Wall clock time and date at job start Fri Apr 10 2020 20:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39769 * 119.99711 * 2 1 4 4 C 1.38915 * 120.06918 * 185.28338 * 3 2 1 5 5 C 1.38104 * 119.91990 * 179.74550 * 4 3 2 6 6 C 1.38288 * 120.07300 * 0.53392 * 5 4 3 7 7 C 1.38292 * 120.15294 * 359.73869 * 6 5 4 8 8 C 1.38096 * 120.07254 * 359.97438 * 7 6 5 9 9 C 1.39079 * 120.00033 * 179.97438 * 2 1 3 10 10 C 1.39133 * 119.70974 * 265.11826 * 9 2 1 11 11 C 1.38300 * 119.10016 * 180.02562 * 10 9 2 12 12 C 1.38892 * 118.50328 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.33640 * 179.97438 * 12 11 10 14 14 N 1.46897 * 109.47238 * 90.00267 * 13 12 11 15 15 C 1.46904 * 111.00200 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47036 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00061 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99800 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99777 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99872 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47297 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46967 * 120.00400 * 20 18 16 23 23 H 1.48503 * 109.47482 * 240.00205 * 20 18 16 24 24 C 1.38039 * 119.32598 * 0.25724 * 12 11 10 25 25 N 1.31955 * 120.85938 * 359.47754 * 24 12 11 26 26 H 1.08991 * 109.47028 * 270.00364 * 1 2 3 27 27 H 1.09006 * 109.47070 * 30.00143 * 1 2 3 28 28 H 1.08996 * 109.47043 * 150.00127 * 1 2 3 29 29 H 1.07993 * 120.04206 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.96635 * 180.29138 * 5 4 3 31 31 H 1.08007 * 119.92583 * 179.72413 * 6 5 4 32 32 H 1.08000 * 119.96311 * 180.02562 * 7 6 5 33 33 H 1.08001 * 120.03993 * 179.97438 * 8 7 6 34 34 H 1.07996 * 120.45245 * 0.02562 * 10 9 2 35 35 H 1.07999 * 120.75375 * 179.97438 * 11 10 9 36 36 H 1.09004 * 109.47171 * 330.00328 * 13 12 11 37 37 H 1.09003 * 109.47283 * 210.00625 * 13 12 11 38 38 H 1.00904 * 110.99752 * 303.95084 * 14 13 12 39 39 H 1.09000 * 109.47075 * 59.99464 * 15 14 13 40 40 H 1.09001 * 109.46499 * 299.99746 * 15 14 13 41 41 H 0.97001 * 120.00083 * 180.02562 * 19 18 16 42 42 H 1.08003 * 119.57032 * 179.72134 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1638 1.2105 0.0000 4 6 3.5485 1.2148 -0.1107 5 6 4.2355 2.4128 -0.1157 6 6 3.5473 3.6067 0.0005 7 6 2.1693 3.6057 0.1166 8 6 1.4757 2.4116 0.1163 9 6 2.1604 -1.2045 0.0005 10 6 2.5943 -1.7497 1.2048 11 6 3.2851 -2.9477 1.1907 12 6 3.5195 -3.5632 -0.0322 13 6 4.2686 -4.8692 -0.0957 14 7 3.3176 -5.9845 0.0024 15 6 4.0138 -7.2768 -0.0555 16 6 3.0079 -8.3943 0.0472 17 1 1.9567 -8.1672 0.1460 18 6 3.4297 -9.7066 0.0149 19 7 4.7099 -9.9830 -0.1050 20 14 2.1831 -11.0917 0.1429 21 1 0.8186 -10.5196 0.2694 22 1 2.2543 -11.9360 -1.0768 23 1 2.4852 -11.9210 1.3372 24 6 3.0645 -2.9634 -1.1892 25 7 2.4034 -1.8223 -1.1452 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 4.0870 0.2826 -0.1965 30 1 5.3116 2.4173 -0.2064 31 1 4.0873 4.5421 0.0008 32 1 1.6349 4.5399 0.2067 33 1 0.3995 2.4114 0.2074 34 1 2.3943 -1.2443 2.1380 35 1 3.6345 -3.3946 2.1097 36 1 4.9772 -4.9223 0.7309 37 1 4.8076 -4.9334 -1.0409 38 1 2.7601 -5.9117 0.8403 39 1 4.7204 -7.3462 0.7715 40 1 4.5512 -7.3578 -1.0004 41 1 5.0067 -10.9062 -0.1280 42 1 3.2486 -3.4364 -2.1426 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000437139708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:33:01 Heat of formation + Delta-G solvation = 59.988817 kcal Electronic energy + Delta-G solvation = -22244.756985 eV Core-core repulsion = 18996.036475 eV Total energy + Delta-G solvation = -3248.720510 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.154 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.71079 -40.13877 -37.71337 -36.70242 -34.76409 -33.41307 -32.38552 -31.70550 -30.61428 -29.03067 -27.39639 -25.67854 -24.63024 -23.78088 -23.28676 -22.81815 -21.73520 -19.04695 -18.68265 -17.87014 -17.78982 -16.93146 -16.54631 -16.39058 -15.82663 -15.63023 -15.41828 -15.19034 -14.95691 -14.78638 -14.51514 -14.39601 -14.09385 -14.05527 -13.61149 -13.50859 -13.31063 -13.03105 -12.80262 -12.66702 -12.41549 -12.31436 -12.01627 -11.82192 -11.37042 -11.19096 -10.88220 -10.68206 -10.47862 -9.95272 -9.83687 -9.15623 -8.43195 -8.23701 -6.34386 -0.06454 0.23060 0.52340 0.65668 1.40723 1.41833 1.55227 1.85738 2.39056 2.61968 2.97128 3.10029 3.50836 3.64394 3.82893 3.88483 3.96210 4.02562 4.07072 4.11323 4.27503 4.36757 4.49015 4.58746 4.61969 4.64141 4.70011 4.77082 4.79746 4.84393 4.95382 5.06962 5.14106 5.23533 5.26786 5.33252 5.52981 5.59206 5.60334 5.73077 5.96038 5.99897 6.33808 6.39104 6.46201 6.66626 6.86238 6.92057 7.36413 8.87803 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.036747 B = 0.002423 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.775733 B =11551.434255 C =12003.395971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.587 5.587 3 C 0.200 3.800 4 C -0.203 4.203 5 C -0.084 4.084 6 C -0.178 4.178 7 C -0.076 4.076 8 C -0.193 4.193 9 C 0.338 3.662 10 C -0.155 4.155 11 C -0.060 4.060 12 C -0.121 4.121 13 C 0.103 3.897 14 N -0.684 5.684 15 C 0.208 3.792 16 C -0.535 4.535 17 H 0.063 0.937 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.972 3.028 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.277 1.277 24 C 0.122 3.878 25 N -0.512 5.512 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.335 0.665 39 H -0.033 1.033 40 H 0.004 0.996 41 H 0.265 0.735 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.503 27.224 3.561 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.297 5.297 3 C 0.101 3.899 4 C -0.226 4.226 5 C -0.103 4.103 6 C -0.197 4.197 7 C -0.095 4.095 8 C -0.215 4.215 9 C 0.112 3.888 10 C -0.177 4.177 11 C -0.087 4.087 12 C -0.124 4.124 13 C -0.027 4.027 14 N -0.314 5.314 15 C 0.080 3.920 16 C -0.573 4.573 17 H 0.081 0.919 18 C -0.197 4.197 19 N -0.573 5.573 20 Si 0.796 3.204 21 H -0.188 1.188 22 H -0.205 1.205 23 H -0.202 1.202 24 C -0.036 4.036 25 N -0.223 5.223 26 H 0.089 0.911 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.150 0.850 31 H 0.159 0.841 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.152 0.848 39 H -0.015 1.015 40 H 0.022 0.978 41 H 0.074 0.926 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.951 27.324 2.082 28.042 hybrid contribution 0.606 -1.736 1.342 2.276 sum -5.345 25.589 3.424 26.364 Atomic orbital electron populations 1.21829 0.76579 1.03447 1.02566 1.43592 1.05668 1.00032 1.80450 1.18031 0.91251 0.85384 0.95243 1.20699 0.92882 0.98642 1.10355 1.21129 1.00364 0.91825 0.96969 1.21270 0.94907 0.98215 1.05350 1.21273 0.94323 0.97895 0.95982 1.20935 1.00829 0.90453 1.09244 1.18180 0.94152 0.87971 0.88525 1.22270 0.99680 0.96613 0.99150 1.21697 0.94936 0.93690 0.98338 1.20863 1.00018 0.96915 0.94589 1.20766 0.93077 0.87092 1.01722 1.60612 1.24611 1.01722 1.44477 1.19239 0.92831 0.85928 0.93968 1.21549 0.94296 0.91394 1.50043 0.91927 1.25923 0.97361 1.01693 0.94686 1.70082 1.15880 1.20074 1.51215 0.85300 0.78996 0.78313 0.77772 1.18828 1.20467 1.20231 1.22561 0.92345 0.89674 0.98972 1.67454 1.13945 1.10006 1.30869 0.91145 0.89245 0.92312 0.88634 0.85025 0.84141 0.83231 0.83998 0.82981 0.82655 0.94180 0.90573 0.84772 1.01517 0.97763 0.92582 0.82141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.67 10.05 127.77 1.28 2.96 16 2 N -0.59 -13.62 3.10 -536.60 -1.66 -15.29 16 3 C 0.20 4.53 6.52 38.20 0.25 4.78 16 4 C -0.20 -4.88 9.31 22.40 0.21 -4.67 16 5 C -0.08 -1.64 10.04 22.25 0.22 -1.42 16 6 C -0.18 -2.83 10.04 22.29 0.22 -2.60 16 7 C -0.08 -1.13 10.04 22.25 0.22 -0.91 16 8 C -0.19 -3.37 9.16 22.40 0.21 -3.16 16 9 C 0.34 9.05 4.49 133.03 0.60 9.64 16 10 C -0.16 -3.66 10.02 22.50 0.23 -3.43 16 11 C -0.06 -1.47 9.85 22.44 0.22 -1.25 16 12 C -0.12 -3.50 5.41 -19.76 -0.11 -3.61 16 13 C 0.10 3.44 5.83 85.56 0.50 3.94 16 14 N -0.68 -28.46 6.48 -521.98 -3.38 -31.84 16 15 C 0.21 10.85 5.44 85.56 0.47 11.32 16 16 C -0.53 -30.13 9.32 25.60 0.24 -29.89 16 17 H 0.06 3.46 7.81 -2.91 -0.02 3.43 16 18 C 0.00 0.10 5.46 84.66 0.46 0.56 16 19 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 20 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 C 0.12 3.66 10.85 84.63 0.92 4.57 16 25 N -0.51 -15.61 10.40 -193.19 -2.01 -17.62 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 1.20 6.45 -2.38 -0.02 1.18 16 28 H 0.06 1.14 8.05 -2.39 -0.02 1.12 16 29 H 0.10 2.60 7.00 -2.91 -0.02 2.58 16 30 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 31 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 32 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 33 H 0.14 1.84 6.31 -2.91 -0.02 1.82 16 34 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.04 1.29 8.09 -2.38 -0.02 1.27 16 37 H 0.08 2.57 8.09 -2.39 -0.02 2.55 16 38 H 0.34 13.28 8.71 -89.69 -0.78 12.50 16 39 H -0.03 -1.82 8.14 -2.39 -0.02 -1.84 16 40 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 42 H 0.16 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -67.48 357.54 1.63 -65.85 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.23 Total: 21.41 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 6.14 Total: -13.16 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -6.77 Total: -120.10 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -67.48 1.63 -65.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437139708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.841 kcal (2) G-P(sol) polarization free energy of solvation -67.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds