Wall clock time and date at job start Fri Apr 10 2020 20:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99873 * 2 1 4 4 C 1.50704 * 109.47120 * 179.97438 * 3 2 1 5 5 C 1.35310 * 126.66674 * 89.99550 * 4 3 2 6 6 C 1.42267 * 103.92174 * 179.97438 * 5 4 3 7 7 C 1.48330 * 126.94036 * 180.02562 * 6 5 4 8 8 O 1.21497 * 120.00111 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00363 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99887 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47305 * 324.99454 * 10 9 7 12 12 C 1.53000 * 109.47324 * 85.00044 * 10 9 7 13 13 C 1.53007 * 109.46928 * 204.99512 * 10 9 7 14 14 N 1.46496 * 109.46772 * 54.99940 * 13 10 9 15 15 C 1.46508 * 120.00316 * 269.99640 * 14 13 10 16 16 C 1.36941 * 120.00329 * 90.00279 * 14 13 10 17 17 H 1.07997 * 119.99213 * 20.37767 * 16 14 13 18 18 C 1.38811 * 120.00474 * 200.37876 * 16 14 13 19 19 N 1.31615 * 119.99823 * 15.00379 * 18 16 14 20 20 Si 1.86800 * 120.00208 * 195.00342 * 18 16 14 21 21 H 1.48499 * 109.47263 * 85.00157 * 20 18 16 22 22 H 1.48502 * 109.47204 * 205.00513 * 20 18 16 23 23 H 1.48505 * 109.46924 * 325.00040 * 20 18 16 24 24 N 1.30980 * 106.12550 * 0.26372 * 6 5 4 25 25 O 1.20911 * 111.43664 * 359.53229 * 24 6 5 26 26 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47308 * 300.00387 * 1 2 3 28 28 H 1.09003 * 109.47037 * 60.00180 * 1 2 3 29 29 H 1.09002 * 109.47430 * 59.99502 * 3 2 1 30 30 H 1.08999 * 109.47233 * 299.99656 * 3 2 1 31 31 H 1.08000 * 128.03811 * 359.96633 * 5 4 3 32 32 H 0.96998 * 119.99812 * 359.97438 * 9 7 6 33 33 H 1.08996 * 109.47412 * 59.99475 * 12 10 9 34 34 H 1.08999 * 109.47412 * 180.02562 * 12 10 9 35 35 H 1.09008 * 109.46616 * 299.99515 * 12 10 9 36 36 H 1.08999 * 109.47057 * 174.99815 * 13 10 9 37 37 H 1.09001 * 109.46914 * 295.00365 * 13 10 9 38 38 H 1.09000 * 109.46511 * 95.13189 * 15 14 13 39 39 H 1.09000 * 109.47155 * 215.12912 * 15 14 13 40 40 H 1.08993 * 109.46794 * 335.13619 * 15 14 13 41 41 H 0.96998 * 120.00123 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.3185 1.1224 -1.0844 6 6 5.6263 1.0196 -0.5338 7 6 6.9031 0.9191 -1.2819 8 8 6.8969 0.9190 -2.4969 9 7 8.0701 0.8268 -0.6140 10 6 9.3311 0.7270 -1.3531 11 1 9.1741 0.1480 -2.2631 12 6 9.8202 2.1298 -1.7190 13 6 10.3795 0.0327 -0.4814 14 7 9.8614 -1.2619 -0.0325 15 6 9.1119 -1.3557 1.2229 16 6 10.0777 -2.3847 -0.7861 17 1 10.8784 -2.4026 -1.5106 18 6 9.2678 -3.4996 -0.6189 19 7 8.1279 -3.3935 0.0304 20 14 9.7958 -5.1505 -1.3155 21 1 10.6916 -5.8326 -0.3473 22 1 8.5964 -5.9919 -1.5579 23 1 10.5191 -4.9393 -2.5952 24 7 5.4748 1.0264 0.7672 25 8 4.3099 1.1242 1.0760 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 4.0349 1.1441 -2.1262 32 1 8.0750 0.8265 0.3559 33 1 9.9772 2.7088 -0.8090 34 1 10.7582 2.0555 -2.2693 35 1 9.0733 2.6244 -2.3401 36 1 11.2897 -0.1213 -1.0610 37 1 10.6016 0.6555 0.3852 38 1 8.0439 -1.2964 1.0136 39 1 9.3348 -2.3055 1.7091 40 1 9.3995 -0.5349 1.8798 41 1 7.5618 -4.1724 0.1469 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754326434.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:34:30 Heat of formation + Delta-G solvation = 11.482977 kcal Electronic energy + Delta-G solvation = -24520.604967 eV Core-core repulsion = 20826.639072 eV Total energy + Delta-G solvation = -3693.965895 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.95913 -39.21047 -38.21094 -36.38342 -34.06478 -33.88084 -32.73732 -31.16493 -30.11942 -27.94786 -26.15434 -25.84711 -25.61880 -24.65935 -22.62446 -21.61201 -20.24271 -19.68121 -17.86556 -17.76811 -16.76767 -16.57618 -16.49297 -16.10463 -15.49259 -15.12378 -14.82130 -14.43333 -13.88382 -13.64626 -13.54310 -13.24982 -13.08391 -12.87361 -12.47309 -12.14401 -11.99684 -11.79668 -11.45249 -11.44290 -11.09120 -10.83325 -10.76038 -10.53069 -10.26128 -10.18247 -10.08455 -9.96099 -9.82087 -9.70635 -9.58925 -8.61075 -8.40015 -6.75765 -5.68683 -3.12834 1.22598 1.74019 2.84230 3.37095 3.42289 3.48161 3.49743 3.68956 3.77028 4.20225 4.51375 4.55328 4.74822 4.94202 5.01868 5.06012 5.12595 5.34116 5.39751 5.44626 5.48413 5.50930 5.68629 5.84133 5.92211 5.98700 6.10329 6.22874 6.46302 6.51919 6.68155 6.71741 6.85097 7.08306 7.36550 7.72069 7.84344 7.92221 8.19907 8.40774 8.63682 9.25511 9.89012 10.36108 11.36463 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.013667 B = 0.004500 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.237871 B = 6220.417202 C = 7471.360391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.148 3.852 4 C -0.051 4.051 5 C -0.153 4.153 6 C -0.016 4.016 7 C 0.600 3.400 8 O -0.535 6.535 9 N -0.679 5.679 10 C 0.115 3.885 11 H 0.089 0.911 12 C -0.159 4.159 13 C 0.142 3.858 14 N -0.598 5.598 15 C 0.161 3.839 16 C -0.259 4.259 17 H 0.070 0.930 18 C 0.005 3.995 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.280 1.280 24 N -0.318 5.318 25 O 0.130 5.870 26 H 0.091 0.909 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.180 0.820 32 H 0.402 0.598 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.043 0.957 38 H 0.032 0.968 39 H 0.044 0.956 40 H -0.004 1.004 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.958 13.152 1.503 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.071 3.929 4 C -0.114 4.114 5 C -0.175 4.175 6 C -0.176 4.176 7 C 0.383 3.617 8 O -0.411 6.411 9 N -0.328 5.328 10 C 0.007 3.993 11 H 0.107 0.893 12 C -0.218 4.218 13 C 0.014 3.986 14 N -0.320 5.320 15 C 0.016 3.984 16 C -0.388 4.388 17 H 0.088 0.912 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.734 3.266 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.206 1.206 24 N -0.017 5.017 25 O 0.051 5.949 26 H 0.109 0.891 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.198 0.802 32 H 0.237 0.763 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.014 0.986 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.009 12.737 1.673 16.918 hybrid contribution -0.504 -0.890 -0.685 1.231 sum -11.514 11.847 0.989 16.550 Atomic orbital electron populations 1.22810 0.79967 1.03458 1.00225 1.88038 1.20311 1.26306 1.95495 1.20597 0.83299 0.86137 1.02859 1.23835 0.94907 1.06648 0.86027 1.22450 0.90011 1.03713 1.01335 1.23660 0.97219 1.06780 0.89916 1.16749 0.81578 0.77107 0.86287 1.90741 1.86495 1.51337 1.12559 1.45680 1.05476 1.71161 1.10511 1.22022 0.84121 0.95340 0.97771 0.89314 1.22158 1.01174 0.97473 1.01036 1.21206 0.94426 0.87337 0.95632 1.43945 1.64045 1.02331 1.21659 1.20855 0.95590 0.96810 0.85118 1.19185 1.10601 0.90672 1.18365 0.91236 1.24957 0.95237 0.99045 1.00177 1.70079 1.10319 1.28669 1.45657 0.86288 0.77390 0.84242 0.78707 1.21509 1.21837 1.20560 1.74190 0.96903 1.14686 1.15882 1.84781 1.11567 1.65339 1.33165 0.89082 0.93606 0.93660 0.90555 0.89536 0.80227 0.76301 0.93055 0.91767 0.92908 0.91966 0.93874 0.94992 0.93773 0.98591 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.29 10.69 -35.23 -0.38 -4.67 16 3 C 0.15 1.33 6.50 36.01 0.23 1.57 16 4 C -0.05 -0.67 7.10 -35.35 -0.25 -0.93 16 5 C -0.15 -2.33 10.92 -39.08 -0.43 -2.76 16 6 C -0.02 -0.31 7.19 -82.53 -0.59 -0.90 16 7 C 0.60 12.59 7.81 -12.11 -0.09 12.50 16 8 O -0.54 -12.37 16.61 5.37 0.09 -12.28 16 9 N -0.68 -13.63 4.42 -54.59 -0.24 -13.87 16 10 C 0.11 2.23 2.88 -67.93 -0.20 2.04 16 11 H 0.09 2.04 7.58 -51.93 -0.39 1.65 16 12 C -0.16 -2.46 9.48 37.16 0.35 -2.11 16 13 C 0.14 2.85 5.33 -4.04 -0.02 2.83 16 14 N -0.60 -14.93 2.78 -181.11 -0.50 -15.44 16 15 C 0.16 3.98 7.60 59.85 0.45 4.43 16 16 C -0.26 -7.21 9.68 -15.06 -0.15 -7.35 16 17 H 0.07 1.89 7.86 -52.49 -0.41 1.48 16 18 C 0.00 0.13 5.06 -17.43 -0.09 0.04 16 19 N -0.90 -27.09 10.67 55.49 0.59 -26.50 16 20 Si 0.90 22.59 29.58 -169.99 -5.03 17.56 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 N -0.32 -5.67 11.84 33.29 0.39 -5.27 16 25 O 0.13 1.99 11.18 17.25 0.19 2.19 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.18 2.39 8.06 -52.49 -0.42 1.96 16 32 H 0.40 7.86 6.94 -40.82 -0.28 7.57 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.06 1.19 8.03 -51.93 -0.42 0.77 16 37 H 0.04 0.77 7.86 -51.93 -0.41 0.36 16 38 H 0.03 0.86 6.97 -51.93 -0.36 0.50 16 39 H 0.04 1.19 7.22 -51.93 -0.37 0.81 16 40 H 0.00 -0.09 7.83 -51.93 -0.41 -0.50 16 41 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 351.45 15.07 5.30 5.30 Total: -1.00 -34.41 351.45 -5.25 -39.66 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.00 Total: 2.63 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 0.34 Total: 10.70 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: 0.24 Total: -61.08 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.09 Total: -14.76 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.41 -5.25 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754326434.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.139 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds