Wall clock time and date at job start Fri Apr 10 2020 20:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47291 * 179.97438 * 12 11 10 14 14 O 1.21288 * 120.00038 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00369 * 179.97438 * 13 12 11 16 16 C 1.47017 * 125.64800 * 359.68971 * 15 13 12 17 17 C 1.54317 * 107.27803 * 180.96857 * 16 15 13 18 18 C 1.55150 * 102.86132 * 22.52713 * 17 16 15 19 19 H 1.09001 * 111.00958 * 82.37842 * 18 17 16 20 20 C 1.52995 * 111.03710 * 206.21493 * 18 17 16 21 21 O 1.43750 * 109.63427 * 51.12096 * 20 18 17 22 22 C 1.44578 * 104.92426 * 215.70948 * 21 20 18 23 23 C 1.54916 * 101.63588 * 36.26819 * 22 21 20 24 24 O 1.43368 * 109.63144 * 291.90576 * 20 18 17 25 25 C 1.47423 * 125.64938 * 180.02562 * 15 13 12 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 32 32 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 33 33 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 34 34 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 35 35 H 1.09004 * 109.88204 * 300.51498 * 16 15 13 36 36 H 1.09005 * 109.88068 * 61.67886 * 16 15 13 37 37 H 1.09000 * 110.92402 * 264.11405 * 17 16 15 38 38 H 1.09002 * 110.58898 * 140.78962 * 17 16 15 39 39 H 1.09010 * 109.63262 * 171.51537 * 20 18 17 40 40 H 1.09000 * 111.08906 * 278.16053 * 22 21 20 41 41 H 1.09005 * 110.98312 * 154.32991 * 22 21 20 42 42 H 1.09000 * 110.69763 * 205.96293 * 23 22 21 43 43 H 1.09002 * 110.69830 * 82.75198 * 23 22 21 44 44 H 1.09001 * 110.36616 * 274.67341 * 25 15 13 45 45 H 1.09002 * 110.36949 * 36.99184 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 6 2.4743 -6.1501 0.0005 13 6 1.7208 -7.4551 0.0005 14 8 0.5079 -7.4551 0.0005 15 7 2.3946 -8.6224 0.0005 16 6 3.8576 -8.7672 -0.0059 17 6 4.1685 -10.2785 -0.0282 18 6 2.8678 -10.8901 -0.6125 19 1 2.8621 -10.8297 -1.7008 20 6 2.6824 -12.3352 -0.1455 21 8 2.8100 -12.4007 1.2848 22 6 3.4628 -13.6647 1.5429 23 6 4.4391 -13.7626 0.3441 24 8 3.6920 -13.1651 -0.7348 25 6 1.7866 -9.9654 0.0000 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.8531 -5.0451 0.8897 32 1 0.8537 -5.0446 -0.8902 33 1 3.1015 -6.0923 -0.8891 34 1 3.1004 -6.0924 0.8909 35 1 4.2736 -8.2881 -0.8923 36 1 4.2786 -8.3173 0.8933 37 1 4.3522 -10.6530 0.9788 38 1 5.0182 -10.4855 -0.6788 39 1 1.6959 -12.6922 -0.4418 40 1 2.7462 -14.4859 1.5305 41 1 4.0061 -13.6377 2.4875 42 1 4.6721 -14.8038 0.1211 43 1 5.3496 -13.1968 0.5416 44 1 1.5540 -10.2769 1.0183 45 1 0.8869 -9.9743 -0.6152 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927996708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:33:01 Heat of formation + Delta-G solvation = -166.698519 kcal Electronic energy + Delta-G solvation = -23761.991355 eV Core-core repulsion = 20163.839274 eV Total energy + Delta-G solvation = -3598.152081 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.72488 -40.82723 -38.46799 -36.62274 -36.00899 -34.63347 -33.53007 -31.49338 -30.93172 -29.71931 -27.67093 -25.89115 -24.44277 -23.98086 -23.50969 -21.76003 -21.39897 -20.18875 -18.42493 -18.23197 -18.08537 -17.90101 -17.31373 -16.92118 -16.57197 -16.27394 -15.96836 -15.46912 -15.20585 -14.58700 -14.55065 -14.44186 -14.27421 -14.02717 -13.81128 -13.69001 -13.50158 -13.33456 -13.25791 -12.78724 -12.61208 -12.55980 -12.36978 -12.16486 -12.15796 -11.99996 -11.72249 -11.38220 -11.35929 -11.18487 -11.12960 -10.85509 -10.57914 -10.53986 -9.71301 -8.17933 -6.30362 1.40554 1.44984 1.52819 1.57642 1.90010 2.42535 2.46914 2.91774 3.14387 3.33378 3.57698 3.69651 3.76787 3.87785 4.01620 4.06659 4.10924 4.20736 4.26617 4.31462 4.37896 4.48540 4.57563 4.63772 4.65819 4.68315 4.76121 4.81832 4.84945 4.85499 4.90716 5.01433 5.04659 5.17344 5.20920 5.29853 5.34653 5.37311 5.56309 5.77746 5.87980 6.05986 6.25484 6.44145 6.87698 7.11274 7.39019 8.94117 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.048708 B = 0.002071 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.715523 B =13519.604186 C =13797.728170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.094 4.094 11 C -0.096 4.096 12 C -0.121 4.121 13 C 0.523 3.477 14 O -0.590 6.590 15 N -0.621 5.621 16 C 0.093 3.907 17 C -0.111 4.111 18 C -0.110 4.110 19 H 0.105 0.895 20 C 0.247 3.753 21 O -0.391 6.391 22 C 0.011 3.989 23 C 0.017 3.983 24 O -0.396 6.396 25 C 0.113 3.887 26 H 0.263 0.737 27 H -0.016 1.016 28 H -0.016 1.016 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.037 -32.836 1.250 36.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.132 4.132 11 C -0.134 4.134 12 C -0.160 4.160 13 C 0.313 3.687 14 O -0.471 6.471 15 N -0.355 5.355 16 C -0.029 4.029 17 C -0.149 4.149 18 C -0.129 4.129 19 H 0.123 0.877 20 C 0.151 3.849 21 O -0.312 6.312 22 C -0.065 4.065 23 C -0.059 4.059 24 O -0.317 6.317 25 C -0.010 4.010 26 H 0.071 0.929 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.146 0.854 42 H 0.138 0.862 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.193 -32.524 1.191 35.506 hybrid contribution -0.518 0.882 0.067 1.025 sum 13.675 -31.642 1.258 34.493 Atomic orbital electron populations 1.70137 1.08086 1.27806 1.51797 1.26128 0.95826 1.03833 0.94797 0.85407 0.78133 0.77568 0.79359 1.18875 1.21092 1.18872 1.21719 0.93758 0.92156 1.50350 0.91496 1.19057 0.94696 0.93821 0.94308 1.21439 0.97808 0.92549 1.01383 1.21256 0.97461 0.93658 1.01012 1.21638 0.98852 0.89097 1.06403 1.20968 0.87301 0.85646 0.74744 1.90690 1.16331 1.87869 1.52204 1.48598 1.08928 1.05046 1.72947 1.22354 0.78520 0.98349 1.03628 1.22583 0.97043 0.92291 1.02936 1.22776 0.96073 0.92561 1.01504 0.87685 1.23770 0.92492 0.90211 0.78402 1.89210 1.80842 1.39510 1.21621 1.24604 0.94994 0.85890 1.00970 1.24443 0.95433 1.00935 0.85091 1.88890 1.47810 1.63257 1.31765 1.22086 0.96398 0.81528 1.01005 0.92867 0.99730 0.99748 0.92003 0.91962 0.93942 0.93854 0.86474 0.86611 0.89445 0.89737 0.89656 0.88020 0.89311 0.89751 0.85398 0.86247 0.89571 0.91398 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.83 13.29 21.45 0.28 -59.54 16 2 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 3 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.54 -31.88 9.11 25.60 0.23 -31.65 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.02 1.03 4.97 29.85 0.15 1.18 16 10 C -0.09 -3.97 5.15 30.59 0.16 -3.81 16 11 C -0.10 -3.65 4.50 30.59 0.14 -3.52 16 12 C -0.12 -3.30 4.89 29.85 0.15 -3.15 16 13 C 0.52 16.21 7.85 87.66 0.69 16.89 16 14 O -0.59 -24.29 16.24 -3.05 -0.05 -24.34 16 15 N -0.62 -14.44 3.33 -811.84 -2.70 -17.14 16 16 C 0.09 1.35 6.48 86.73 0.56 1.91 16 17 C -0.11 -1.29 6.26 31.78 0.20 -1.09 16 18 C -0.11 -1.62 3.18 -9.41 -0.03 -1.65 16 19 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 20 C 0.25 3.38 3.77 71.98 0.27 3.65 16 21 O -0.39 -5.49 9.47 -126.20 -1.20 -6.69 16 22 C 0.01 0.07 7.95 72.64 0.58 0.65 16 23 C 0.02 0.10 8.07 72.64 0.59 0.69 16 24 O -0.40 -5.15 11.11 -126.20 -1.40 -6.55 16 25 C 0.11 2.40 6.33 86.85 0.55 2.95 16 26 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 27 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 28 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 32 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 33 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.08 1.01 7.09 -2.39 -0.02 1.00 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.13 0.35 8.14 -2.38 -0.02 0.33 16 42 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.07 1.55 7.45 -2.39 -0.02 1.53 16 45 H 0.06 1.52 8.04 -2.39 -0.02 1.51 16 Total: -1.00 -79.83 365.25 2.60 -77.23 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 0.94 Total: 6.72 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 4.69 Total: -17.00 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -2.42 Total: -76.68 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -2.65 Total: -37.58 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -79.83 2.60 -77.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927996708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.468 kcal (2) G-P(sol) polarization free energy of solvation -79.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds