Wall clock time and date at job start Fri Apr 10 2020 20:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38218 * 120.35174 * 2 1 4 4 C 1.39701 * 118.49524 * 180.29106 * 3 2 1 5 5 N 1.38551 * 120.48804 * 179.73198 * 4 3 2 6 6 C 1.46505 * 119.99591 * 359.72478 * 5 4 3 7 7 C 1.52997 * 109.47212 * 179.97438 * 6 5 4 8 8 C 1.52992 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47592 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00057 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00356 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99989 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00117 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47306 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47019 * 120.00329 * 13 11 9 16 16 H 1.48498 * 109.47326 * 240.00104 * 13 11 9 17 17 N 1.32847 * 119.03067 * 359.45953 * 4 3 2 18 18 C 1.32563 * 120.61337 * 0.27729 * 17 4 3 19 19 C 1.48316 * 119.18529 * 179.97438 * 18 17 4 20 20 C 1.39366 * 120.12481 * 359.72146 * 19 18 17 21 21 C 1.38010 * 119.87406 * 179.74455 * 20 19 18 22 22 C 1.38327 * 120.11997 * 0.53296 * 21 20 19 23 23 C 1.38323 * 120.25543 * 359.72323 * 22 21 20 24 24 C 1.38011 * 120.12355 * 0.02562 * 23 22 21 25 25 N 1.32395 * 120.34952 * 179.74759 * 2 1 3 26 26 H 1.09010 * 109.46593 * 270.25494 * 1 2 3 27 27 H 1.08994 * 109.47693 * 30.25184 * 1 2 3 28 28 H 1.08999 * 109.47566 * 150.26066 * 1 2 3 29 29 H 1.07998 * 120.75517 * 0.04381 * 3 2 1 30 30 H 0.96996 * 120.00802 * 179.71932 * 5 4 3 31 31 H 1.09002 * 109.47068 * 299.99875 * 6 5 4 32 32 H 1.09001 * 109.47372 * 59.99963 * 6 5 4 33 33 H 1.09002 * 109.47153 * 300.00008 * 7 6 5 34 34 H 1.08998 * 109.47533 * 59.99637 * 7 6 5 35 35 H 1.09002 * 109.47103 * 300.00247 * 8 7 6 36 36 H 1.09001 * 109.47066 * 60.00169 * 8 7 6 37 37 H 0.96996 * 119.99885 * 179.97438 * 12 11 9 38 38 H 1.08001 * 120.06643 * 359.97438 * 20 19 18 39 39 H 1.07994 * 119.94203 * 180.25234 * 21 20 19 40 40 H 1.08009 * 119.87200 * 179.69532 * 22 21 20 41 41 H 1.08002 * 119.94115 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.06248 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2054 1.1927 0.0000 4 6 3.6017 1.1475 -0.0062 5 7 4.3429 2.3180 -0.0121 6 6 3.6628 3.6156 -0.0178 7 6 4.7036 4.7370 -0.0229 8 6 3.9935 6.0921 -0.0296 9 6 5.0186 7.1966 -0.0339 10 1 6.0716 6.9561 -0.0326 11 6 4.6125 8.5142 -0.0408 12 7 3.3304 8.8071 -0.0429 13 14 5.8834 9.8833 -0.0455 14 1 7.2463 9.2936 -0.0414 15 1 5.7087 10.7166 -1.2622 16 1 5.7054 10.7280 1.1628 17 7 4.2084 -0.0343 -0.0010 18 6 3.5018 -1.1559 0.0045 19 6 4.2119 -2.4580 0.0097 20 6 5.6051 -2.4951 0.0030 21 6 6.2605 -3.7096 0.0132 22 6 5.5372 -4.8887 0.0190 23 6 4.1543 -4.8580 0.0203 24 6 3.4883 -3.6492 0.0154 25 7 2.1760 -1.1425 0.0050 26 1 -0.3633 0.0046 1.0278 27 1 -0.3634 0.8876 -0.5177 28 1 -0.3634 -0.8923 -0.5098 29 1 1.6836 2.1383 0.0007 30 1 5.3121 2.2785 -0.0123 31 1 3.0386 3.6947 -0.9079 32 1 3.0394 3.7031 0.8721 33 1 5.3275 4.6577 0.8674 34 1 5.3274 4.6498 -0.9125 35 1 3.3699 6.1711 -0.9201 36 1 3.3695 6.1796 0.8599 37 1 3.0447 9.7340 -0.0473 38 1 6.1707 -1.5751 -0.0065 39 1 7.3400 -3.7395 0.0121 40 1 6.0543 -5.8369 0.0220 41 1 3.5947 -5.7817 0.0245 42 1 2.4086 -3.6264 0.0169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:33:15 Heat of formation + Delta-G solvation = 54.000849 kcal Electronic energy + Delta-G solvation = -21909.139060 eV Core-core repulsion = 18660.158893 eV Total energy + Delta-G solvation = -3248.980167 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 297.154 amu Computer time = 6.86 seconds Orbital eigenvalues (eV) -40.97562 -39.02566 -36.87809 -34.42788 -33.84741 -32.40793 -31.15420 -30.80382 -30.02866 -28.11448 -26.71455 -24.68647 -23.31108 -22.71452 -21.64599 -21.21133 -20.44828 -17.91531 -17.44260 -16.44553 -16.25983 -15.60402 -15.43723 -15.10213 -14.80020 -14.65770 -14.55239 -14.24026 -13.98698 -13.53925 -13.33613 -13.06427 -12.89690 -12.46250 -12.34626 -12.18781 -11.91098 -11.50887 -11.22137 -11.09602 -10.92830 -10.80528 -10.61770 -10.59930 -10.00971 -9.88230 -9.59634 -9.21280 -9.14002 -9.09102 -8.74022 -8.44651 -7.97604 -6.09431 -4.12327 0.46860 1.26922 1.39639 1.72795 3.07675 3.25723 3.33667 3.37510 3.53628 3.83364 4.12503 4.26879 4.38809 4.74864 4.79233 4.85750 4.95502 5.09685 5.26956 5.28054 5.32908 5.41538 5.43942 5.44786 5.50229 5.55019 5.72254 5.75863 5.81257 5.92856 5.93476 6.15658 6.32067 6.32404 6.44039 6.44143 6.57257 6.76273 6.83709 6.91569 7.36427 7.53316 7.64440 7.69053 7.88730 8.29637 8.32929 8.94135 9.52523 11.01889 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.023858 B = 0.002421 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.339605 B =11564.668353 C =12706.953888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.202 3.798 3 C -0.295 4.295 4 C 0.445 3.555 5 N -0.704 5.704 6 C 0.120 3.880 7 C -0.121 4.121 8 C 0.025 3.975 9 C -0.522 4.522 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 N -0.580 5.580 18 C 0.398 3.602 19 C -0.040 4.040 20 C -0.071 4.071 21 C -0.133 4.133 22 C -0.105 4.105 23 C -0.134 4.134 24 C -0.071 4.071 25 N -0.561 5.561 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.407 0.593 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.261 0.739 38 H 0.136 0.864 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 -25.103 0.126 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.059 3.941 3 C -0.324 4.324 4 C 0.200 3.800 5 N -0.334 5.334 6 C -0.003 4.003 7 C -0.159 4.159 8 C -0.013 4.013 9 C -0.561 4.561 10 H 0.075 0.925 11 C -0.145 4.145 12 N -0.533 5.533 13 Si 0.721 3.279 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.305 5.305 18 C 0.132 3.868 19 C -0.042 4.042 20 C -0.091 4.091 21 C -0.151 4.151 22 C -0.124 4.124 23 C -0.152 4.152 24 C -0.091 4.091 25 N -0.281 5.281 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.162 0.838 30 H 0.242 0.758 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.154 0.846 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.358 -25.499 0.126 25.536 hybrid contribution 0.635 1.823 0.005 1.930 sum -0.722 -23.676 0.131 23.688 Atomic orbital electron populations 1.20736 0.88085 1.03776 1.03450 1.21286 0.97035 0.87446 0.88291 1.22053 0.93712 1.00940 1.15664 1.18519 0.88575 0.86425 0.86458 1.44906 1.09166 1.02433 1.76873 1.21819 0.96786 0.80311 1.01385 1.21882 0.97321 0.95340 1.01321 1.19032 0.95843 0.88796 0.97609 1.21223 0.93038 0.90902 1.50913 0.92550 1.25027 0.95289 0.98969 0.95176 1.69964 1.14060 1.18671 1.50614 0.86515 0.81692 0.82028 0.77646 1.19728 1.20954 1.20948 1.67788 1.41016 0.97271 1.24418 1.20817 0.86009 0.90653 0.89363 1.18111 0.92674 0.89241 1.04213 1.21360 0.93258 0.98711 0.95738 1.21121 1.00108 0.92189 1.01707 1.21304 0.94341 0.98281 0.98443 1.21106 0.94492 0.97737 1.01896 1.21324 1.00886 0.90885 0.95959 1.68118 1.08455 1.29975 1.21575 0.89892 0.90182 0.90194 0.83850 0.75759 0.91756 0.91762 0.92462 0.92467 0.96243 0.96246 0.92935 0.84605 0.85673 0.86001 0.85701 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.21 36.01 0.37 -0.58 16 2 C 0.20 2.66 6.81 -82.36 -0.56 2.10 16 3 C -0.30 -4.14 9.07 -39.04 -0.35 -4.49 16 4 C 0.45 6.83 7.70 -154.86 -1.19 5.63 16 5 N -0.70 -10.35 5.71 -60.28 -0.34 -10.69 16 6 C 0.12 1.88 4.92 -4.04 -0.02 1.86 16 7 C -0.12 -2.25 5.27 -26.74 -0.14 -2.40 16 8 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 9 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 10 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 13 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 N -0.58 -9.04 9.48 -10.38 -0.10 -9.14 16 18 C 0.40 5.96 7.56 -156.97 -1.19 4.77 16 19 C -0.04 -0.52 5.88 -104.91 -0.62 -1.14 16 20 C -0.07 -0.82 9.56 -39.25 -0.38 -1.20 16 21 C -0.13 -1.23 10.03 -39.63 -0.40 -1.63 16 22 C -0.10 -0.87 10.04 -39.52 -0.40 -1.27 16 23 C -0.13 -1.18 10.03 -39.63 -0.40 -1.58 16 24 C -0.07 -0.78 9.56 -39.24 -0.38 -1.15 16 25 N -0.56 -8.06 9.38 -7.48 -0.07 -8.13 16 26 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.14 1.82 6.85 -52.49 -0.36 1.46 16 30 H 0.41 5.66 8.60 -40.82 -0.35 5.31 16 31 H 0.06 0.99 7.98 -51.93 -0.41 0.58 16 32 H 0.06 0.99 7.96 -51.93 -0.41 0.58 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.14 1.60 7.51 -52.49 -0.39 1.20 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.14 1.44 7.51 -52.49 -0.39 1.04 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -30.91 358.50 -11.68 -42.59 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.09 Total: 2.87 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -6.20 Total: -13.68 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.22 Total: -53.35 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.91 -11.68 -42.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.592 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.86 seconds