Wall clock time and date at job start Fri Apr 10 2020 20:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.38613 * 119.99937 * 180.02562 * 2 1 3 5 5 N 1.29682 * 124.94999 * 359.71009 * 4 2 1 6 6 C 1.32119 * 116.86662 * 179.81619 * 5 4 2 7 7 C 1.50694 * 122.71284 * 180.22638 * 6 5 4 8 8 N 1.46902 * 109.47495 * 275.27293 * 7 6 5 9 9 C 1.46897 * 110.99835 * 179.97438 * 8 7 6 10 10 C 1.53011 * 109.46836 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46761 * 299.99658 * 10 9 8 12 12 C 1.52997 * 109.47106 * 59.99793 * 10 9 8 13 13 C 1.52999 * 109.46878 * 179.97438 * 10 9 8 14 14 C 1.50701 * 109.46858 * 179.97438 * 13 10 9 15 15 H 1.08002 * 120.00277 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00190 * 179.97438 * 14 13 10 17 17 N 1.31515 * 120.00070 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00273 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46860 * 90.00148 * 18 16 14 20 20 H 1.48503 * 109.47127 * 210.00184 * 18 16 14 21 21 H 1.48499 * 109.47137 * 330.00338 * 18 16 14 22 22 C 1.33327 * 114.57889 * 0.47912 * 6 5 4 23 23 S 1.70966 * 124.94572 * 180.02562 * 4 2 1 24 24 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 25 25 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 26 26 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 27 27 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 29 29 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 30 30 H 1.09002 * 109.46950 * 35.27397 * 7 6 5 31 31 H 1.09002 * 109.47597 * 155.27108 * 7 6 5 32 32 H 1.00903 * 110.99731 * 303.95197 * 8 7 6 33 33 H 1.09000 * 109.47358 * 299.99161 * 9 8 7 34 34 H 1.08997 * 109.47634 * 59.99963 * 9 8 7 35 35 H 1.08997 * 109.47065 * 60.00548 * 11 10 9 36 36 H 1.09000 * 109.46732 * 179.97438 * 11 10 9 37 37 H 1.08997 * 109.47320 * 299.99770 * 11 10 9 38 38 H 1.09002 * 109.47171 * 59.99860 * 12 10 9 39 39 H 1.09000 * 109.47289 * 180.02562 * 12 10 9 40 40 H 1.09004 * 109.47145 * 299.99916 * 12 10 9 41 41 H 1.08994 * 109.47083 * 299.99553 * 13 10 9 42 42 H 1.08997 * 109.47559 * 60.00012 * 13 10 9 43 43 H 0.97000 * 120.00655 * 179.97438 * 17 16 14 44 44 H 1.07999 * 125.95544 * 179.74779 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1580 -1.2004 -0.0005 5 7 1.6090 -2.3753 0.0043 6 6 2.4238 -3.4152 -0.0009 7 6 1.9281 -4.8383 -0.0012 8 7 1.6526 -5.2613 1.3783 9 6 1.1657 -6.6467 1.4168 10 6 0.8910 -7.0506 2.8669 11 6 2.1823 -6.9410 3.6801 12 6 -0.1678 -6.1211 3.4633 13 6 0.3833 -8.4933 2.9069 14 6 0.1133 -8.8913 4.3351 15 1 0.2861 -8.1857 5.1343 16 6 -0.3553 -10.1559 4.6216 17 7 -0.5662 -11.0151 3.6485 18 14 -0.6906 -10.6490 6.3918 19 1 -2.0961 -10.3193 6.7397 20 1 -0.4713 -12.1094 6.5489 21 1 0.2290 -9.9105 7.2941 22 6 3.7203 -3.1039 -0.0004 23 16 3.8613 -1.3478 0.0000 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8900 0.5139 27 1 1.4892 2.0973 0.0005 28 1 2.8242 1.3264 0.8899 29 1 2.8241 1.3265 -0.8900 30 1 1.0138 -4.9044 -0.5910 31 1 2.6882 -5.4878 -0.4354 32 1 2.4685 -5.1481 1.9610 33 1 0.2460 -6.7249 0.8371 34 1 1.9202 -7.3090 0.9923 35 1 2.5436 -5.9130 3.6515 36 1 1.9865 -7.2283 4.7132 37 1 2.9366 -7.6032 3.2552 38 1 -1.0878 -6.1991 2.8838 39 1 -0.3632 -6.4085 4.4964 40 1 0.1935 -5.0931 3.4347 41 1 -0.5367 -8.5709 2.3277 42 1 1.1373 -9.1558 2.4819 43 1 -0.8955 -11.9050 3.8499 44 1 4.5410 -3.8059 -0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080245250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:33:34 Heat of formation + Delta-G solvation = 44.247077 kcal Electronic energy + Delta-G solvation = -21617.126112 eV Core-core repulsion = 18503.166941 eV Total energy + Delta-G solvation = -3113.959171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.92035 -37.66594 -36.88167 -34.15058 -32.16207 -30.11310 -28.61105 -27.16462 -26.49275 -26.27218 -26.11166 -24.29911 -22.27700 -21.70721 -19.64543 -18.38425 -17.61966 -16.47959 -16.17921 -15.86333 -15.31435 -15.17378 -14.77130 -14.37964 -14.19150 -13.51707 -13.40513 -13.07672 -13.01291 -12.91627 -12.78977 -12.44188 -12.28670 -12.25557 -11.94823 -11.63253 -11.12774 -10.92962 -10.81364 -10.71506 -10.43264 -10.23659 -10.15109 -10.07218 -9.61887 -9.56723 -9.21014 -8.95393 -8.78024 -8.27444 -8.02415 -7.73822 -5.92073 -3.91856 0.94811 1.07239 1.72642 2.62491 2.90942 3.36390 3.42683 3.45676 4.31608 4.51347 4.66158 4.77115 4.87130 4.96583 5.16841 5.24041 5.31638 5.39228 5.43773 5.59279 5.65827 5.66561 5.81643 5.86737 6.05137 6.10333 6.30905 6.40370 6.47429 6.58134 6.74587 6.78591 6.85889 6.90177 7.27366 7.28642 7.32997 7.45526 7.72622 7.76828 7.91508 7.96480 8.08671 8.53431 9.13559 9.70665 11.19657 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.029504 B = 0.002681 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.781286 B =10440.415777 C =10745.777348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.592 5.592 3 C 0.092 3.908 4 C 0.315 3.685 5 N -0.527 5.527 6 C 0.130 3.870 7 C 0.131 3.869 8 N -0.677 5.677 9 C 0.071 3.929 10 C -0.057 4.057 11 C -0.129 4.129 12 C -0.115 4.115 13 C 0.033 3.967 14 C -0.505 4.505 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.300 4.300 23 S 0.076 5.924 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.338 0.662 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.053 0.947 40 H 0.042 0.958 41 H 0.015 0.985 42 H 0.013 0.987 43 H 0.258 0.742 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.146 24.076 -9.728 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.312 5.312 3 C -0.051 4.051 4 C -0.055 4.055 5 N -0.252 5.252 6 C -0.002 4.002 7 C -0.001 4.001 8 N -0.309 5.309 9 C -0.057 4.057 10 C -0.058 4.058 11 C -0.186 4.186 12 C -0.172 4.172 13 C -0.004 4.004 14 C -0.543 4.543 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.442 4.442 23 S 0.325 5.675 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.157 0.843 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.034 0.966 42 H 0.031 0.969 43 H 0.068 0.932 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.635 25.010 -9.748 27.907 hybrid contribution 0.286 -1.729 0.732 1.899 sum 7.920 23.280 -9.016 26.192 Atomic orbital electron populations 1.21699 0.77442 1.03398 1.01638 1.45685 1.05815 1.00804 1.78934 1.21792 0.97323 0.84082 1.01878 1.23526 0.92850 0.90014 0.99101 1.66182 1.37379 0.96030 1.25623 1.19796 0.87773 0.95010 0.97573 1.20429 1.00187 0.87229 0.92287 1.60498 1.38404 1.24281 1.07763 1.22132 0.98907 0.85821 0.98886 1.20620 0.95265 0.98627 0.91257 1.21767 0.96910 0.98283 1.01652 1.21587 0.97589 0.97451 1.00616 1.19128 0.95905 0.88290 0.97085 1.21244 1.42677 0.97579 0.92849 0.92314 1.25014 0.96032 0.96847 0.96741 1.69966 1.46514 1.06080 1.31258 0.86669 0.78575 0.77561 0.85642 1.20800 1.21422 1.19963 1.26244 1.00852 0.95962 1.21126 1.83711 1.04490 1.04729 1.74525 0.93102 0.91379 0.89926 0.89424 0.92112 0.92189 0.89565 0.93836 0.84252 0.91399 0.95774 0.94858 0.91755 0.94095 0.94173 0.92821 0.93906 0.96636 0.96888 0.93205 0.81113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.86 10.53 59.85 0.63 1.49 16 2 N -0.59 -5.65 3.38 -191.88 -0.65 -6.30 16 3 C 0.09 0.53 10.02 59.85 0.60 1.13 16 4 C 0.32 3.85 7.74 -87.68 -0.68 3.17 16 5 N -0.53 -7.68 9.80 -11.36 -0.11 -7.79 16 6 C 0.13 1.79 6.25 -84.19 -0.53 1.27 16 7 C 0.13 1.82 6.12 -4.98 -0.03 1.79 16 8 N -0.68 -10.69 5.70 -115.05 -0.66 -11.35 16 9 C 0.07 1.27 4.65 -3.82 -0.02 1.25 16 10 C -0.06 -1.18 0.60 -154.50 -0.09 -1.27 16 11 C -0.13 -2.47 7.89 37.16 0.29 -2.17 16 12 C -0.12 -2.35 8.06 37.16 0.30 -2.05 16 13 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 14 C -0.51 -14.03 7.65 -34.44 -0.26 -14.30 16 15 H 0.06 1.59 5.68 -52.49 -0.30 1.30 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 18 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.30 -3.53 11.08 29.02 0.32 -3.21 16 23 S 0.08 0.79 22.32 -107.50 -2.40 -1.61 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.39 7.92 -51.93 -0.41 -0.02 16 26 H 0.08 0.89 7.61 -51.93 -0.40 0.49 16 27 H 0.09 0.30 7.79 -51.93 -0.40 -0.11 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.04 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.34 5.19 6.76 -39.29 -0.27 4.92 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 36 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 40 H 0.04 0.81 7.60 -51.93 -0.39 0.42 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -31.96 364.51 -9.69 -41.65 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.40 Total: 0.19 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 0.32 Total: -10.71 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.68 Total: -51.88 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.40 Total: -1.61 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.96 -9.69 -41.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080245250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.897 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds