01108 0.95066 1.70018 1.29520 1.48278 1.06952 0.86363 0.84468 0.77929 0.77907 1.21116 1.21717 1.20938 0.93176 0.92154 0.91819 0.90927 0.87805 0.78159 0.77324 0.93190 0.91896 0.92859 0.92074 0.94024 0.95010 0.93770 0.98776 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.89 37.16 0.37 -1.82 16 2 C -0.06 -0.87 5.75 -27.88 -0.16 -1.03 16 3 C 0.13 2.25 6.04 -83.90 -0.51 1.74 16 4 N -0.47 -7.31 10.50 -11.53 -0.12 -7.43 16 5 C 0.02 0.24 12.22 51.75 0.63 0.87 16 6 S 0.17 2.29 22.35 -107.50 -2.40 -0.11 16 7 C -0.27 -4.71 6.48 -37.10 -0.24 -4.95 16 8 C 0.60 11.71 7.74 -12.85 -0.10 11.61 16 9 O -0.53 -11.45 13.93 5.20 0.07 -11.38 16 10 N -0.69 -12.78 4.41 -55.11 -0.24 -13.02 16 11 C 0.12 2.17 2.88 -67.92 -0.20 1.97 16 12 H 0.09 1.97 7.58 -51.93 -0.39 1.58 16 13 C -0.16 -2.35 9.48 37.16 0.35 -2.00 16 14 C 0.14 2.70 5.33 -4.04 -0.02 2.68 16 15 N -0.60 -14.11 2.78 -181.11 -0.50 -14.61 16 16 C 0.16 3.67 7.61 59.85 0.46 4.12 16 17 C -0.26 -6.89 9.66 -15.06 -0.15 -7.04 16 18 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 19 C 0.01 0.19 5.13 -17.43 -0.09 0.10 16 20 N -0.90 -25.74 10.66 55.49 0.59 -25.15 16 21 Si 0.90 21.96 29.57 -169.99 -5.03 16.94 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.10 1.75 6.01 -51.93 -0.31 1.44 16 30 H 0.20 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.39 6.82 6.36 -40.82 -0.26 6.56 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 36 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 37 H 0.03 0.78 6.90 -51.93 -0.36 0.42 16 38 H 0.04 1.12 7.30 -51.93 -0.38 0.74 16 39 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -31.35 342.83 -7.98 -39.33 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.86 Total: 4.00 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 0.35 Total: 6.26 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -0.28 Total: -60.21 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.07 Total: -11.38 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.40 Total: -0.11 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.35 -7.98 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754312446.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.188 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds