Wall clock time and date at job start Fri Apr 10 2020 20:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00372 * 2 1 4 4 O 1.20828 * 119.99377 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00124 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.46936 * 204.99998 * 5 3 2 7 7 N 1.46497 * 109.47121 * 324.99968 * 5 3 2 8 8 C 1.34779 * 119.99684 * 180.02562 * 7 5 3 9 9 O 1.21277 * 120.00359 * 359.97438 * 8 7 5 10 10 C 1.50705 * 119.99698 * 180.02562 * 8 7 5 11 11 C 1.52999 * 109.46920 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47091 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47091 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47295 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99882 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00218 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99776 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99797 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47451 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46677 * 120.00270 * 18 16 14 21 21 H 1.48498 * 109.46892 * 239.99844 * 18 16 14 22 22 C 1.53003 * 109.46888 * 85.00078 * 5 3 2 23 23 C 1.53001 * 117.51964 * 356.28272 * 22 5 3 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 5 25 25 H 1.09000 * 109.46915 * 59.99741 * 1 2 3 26 26 H 1.08998 * 109.47183 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46791 * 299.99753 * 1 2 3 28 28 H 1.09004 * 109.47051 * 300.00151 * 6 5 3 29 29 H 1.08991 * 109.47188 * 60.00146 * 6 5 3 30 30 H 1.09001 * 109.46725 * 180.02562 * 6 5 3 31 31 H 0.96995 * 120.00063 * 0.02562 * 7 5 3 32 32 H 1.08991 * 109.47102 * 299.99847 * 10 8 7 33 33 H 1.08998 * 109.47188 * 59.99756 * 10 8 7 34 34 H 1.09004 * 109.46823 * 299.99916 * 11 10 8 35 35 H 1.08998 * 109.47344 * 59.99906 * 11 10 8 36 36 H 1.08996 * 109.46845 * 299.99447 * 12 11 10 37 37 H 1.08998 * 109.47172 * 59.99716 * 12 11 10 38 38 H 1.08998 * 109.47151 * 300.00156 * 13 12 11 39 39 H 1.08998 * 109.47344 * 59.99821 * 13 12 11 40 40 H 0.97006 * 119.99946 * 180.02562 * 17 16 14 41 41 H 1.09002 * 115.54973 * 210.58056 * 22 5 3 42 42 H 1.09001 * 117.49733 * 214.97413 * 23 22 5 43 43 H 1.08995 * 117.49577 * 359.97438 * 23 22 5 44 44 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 45 45 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0071 2.6071 0.6101 7 7 4.1129 0.1706 0.7932 8 6 5.4467 0.0388 0.9355 9 8 6.1944 0.8340 0.4069 10 6 6.0089 -1.0974 1.7504 11 6 7.5368 -1.0172 1.7511 12 6 8.1077 -2.1711 2.5779 13 6 9.6356 -2.0914 2.5780 14 6 10.1979 -3.2275 3.3929 15 1 9.5320 -3.9358 3.8633 16 6 11.5624 -3.3632 3.5371 17 7 12.3731 -2.5009 2.9639 18 14 12.2593 -4.7720 4.5467 19 1 11.1457 -5.5960 5.0815 20 1 13.1291 -5.6142 3.6867 21 1 13.0572 -4.2259 5.6737 22 6 4.0828 1.1756 -1.4362 23 6 3.0534 0.9362 -2.5425 24 6 3.7164 2.3075 -2.3984 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.6004 3.4287 0.0203 29 1 3.6392 2.6778 1.6336 30 1 5.0956 2.6643 0.6101 31 1 3.5149 -0.4656 1.2157 32 1 5.6406 -1.0274 2.7738 33 1 5.6954 -2.0464 1.3155 34 1 7.9047 -1.0874 0.7274 35 1 7.8507 -0.0682 2.1857 36 1 7.7398 -2.1013 3.6015 37 1 7.7937 -3.1199 2.1429 38 1 10.0031 -2.1613 1.5543 39 1 9.9499 -1.1425 3.0128 40 1 13.3331 -2.5967 3.0650 41 1 5.0633 0.7138 -1.5526 42 1 3.3566 0.3167 -3.3866 43 1 2.0080 0.8488 -2.2467 44 1 3.1071 3.1226 -2.0077 45 1 4.4558 2.5902 -3.1476 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588928708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:33:45 Heat of formation + Delta-G solvation = -115.256863 kcal Electronic energy + Delta-G solvation = -24250.152366 eV Core-core repulsion = 20654.230963 eV Total energy + Delta-G solvation = -3595.921403 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 6.61 seconds Orbital eigenvalues (eV) -41.64128 -39.81386 -37.84337 -36.82180 -35.05035 -34.61916 -32.65058 -30.99853 -29.31403 -28.49133 -25.91492 -25.00886 -23.07641 -22.52685 -22.41298 -20.57757 -19.96766 -19.62015 -18.35152 -17.55363 -17.42936 -16.30629 -16.08986 -15.85285 -15.73381 -14.85805 -14.61712 -14.40767 -14.11536 -13.76964 -13.60228 -13.37632 -12.85032 -12.68377 -12.55554 -12.46710 -12.20044 -11.95170 -11.75458 -11.67955 -11.56371 -11.28273 -10.99918 -10.98704 -10.77581 -10.52806 -10.47705 -10.42380 -10.40295 -9.70626 -9.60778 -9.34387 -9.20664 -8.96167 -8.30020 -5.94673 -3.96975 1.59690 2.11406 2.62761 2.85826 3.33666 3.40918 3.44803 3.46424 4.07970 4.25473 4.49601 4.53111 4.63042 4.64904 4.71902 4.77537 4.97740 5.00145 5.07108 5.28775 5.32196 5.37279 5.41057 5.47909 5.51613 5.61395 5.72146 5.78019 5.85357 5.90933 6.02819 6.14647 6.19837 6.30967 6.55335 6.84892 7.02559 7.18406 7.20906 7.33534 7.75371 7.91160 8.06985 8.17162 8.48935 9.11077 9.66748 11.16708 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029483 B = 0.002464 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.459310 B =11361.103190 C =11796.749246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.468 3.532 4 O -0.493 6.493 5 C 0.225 3.775 6 C -0.155 4.155 7 N -0.728 5.728 8 C 0.519 3.481 9 O -0.525 6.525 10 C -0.138 4.138 11 C -0.103 4.103 12 C -0.111 4.111 13 C 0.020 3.980 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.153 4.153 23 C -0.183 4.183 24 C -0.168 4.168 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.407 0.593 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.135 0.865 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.869 6.928 -8.375 28.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.309 3.691 4 O -0.378 6.378 5 C 0.138 3.862 6 C -0.213 4.213 7 N -0.384 5.384 8 C 0.307 3.693 9 O -0.400 6.400 10 C -0.178 4.178 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.018 4.018 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.172 4.172 23 C -0.220 4.220 24 C -0.205 4.205 25 H 0.082 0.918 26 H 0.123 0.877 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.243 0.757 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.153 0.847 42 H 0.121 0.879 43 H 0.105 0.895 44 H 0.118 0.882 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -25.386 7.846 -8.772 27.981 hybrid contribution -0.169 -1.071 0.718 1.300 sum -25.555 6.775 -8.054 27.637 Atomic orbital electron populations 1.23347 0.75884 1.04132 1.02706 1.86537 1.23744 1.33050 1.83675 1.23645 0.91434 0.81832 0.72142 1.90696 1.66276 1.36281 1.44578 1.19718 0.83749 0.90419 0.92357 1.22185 1.05007 0.93394 1.00681 1.46130 1.08023 1.30286 1.54002 1.21121 0.80899 0.86765 0.80504 1.90682 1.58142 1.43646 1.47488 1.21816 0.99469 0.96383 1.00133 1.21457 0.90291 1.00570 1.01764 1.21649 0.99752 0.95641 0.97777 1.19097 0.88522 0.97005 0.97128 1.21325 0.91524 1.11610 1.31296 0.92714 1.25043 0.97341 0.96264 0.95960 1.69984 1.03086 1.36100 1.44314 0.86563 0.79057 0.82470 0.80062 1.19780 1.21065 1.21060 1.22574 1.01345 1.05355 0.87912 1.23132 0.97263 1.00393 1.01221 1.23061 1.03448 0.92090 1.01921 0.91764 0.87655 0.91658 0.90464 0.91958 0.88209 0.75700 0.88997 0.88907 0.91738 0.91725 0.93475 0.93466 0.96594 0.96593 0.93109 0.84703 0.87877 0.89464 0.88212 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.25 16 2 O -0.35 -2.98 9.43 -39.26 -0.37 -3.35 16 3 C 0.47 4.77 4.50 36.01 0.16 4.93 16 4 O -0.49 -5.90 15.84 -18.75 -0.30 -6.20 16 5 C 0.23 2.39 0.87 -132.97 -0.12 2.27 16 6 C -0.15 -1.71 7.72 37.16 0.29 -1.43 16 7 N -0.73 -7.38 5.04 -48.68 -0.25 -7.63 16 8 C 0.52 6.64 7.10 -10.98 -0.08 6.56 16 9 O -0.52 -8.41 12.52 5.56 0.07 -8.34 16 10 C -0.14 -1.72 5.70 -27.88 -0.16 -1.88 16 11 C -0.10 -1.76 4.50 -26.73 -0.12 -1.88 16 12 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 13 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 14 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 18 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C -0.15 -1.63 4.90 -90.61 -0.44 -2.07 16 23 C -0.18 -1.66 9.68 -26.73 -0.26 -1.92 16 24 C -0.17 -1.56 9.56 -26.73 -0.26 -1.81 16 25 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 26 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 28 H 0.08 0.80 6.73 -51.93 -0.35 0.45 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.27 6.17 -51.93 -0.32 0.95 16 31 H 0.41 3.23 7.91 -40.82 -0.32 2.91 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.14 1.68 6.58 -51.93 -0.34 1.34 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.09 0.80 6.19 -51.93 -0.32 0.48 16 44 H 0.10 0.94 7.30 -51.93 -0.38 0.56 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -33.53 367.56 -7.68 -41.21 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.49 Total: 0.34 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.60 Total: -11.67 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.49 Total: -34.35 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.60 Total: -17.89 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.53 -7.68 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588928708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.045 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.61 seconds