Wall clock time and date at job start Fri Apr 10 2020 20:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39769 * 119.99711 * 2 1 4 4 C 1.38915 * 120.06918 * 185.28338 * 3 2 1 5 5 C 1.38104 * 119.91990 * 179.74550 * 4 3 2 6 6 C 1.38288 * 120.07300 * 0.53392 * 5 4 3 7 7 C 1.38292 * 120.15294 * 359.73869 * 6 5 4 8 8 C 1.38096 * 120.07254 * 359.97438 * 7 6 5 9 9 C 1.39079 * 120.00033 * 179.97438 * 2 1 3 10 10 C 1.39133 * 119.70974 * 265.11826 * 9 2 1 11 11 C 1.38300 * 119.10016 * 180.02562 * 10 9 2 12 12 C 1.38892 * 118.50328 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.33640 * 179.97438 * 12 11 10 14 14 N 1.46897 * 109.47238 * 90.00267 * 13 12 11 15 15 C 1.46904 * 111.00200 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47036 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00061 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99800 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99777 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99872 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47297 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46967 * 120.00400 * 20 18 16 23 23 H 1.48503 * 109.47482 * 240.00205 * 20 18 16 24 24 C 1.38039 * 119.32598 * 0.25724 * 12 11 10 25 25 N 1.31955 * 120.85938 * 359.47754 * 24 12 11 26 26 H 1.08991 * 109.47028 * 270.00364 * 1 2 3 27 27 H 1.09006 * 109.47070 * 30.00143 * 1 2 3 28 28 H 1.08996 * 109.47043 * 150.00127 * 1 2 3 29 29 H 1.07993 * 120.04206 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.96635 * 180.29138 * 5 4 3 31 31 H 1.08007 * 119.92583 * 179.72413 * 6 5 4 32 32 H 1.08000 * 119.96311 * 180.02562 * 7 6 5 33 33 H 1.08001 * 120.03993 * 179.97438 * 8 7 6 34 34 H 1.07996 * 120.45245 * 0.02562 * 10 9 2 35 35 H 1.07999 * 120.75375 * 179.97438 * 11 10 9 36 36 H 1.09004 * 109.47171 * 330.00328 * 13 12 11 37 37 H 1.09003 * 109.47283 * 210.00625 * 13 12 11 38 38 H 1.00904 * 110.99752 * 303.95084 * 14 13 12 39 39 H 1.09000 * 109.47075 * 59.99464 * 15 14 13 40 40 H 1.09001 * 109.46499 * 299.99746 * 15 14 13 41 41 H 0.97001 * 120.00083 * 180.02562 * 19 18 16 42 42 H 1.08003 * 119.57032 * 179.72134 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1638 1.2105 0.0000 4 6 3.5485 1.2148 -0.1107 5 6 4.2355 2.4128 -0.1157 6 6 3.5473 3.6067 0.0005 7 6 2.1693 3.6057 0.1166 8 6 1.4757 2.4116 0.1163 9 6 2.1604 -1.2045 0.0005 10 6 2.5943 -1.7497 1.2048 11 6 3.2851 -2.9477 1.1907 12 6 3.5195 -3.5632 -0.0322 13 6 4.2686 -4.8692 -0.0957 14 7 3.3176 -5.9845 0.0024 15 6 4.0138 -7.2768 -0.0555 16 6 3.0079 -8.3943 0.0472 17 1 1.9567 -8.1672 0.1460 18 6 3.4297 -9.7066 0.0149 19 7 4.7099 -9.9830 -0.1050 20 14 2.1831 -11.0917 0.1429 21 1 0.8186 -10.5196 0.2694 22 1 2.2543 -11.9360 -1.0768 23 1 2.4852 -11.9210 1.3372 24 6 3.0645 -2.9634 -1.1892 25 7 2.4034 -1.8223 -1.1452 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 4.0870 0.2826 -0.1965 30 1 5.3116 2.4173 -0.2064 31 1 4.0873 4.5421 0.0008 32 1 1.6349 4.5399 0.2067 33 1 0.3995 2.4114 0.2074 34 1 2.3943 -1.2443 2.1380 35 1 3.6345 -3.3946 2.1097 36 1 4.9772 -4.9223 0.7309 37 1 4.8076 -4.9334 -1.0409 38 1 2.7601 -5.9117 0.8403 39 1 4.7204 -7.3462 0.7715 40 1 4.5512 -7.3578 -1.0004 41 1 5.0067 -10.9062 -0.1280 42 1 3.2486 -3.4364 -2.1426 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000437139708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:33:02 Heat of formation + Delta-G solvation = 77.913933 kcal Electronic energy + Delta-G solvation = -22243.979694 eV Core-core repulsion = 18996.036475 eV Total energy + Delta-G solvation = -3247.943218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.71901 -39.27722 -36.61133 -35.30705 -32.93701 -32.13998 -31.35315 -30.74649 -29.76300 -27.52628 -26.15320 -24.34374 -23.59631 -22.63175 -22.04258 -21.43736 -20.77455 -18.20095 -16.99489 -16.79562 -16.58674 -15.78663 -15.32862 -14.74168 -14.66706 -14.60514 -14.40017 -14.11212 -13.93477 -13.60039 -13.48105 -13.13194 -12.88854 -12.78903 -12.75769 -12.29809 -11.93691 -11.63582 -11.41647 -11.17378 -11.08647 -10.79568 -10.71234 -10.39921 -10.06947 -9.78767 -9.47727 -9.24149 -9.08312 -8.83074 -8.53823 -7.60905 -7.43153 -6.08956 -4.11173 1.00886 1.26210 1.29977 1.42517 2.71100 3.27716 3.35245 3.40240 3.70011 3.73654 4.39092 4.51392 4.69680 4.80396 4.85594 4.93758 4.98453 5.04792 5.05096 5.16297 5.26634 5.27293 5.30930 5.40291 5.43453 5.51254 5.55910 5.62676 5.84968 5.93302 6.00365 6.07690 6.14512 6.30771 6.36867 6.46799 6.55976 6.69611 7.12929 7.16082 7.31476 7.34403 7.70660 7.98239 8.04080 8.26235 8.49285 8.97826 9.54079 11.02098 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.036747 B = 0.002423 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.775733 B =11551.434255 C =12003.395971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.578 5.578 3 C 0.220 3.780 4 C -0.180 4.180 5 C -0.075 4.075 6 C -0.177 4.177 7 C -0.077 4.077 8 C -0.191 4.191 9 C 0.338 3.662 10 C -0.159 4.159 11 C -0.067 4.067 12 C -0.112 4.112 13 C 0.097 3.903 14 N -0.683 5.683 15 C 0.193 3.807 16 C -0.515 4.515 17 H 0.063 0.937 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.130 3.870 25 N -0.489 5.489 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.033 0.967 37 H 0.079 0.921 38 H 0.330 0.670 39 H -0.012 1.012 40 H 0.030 0.970 41 H 0.261 0.739 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.000 25.457 2.582 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.288 5.288 3 C 0.120 3.880 4 C -0.202 4.202 5 C -0.094 4.094 6 C -0.196 4.196 7 C -0.096 4.096 8 C -0.213 4.213 9 C 0.112 3.888 10 C -0.181 4.181 11 C -0.094 4.094 12 C -0.114 4.114 13 C -0.033 4.033 14 N -0.314 5.314 15 C 0.067 3.933 16 C -0.553 4.553 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.727 3.273 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.211 1.211 24 C -0.028 4.028 25 N -0.199 5.199 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.146 0.854 39 H 0.006 0.994 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.439 25.523 1.101 25.929 hybrid contribution 0.118 -1.365 1.653 2.147 sum -4.321 24.158 2.753 24.695 Atomic orbital electron populations 1.21686 0.77937 1.03185 1.01400 1.43413 1.04852 1.00497 1.80022 1.17803 0.91181 0.84828 0.94178 1.20691 0.92368 0.98712 1.08464 1.20899 0.99530 0.91866 0.97083 1.20926 0.94409 0.97796 1.06519 1.20868 0.94227 0.97049 0.97420 1.20649 0.99767 0.90916 1.09969 1.17875 0.94801 0.87628 0.88535 1.22082 1.00410 0.96917 0.98681 1.21487 0.95772 0.93784 0.98341 1.21132 0.98912 0.97617 0.93752 1.20836 0.93457 0.87458 1.01593 1.60779 1.24011 1.02519 1.44087 1.19604 0.93607 0.83805 0.96291 1.21195 0.93927 0.90258 1.49965 0.91892 1.24993 0.95374 0.98949 0.95274 1.69966 1.13916 1.19267 1.50497 0.86415 0.81435 0.81810 0.77594 1.19657 1.20932 1.21063 1.22517 0.92163 0.89453 0.98710 1.67430 1.13103 1.09647 1.29710 0.92830 0.90925 0.91134 0.86605 0.86201 0.86484 0.86160 0.85894 0.85008 0.84568 0.94909 0.90275 0.85401 0.99404 0.95163 0.92890 0.82154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.94 10.05 59.85 0.60 1.54 16 2 N -0.58 -6.97 3.10 -120.96 -0.37 -7.35 16 3 C 0.22 2.60 6.52 -83.74 -0.55 2.06 16 4 C -0.18 -2.17 9.31 -39.38 -0.37 -2.54 16 5 C -0.08 -0.77 10.04 -39.61 -0.40 -1.17 16 6 C -0.18 -1.62 10.04 -39.54 -0.40 -2.02 16 7 C -0.08 -0.69 10.04 -39.61 -0.40 -1.08 16 8 C -0.19 -1.89 9.16 -39.38 -0.36 -2.25 16 9 C 0.34 4.57 4.49 -154.93 -0.70 3.88 16 10 C -0.16 -1.95 10.02 -39.23 -0.39 -2.34 16 11 C -0.07 -0.85 9.85 -39.32 -0.39 -1.24 16 12 C -0.11 -1.61 5.41 -104.45 -0.57 -2.17 16 13 C 0.10 1.59 5.83 -4.98 -0.03 1.56 16 14 N -0.68 -14.02 6.48 -116.34 -0.75 -14.77 16 15 C 0.19 4.90 5.44 -4.97 -0.03 4.88 16 16 C -0.51 -14.34 9.32 -34.44 -0.32 -14.66 16 17 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 20 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.13 1.90 10.85 -17.57 -0.19 1.71 16 25 N -0.49 -7.35 10.40 -12.41 -0.13 -7.48 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.56 6.45 -51.93 -0.33 0.22 16 28 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 29 H 0.12 1.52 7.00 -52.49 -0.37 1.15 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.12 0.98 6.31 -52.49 -0.33 0.65 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.03 0.53 8.09 -51.93 -0.42 0.11 16 37 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 38 H 0.33 6.52 8.71 -39.29 -0.34 6.18 16 39 H -0.01 -0.32 8.14 -51.93 -0.42 -0.74 16 40 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.16 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 357.54 15.07 5.39 5.39 Total: -1.00 -31.19 357.54 -10.71 -41.90 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.98 Total: 3.92 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -4.57 Total: -12.39 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.52 Total: -55.27 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.19 -10.71 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437139708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.817 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds