Wall clock time and date at job start Fri Apr 10 2020 20:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86796 * 119.99949 * 2 1 4 4 H 1.48508 * 109.46947 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47186 * 299.99382 * 3 2 1 6 6 H 1.48506 * 109.47141 * 59.99894 * 3 2 1 7 7 C 1.39937 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99872 * 162.97001 * 7 2 1 9 9 C 1.41428 * 119.99723 * 342.97579 * 7 2 1 10 10 C 1.40798 * 120.62220 * 155.86815 * 9 7 2 11 11 N 1.31466 * 120.56220 * 179.97438 * 10 9 7 12 12 C 1.32014 * 122.06028 * 0.02562 * 11 10 9 13 13 C 1.39287 * 121.20766 * 359.97438 * 12 11 10 14 14 N 1.39729 * 120.36414 * 180.02562 * 13 12 11 15 15 C 1.46501 * 119.99456 * 359.97438 * 14 13 12 16 16 C 1.53001 * 109.46976 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47421 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47421 * 179.97438 * 17 16 15 19 19 C 1.50695 * 109.47222 * 179.97438 * 18 17 16 20 20 C 1.38226 * 119.61762 * 125.00385 * 19 18 17 21 21 C 1.38627 * 119.16039 * 179.97438 * 20 19 18 22 22 C 1.38669 * 118.41930 * 359.97438 * 21 20 19 23 23 C 1.38174 * 119.16825 * 0.02562 * 22 21 20 24 24 N 1.31856 * 119.61814 * 304.72418 * 19 18 17 25 25 C 1.38700 * 119.27773 * 359.97438 * 13 12 11 26 26 H 0.96997 * 119.99980 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.71556 * 359.95410 * 10 9 7 28 28 H 1.07997 * 119.39587 * 179.97438 * 12 11 10 29 29 H 0.96999 * 120.00073 * 179.97438 * 14 13 12 30 30 H 1.08991 * 109.47284 * 299.99837 * 15 14 13 31 31 H 1.09006 * 109.47204 * 60.00241 * 15 14 13 32 32 H 1.09005 * 109.47044 * 300.00056 * 16 15 14 33 33 H 1.09001 * 109.47191 * 59.99508 * 16 15 14 34 34 H 1.08998 * 109.46688 * 299.99764 * 17 16 15 35 35 H 1.08997 * 109.47071 * 59.99909 * 17 16 15 36 36 H 1.08999 * 109.47124 * 300.00351 * 18 17 16 37 37 H 1.09010 * 109.46980 * 59.99535 * 18 17 16 38 38 H 1.08007 * 120.41833 * 359.94727 * 20 19 18 39 39 H 1.07998 * 120.78553 * 180.02562 * 21 20 19 40 40 H 1.08001 * 120.41598 * 180.02562 * 22 21 20 41 41 H 1.07996 * 119.62309 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.92796 * 180.27059 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3463 0.0006 5 1 1.8837 2.3963 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0525 -1.2325 -0.2734 9 6 1.3473 -2.4097 0.3597 10 6 1.8232 -3.6549 -0.0934 11 7 1.2084 -4.7676 0.2416 12 6 0.1323 -4.7707 1.0062 13 6 -0.4066 -3.5845 1.4986 14 7 -1.5461 -3.6084 2.3070 15 6 -2.1809 -4.8859 2.6403 16 6 -3.3990 -4.6330 3.5310 17 6 -4.0617 -5.9672 3.8798 18 6 -5.2794 -5.7144 4.7710 19 6 -5.9324 -7.0285 5.1139 20 6 -6.1352 -7.3652 6.4391 21 6 -6.7372 -8.5762 6.7438 22 6 -7.1150 -9.4066 5.6995 23 6 -6.8801 -9.0028 4.3992 24 7 -6.3088 -7.8412 4.1463 25 6 0.2008 -2.3793 1.1787 26 1 -0.4850 0.8400 -0.0004 27 1 2.7007 -3.6962 -0.7218 28 1 -0.3389 -5.7103 1.2544 29 1 -1.9167 -2.7791 2.6473 30 1 -2.4975 -5.3843 1.7242 31 1 -1.4686 -5.5182 3.1705 32 1 -3.0820 -4.1347 4.4472 33 1 -4.1114 -4.0005 3.0013 34 1 -4.3786 -6.4658 2.9638 35 1 -3.3491 -6.5993 4.4097 36 1 -4.9621 -5.2159 5.6869 37 1 -5.9922 -5.0820 4.2414 38 1 -5.8280 -6.6936 7.2272 39 1 -6.9087 -8.8655 7.7701 40 1 -7.5870 -10.3571 5.9001 41 1 -7.1717 -9.6436 3.5803 42 1 -0.1920 -1.4441 1.5495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168798564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:33:18 Heat of formation + Delta-G solvation = 41.139419 kcal Electronic energy + Delta-G solvation = -21660.036946 eV Core-core repulsion = 18410.499065 eV Total energy + Delta-G solvation = -3249.537881 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48285 -38.39442 -36.44779 -34.57585 -33.85539 -32.68938 -31.87182 -30.22188 -29.11999 -26.93848 -25.56249 -24.12797 -23.68840 -22.24003 -21.52993 -20.80412 -20.41349 -17.21575 -17.15053 -16.57371 -15.95630 -15.65803 -15.54580 -15.32289 -14.83127 -14.74733 -14.37266 -13.79805 -13.66304 -13.41706 -13.30330 -12.90860 -12.36974 -12.33352 -12.20966 -11.64824 -11.54376 -11.44468 -11.31399 -11.13935 -11.02165 -10.86255 -10.67708 -10.48271 -10.17565 -9.83442 -9.65483 -9.39541 -9.27349 -9.24140 -8.00005 -7.69466 -6.79838 -6.31708 -4.41883 0.80168 0.97226 2.77383 3.06387 3.12240 3.17503 3.29067 3.49074 3.91487 3.99462 4.19022 4.44509 4.53441 4.70395 4.74018 4.79914 4.93126 4.98245 5.11115 5.32320 5.36223 5.48168 5.58038 5.65450 5.75561 5.81423 5.82591 5.86656 5.98604 6.09871 6.20999 6.32805 6.35387 6.42395 6.63498 6.73903 6.94830 7.14829 7.22357 7.64461 7.73132 7.78627 8.02024 8.26273 8.53749 8.67860 8.81392 8.93401 9.81593 10.15475 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.030112 B = 0.002166 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.636516 B =12925.860276 C =13564.258152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.452 4.452 8 H 0.082 0.918 9 C 0.094 3.906 10 C -0.052 4.052 11 N -0.446 5.446 12 C -0.097 4.097 13 C 0.175 3.825 14 N -0.757 5.757 15 C 0.135 3.865 16 C -0.129 4.129 17 C -0.106 4.106 18 C -0.070 4.070 19 C 0.135 3.865 20 C -0.173 4.173 21 C -0.074 4.074 22 C -0.184 4.184 23 C 0.103 3.897 24 N -0.480 5.480 25 C -0.210 4.210 26 H 0.279 0.721 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.389 0.611 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.155 0.845 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.918 -10.260 13.420 22.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.482 4.482 8 H 0.100 0.900 9 C 0.089 3.911 10 C -0.216 4.216 11 N -0.154 5.154 12 C -0.257 4.257 13 C 0.073 3.927 14 N -0.390 5.390 15 C 0.010 3.990 16 C -0.167 4.167 17 C -0.144 4.144 18 C -0.108 4.108 19 C -0.002 4.002 20 C -0.193 4.193 21 C -0.100 4.100 22 C -0.204 4.204 23 C -0.054 4.054 24 N -0.189 5.189 25 C -0.240 4.240 26 H 0.090 0.910 27 H 0.140 0.860 28 H 0.132 0.868 29 H 0.223 0.777 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.173 0.827 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.721 -10.876 12.259 22.029 hybrid contribution -0.472 1.585 1.369 2.146 sum -15.193 -9.291 13.628 22.424 Atomic orbital electron populations 1.69851 1.07635 1.29042 1.34874 1.25950 0.94745 1.01409 0.92180 0.86252 0.81085 0.80836 0.78504 1.18270 1.19985 1.19775 1.19570 0.97924 0.90878 1.39838 0.89991 1.18281 0.91080 0.93405 0.88296 1.22334 1.03636 0.88159 1.07497 1.66824 1.06839 1.31966 1.09728 1.21235 1.00068 0.94555 1.09792 1.18689 0.87080 0.95533 0.91368 1.44365 1.30401 1.06652 1.57614 1.21068 0.93085 0.87292 0.97572 1.21767 0.97314 0.97638 0.99961 1.21394 0.95561 0.97295 1.00178 1.20600 0.97376 0.91853 1.01002 1.21380 0.94003 0.95839 0.89009 1.22034 1.01575 0.98095 0.97594 1.21592 0.95096 0.93546 0.99812 1.22135 1.02722 1.01349 0.94169 1.22796 0.93997 0.92673 0.95968 1.67511 1.10336 1.04038 1.37029 1.21071 1.01857 0.95011 1.06105 0.90984 0.85979 0.86806 0.77718 0.93118 0.93308 0.91641 0.91391 0.90500 0.91967 0.90269 0.89797 0.84807 0.84951 0.84929 0.82749 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.22 10.93 55.55 0.61 -19.61 16 2 C 0.08 1.88 5.18 -17.34 -0.09 1.79 16 3 Si 0.91 18.47 29.59 -169.99 -5.03 13.44 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.45 -11.98 9.08 -37.73 -0.34 -12.32 16 8 H 0.08 2.07 7.90 -52.49 -0.41 1.66 16 9 C 0.09 2.58 5.59 -106.70 -0.60 1.99 16 10 C -0.05 -1.37 10.97 -16.74 -0.18 -1.55 16 11 N -0.45 -11.67 10.33 -12.37 -0.13 -11.80 16 12 C -0.10 -2.38 10.49 -17.08 -0.18 -2.56 16 13 C 0.17 4.16 6.67 -83.70 -0.56 3.61 16 14 N -0.76 -14.37 5.74 -58.57 -0.34 -14.71 16 15 C 0.14 2.08 4.92 -4.04 -0.02 2.06 16 16 C -0.13 -1.49 5.33 -26.73 -0.14 -1.63 16 17 C -0.11 -1.11 5.07 -26.73 -0.14 -1.25 16 18 C -0.07 -0.63 5.61 -27.88 -0.16 -0.79 16 19 C 0.14 1.34 6.17 -82.59 -0.51 0.83 16 20 C -0.17 -1.40 9.71 -39.44 -0.38 -1.78 16 21 C -0.07 -0.52 10.18 -39.28 -0.40 -0.92 16 22 C -0.18 -1.30 10.11 -39.45 -0.40 -1.70 16 23 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 24 N -0.48 -5.33 9.89 -9.48 -0.09 -5.42 16 25 C -0.21 -5.51 8.66 -38.39 -0.33 -5.84 16 26 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 27 H 0.12 3.01 8.06 -52.49 -0.42 2.58 16 28 H 0.11 2.52 6.73 -52.49 -0.35 2.17 16 29 H 0.39 6.89 8.49 -40.82 -0.35 6.54 16 30 H 0.05 0.82 7.96 -51.93 -0.41 0.41 16 31 H 0.05 0.76 7.96 -51.93 -0.41 0.35 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.58 7.87 -51.93 -0.41 0.17 16 37 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.13 0.80 7.95 -52.48 -0.42 0.38 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 40 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.12 3.30 6.23 -52.49 -0.33 2.97 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -30.83 354.86 -10.28 -41.11 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -6.02 Total: 11.01 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -4.62 Total: -19.37 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.05 Total: -51.54 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.83 -10.28 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168798564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.253 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds