Wall clock time and date at job start Fri Apr 10 2020 20:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00372 * 2 1 4 4 O 1.20828 * 119.99377 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00124 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.46936 * 204.99998 * 5 3 2 7 7 N 1.46497 * 109.47121 * 324.99968 * 5 3 2 8 8 C 1.34779 * 119.99684 * 180.02562 * 7 5 3 9 9 O 1.21277 * 120.00359 * 359.97438 * 8 7 5 10 10 C 1.50705 * 119.99698 * 180.02562 * 8 7 5 11 11 C 1.52999 * 109.46920 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47091 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47091 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47295 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99882 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00218 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99776 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99797 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47451 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46677 * 120.00270 * 18 16 14 21 21 H 1.48498 * 109.46892 * 239.99844 * 18 16 14 22 22 C 1.53003 * 109.46888 * 85.00078 * 5 3 2 23 23 C 1.53001 * 117.51964 * 356.28272 * 22 5 3 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 5 25 25 H 1.09000 * 109.46915 * 59.99741 * 1 2 3 26 26 H 1.08998 * 109.47183 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46791 * 299.99753 * 1 2 3 28 28 H 1.09004 * 109.47051 * 300.00151 * 6 5 3 29 29 H 1.08991 * 109.47188 * 60.00146 * 6 5 3 30 30 H 1.09001 * 109.46725 * 180.02562 * 6 5 3 31 31 H 0.96995 * 120.00063 * 0.02562 * 7 5 3 32 32 H 1.08991 * 109.47102 * 299.99847 * 10 8 7 33 33 H 1.08998 * 109.47188 * 59.99756 * 10 8 7 34 34 H 1.09004 * 109.46823 * 299.99916 * 11 10 8 35 35 H 1.08998 * 109.47344 * 59.99906 * 11 10 8 36 36 H 1.08996 * 109.46845 * 299.99447 * 12 11 10 37 37 H 1.08998 * 109.47172 * 59.99716 * 12 11 10 38 38 H 1.08998 * 109.47151 * 300.00156 * 13 12 11 39 39 H 1.08998 * 109.47344 * 59.99821 * 13 12 11 40 40 H 0.97006 * 119.99946 * 180.02562 * 17 16 14 41 41 H 1.09002 * 115.54973 * 210.58056 * 22 5 3 42 42 H 1.09001 * 117.49733 * 214.97413 * 23 22 5 43 43 H 1.08995 * 117.49577 * 359.97438 * 23 22 5 44 44 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 45 45 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0071 2.6071 0.6101 7 7 4.1129 0.1706 0.7932 8 6 5.4467 0.0388 0.9355 9 8 6.1944 0.8340 0.4069 10 6 6.0089 -1.0974 1.7504 11 6 7.5368 -1.0172 1.7511 12 6 8.1077 -2.1711 2.5779 13 6 9.6356 -2.0914 2.5780 14 6 10.1979 -3.2275 3.3929 15 1 9.5320 -3.9358 3.8633 16 6 11.5624 -3.3632 3.5371 17 7 12.3731 -2.5009 2.9639 18 14 12.2593 -4.7720 4.5467 19 1 11.1457 -5.5960 5.0815 20 1 13.1291 -5.6142 3.6867 21 1 13.0572 -4.2259 5.6737 22 6 4.0828 1.1756 -1.4362 23 6 3.0534 0.9362 -2.5425 24 6 3.7164 2.3075 -2.3984 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.6004 3.4287 0.0203 29 1 3.6392 2.6778 1.6336 30 1 5.0956 2.6643 0.6101 31 1 3.5149 -0.4656 1.2157 32 1 5.6406 -1.0274 2.7738 33 1 5.6954 -2.0464 1.3155 34 1 7.9047 -1.0874 0.7274 35 1 7.8507 -0.0682 2.1857 36 1 7.7398 -2.1013 3.6015 37 1 7.7937 -3.1199 2.1429 38 1 10.0031 -2.1613 1.5543 39 1 9.9499 -1.1425 3.0128 40 1 13.3331 -2.5967 3.0650 41 1 5.0633 0.7138 -1.5526 42 1 3.3566 0.3167 -3.3866 43 1 2.0080 0.8488 -2.2467 44 1 3.1071 3.1226 -2.0077 45 1 4.4558 2.5902 -3.1476 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588928708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:33:41 Heat of formation + Delta-G solvation = -135.691017 kcal Electronic energy + Delta-G solvation = -24251.038458 eV Core-core repulsion = 20654.230963 eV Total energy + Delta-G solvation = -3596.807495 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 5.99 seconds Orbital eigenvalues (eV) -42.44670 -40.76089 -38.65597 -37.59351 -36.61545 -35.64381 -34.58617 -32.20080 -30.80030 -29.04392 -27.47979 -26.06840 -24.11578 -23.85081 -23.23003 -21.87214 -21.36311 -20.48368 -19.20484 -18.39311 -18.31278 -18.25190 -17.12096 -16.86548 -16.56009 -16.48204 -15.78529 -15.61230 -15.09406 -14.77077 -14.52678 -14.45265 -14.20947 -13.70955 -13.68012 -13.56794 -13.36903 -13.18050 -13.09685 -12.84058 -12.77000 -12.47306 -12.29617 -12.10447 -12.08840 -11.89474 -11.81483 -11.56238 -11.33006 -11.30710 -11.20265 -11.07625 -10.60182 -10.53740 -10.26564 -8.17180 -6.28841 0.80260 1.41674 1.41948 1.42357 1.55835 1.63541 1.97379 2.43301 2.68865 3.15806 3.31038 3.50358 3.76808 3.81913 3.86419 4.07474 4.13693 4.19449 4.21680 4.26526 4.31701 4.52146 4.62828 4.66122 4.71073 4.72196 4.73423 4.86348 4.90000 4.92792 4.95780 5.05811 5.11472 5.18396 5.24794 5.31030 5.36967 5.43904 5.60935 5.82302 5.91388 6.28033 6.42424 6.49169 6.90263 7.22524 7.40768 8.95235 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029483 B = 0.002464 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.459310 B =11361.103190 C =11796.749246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.353 6.353 3 C 0.476 3.524 4 O -0.513 6.513 5 C 0.223 3.777 6 C -0.152 4.152 7 N -0.712 5.712 8 C 0.521 3.479 9 O -0.563 6.563 10 C -0.128 4.128 11 C -0.095 4.095 12 C -0.096 4.096 13 C 0.018 3.982 14 C -0.540 4.540 15 H 0.065 0.935 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.968 3.032 19 H -0.257 1.257 20 H -0.279 1.279 21 H -0.280 1.280 22 C -0.167 4.167 23 C -0.170 4.170 24 C -0.166 4.166 25 H 0.064 0.936 26 H 0.135 0.865 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.421 0.579 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.060 0.940 38 H -0.015 1.015 39 H -0.015 1.015 40 H 0.262 0.738 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.121 5.127 -7.746 29.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C 0.318 3.682 4 O -0.400 6.400 5 C 0.135 3.865 6 C -0.209 4.209 7 N -0.368 5.368 8 C 0.310 3.690 9 O -0.441 6.441 10 C -0.167 4.167 11 C -0.133 4.133 12 C -0.134 4.134 13 C -0.019 4.019 14 C -0.578 4.578 15 H 0.084 0.916 16 C -0.204 4.204 17 N -0.579 5.579 18 Si 0.792 3.208 19 H -0.181 1.181 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.186 4.186 23 C -0.207 4.207 24 C -0.204 4.204 25 H 0.083 0.917 26 H 0.153 0.847 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.259 0.741 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.004 0.996 39 H 0.003 0.997 40 H 0.071 0.929 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.107 0.893 44 H 0.117 0.883 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -27.693 6.016 -8.134 29.483 hybrid contribution 0.501 -0.486 0.488 0.851 sum -27.191 5.531 -7.647 28.782 Atomic orbital electron populations 1.23664 0.74066 1.06171 1.02857 1.86523 1.25436 1.31783 1.83101 1.23389 0.90979 0.82099 0.71703 1.90692 1.66563 1.37050 1.45690 1.19683 0.84451 0.90050 0.92344 1.22110 1.03654 0.94132 1.01049 1.45905 1.07311 1.30249 1.53348 1.21128 0.81450 0.86358 0.80096 1.90686 1.59244 1.45036 1.49114 1.21687 0.95583 0.97485 1.01988 1.21239 0.93945 0.98324 0.99782 1.21449 0.95198 0.97465 0.99289 1.19059 0.93070 0.95049 0.94684 1.21798 0.92216 1.12256 1.31483 0.91631 1.26078 0.97897 0.99244 0.97202 1.70135 1.03536 1.38308 1.45900 0.85355 0.78489 0.78755 0.78175 1.18089 1.20518 1.20539 1.22454 1.01009 1.06679 0.88450 1.23173 0.96836 1.00085 1.00599 1.23113 1.03559 0.92125 1.01567 0.91682 0.84703 0.91523 0.90113 0.91647 0.90179 0.74108 0.86349 0.86231 0.93567 0.93626 0.92173 0.92117 0.99648 0.99692 0.92891 0.86715 0.86707 0.89255 0.88326 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 113.37 1.20 1.42 16 2 O -0.35 -5.10 9.43 -51.43 -0.49 -5.59 16 3 C 0.48 8.97 4.50 71.24 0.32 9.29 16 4 O -0.51 -11.64 15.84 21.96 0.35 -11.29 16 5 C 0.22 4.53 0.87 2.86 0.00 4.53 16 6 C -0.15 -3.35 7.72 71.98 0.56 -2.80 16 7 N -0.71 -13.36 5.04 -426.33 -2.15 -15.51 16 8 C 0.52 12.88 7.10 87.66 0.62 13.51 16 9 O -0.56 -18.46 12.52 -3.02 -0.04 -18.49 16 10 C -0.13 -2.92 5.70 29.85 0.17 -2.75 16 11 C -0.09 -3.25 4.50 30.59 0.14 -3.11 16 12 C -0.10 -3.84 5.15 30.59 0.16 -3.68 16 13 C 0.02 1.00 4.97 29.85 0.15 1.15 16 14 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 15 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 16 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 17 N -0.94 -58.88 13.29 21.45 0.28 -58.60 16 18 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 19 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 C -0.17 -3.47 4.90 -10.79 -0.05 -3.53 16 23 C -0.17 -2.85 9.68 30.59 0.30 -2.55 16 24 C -0.17 -2.99 9.56 30.60 0.29 -2.69 16 25 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 26 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 28 H 0.08 1.69 6.73 -2.39 -0.02 1.67 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 2.12 6.17 -2.39 -0.01 2.10 16 31 H 0.42 5.57 7.91 -92.71 -0.73 4.84 16 32 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 35 H 0.04 1.71 8.10 -2.39 -0.02 1.70 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H -0.01 -0.89 8.14 -2.39 -0.02 -0.90 16 39 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 40 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 41 H 0.11 2.92 6.58 -2.39 -0.02 2.90 16 42 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.09 1.47 6.19 -2.39 -0.01 1.45 16 44 H 0.10 1.80 7.30 -2.39 -0.02 1.78 16 45 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -74.40 367.56 4.77 -69.63 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.24 Total: 15.20 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 4.54 Total: -22.04 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -1.86 Total: -74.10 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.18 Total: -35.37 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -74.40 4.77 -69.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588928708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.065 kcal (2) G-P(sol) polarization free energy of solvation -74.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.99 seconds