Wall clock time and date at job start Fri Apr 10 2020 20:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47247 * 2 1 4 4 C 1.50707 * 109.47184 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99638 * 359.97438 * 4 3 2 6 6 N 1.34769 * 120.00070 * 179.97438 * 4 3 2 7 7 C 1.46936 * 120.63269 * 3.75627 * 6 4 3 8 8 C 1.53189 * 108.77606 * 126.41525 * 7 6 4 9 9 C 1.53034 * 109.31190 * 54.63637 * 8 7 6 10 10 C 1.53036 * 109.54071 * 298.63211 * 9 8 7 11 11 C 1.46927 * 120.63258 * 183.78045 * 6 4 3 12 12 H 1.09003 * 109.58625 * 113.65621 * 11 6 4 13 13 C 1.50702 * 109.58430 * 353.37122 * 11 6 4 14 14 O 1.20821 * 120.00092 * 294.24675 * 13 11 6 15 15 O 1.34223 * 119.99931 * 114.24447 * 13 11 6 16 16 C 1.45194 * 117.00270 * 179.97438 * 15 13 11 17 17 C 1.53006 * 109.47624 * 180.02562 * 16 15 13 18 18 C 1.50698 * 109.46987 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00478 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99606 * 180.27391 * 18 17 16 21 21 N 1.31512 * 119.99662 * 359.72397 * 20 18 17 22 22 Si 1.86803 * 119.99747 * 179.72550 * 20 18 17 23 23 H 1.48497 * 109.47078 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46664 * 120.00272 * 22 20 18 25 25 H 1.48498 * 109.46535 * 239.99556 * 22 20 18 26 26 H 1.08998 * 109.46398 * 60.00536 * 1 2 3 27 27 H 1.08997 * 109.47107 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47248 * 300.00309 * 1 2 3 29 29 H 1.08994 * 109.47781 * 239.99154 * 2 1 3 30 30 H 1.09004 * 109.46713 * 119.99797 * 2 1 3 31 31 H 1.08997 * 109.47249 * 59.99692 * 3 2 1 32 32 H 1.08998 * 109.46983 * 299.99105 * 3 2 1 33 33 H 1.08999 * 109.58568 * 246.20348 * 7 6 4 34 34 H 1.09007 * 109.58169 * 6.48196 * 7 6 4 35 35 H 1.09004 * 109.49483 * 174.58808 * 8 7 6 36 36 H 1.08997 * 109.49946 * 294.68159 * 8 7 6 37 37 H 1.09001 * 109.45971 * 58.65759 * 9 8 7 38 38 H 1.09000 * 109.45709 * 178.61192 * 9 8 7 39 39 H 1.09002 * 109.50163 * 301.41734 * 10 9 8 40 40 H 1.09001 * 109.49758 * 181.31864 * 10 9 8 41 41 H 1.09005 * 109.47001 * 59.99878 * 16 15 13 42 42 H 1.09003 * 109.47199 * 300.00505 * 16 15 13 43 43 H 1.08995 * 109.46922 * 60.00106 * 17 16 15 44 44 H 1.08998 * 109.46508 * 299.99779 * 17 16 15 45 45 H 0.97008 * 119.99606 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1534 0.3920 0.0015 6 7 4.2209 2.6096 0.0002 7 6 3.5027 3.8888 0.0820 8 6 4.0770 4.7032 1.2455 9 6 5.5905 4.8425 1.0673 10 6 6.2375 3.4557 1.0828 11 6 5.6878 2.6271 -0.0825 12 1 5.9951 3.0737 -1.0282 13 6 6.2156 1.2183 0.0060 14 8 6.0780 0.5846 1.0255 15 8 6.8385 0.6675 -1.0476 16 6 7.3215 -0.6927 -0.8908 17 6 7.9986 -1.1461 -2.1859 18 6 8.4993 -2.5582 -2.0232 19 1 8.3499 -3.0799 -1.0895 20 6 9.1535 -3.1818 -3.0644 21 7 9.3358 -2.5462 -4.2013 22 14 9.7810 -4.9294 -2.8602 23 1 9.4521 -5.4172 -1.4967 24 1 9.1367 -5.8077 -3.8696 25 1 11.2533 -4.9522 -3.0520 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9562 -0.8901 33 1 3.6319 4.4405 -0.8491 34 1 2.4423 3.7022 0.2520 35 1 3.6195 5.6925 1.2577 36 1 3.8667 4.1930 2.1854 37 1 5.8007 5.3307 0.1156 38 1 5.9982 5.4425 1.8808 39 1 6.0069 2.9571 2.0243 40 1 7.3178 3.5571 0.9793 41 1 6.4829 -1.3527 -0.6685 42 1 8.0406 -0.7309 -0.0726 43 1 8.8372 -0.4862 -2.4077 44 1 7.2797 -1.1079 -3.0043 45 1 9.7964 -2.9849 -4.9337 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919617841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:34:26 Heat of formation + Delta-G solvation = -139.621570 kcal Electronic energy + Delta-G solvation = -25103.602591 eV Core-core repulsion = 21506.624655 eV Total energy + Delta-G solvation = -3596.977936 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.01185 -38.94300 -37.66105 -35.71976 -34.49823 -33.22976 -33.14007 -31.80659 -30.05804 -28.29779 -26.05229 -24.91840 -23.95945 -22.43145 -21.20392 -20.78700 -20.36366 -18.91798 -17.65938 -16.79168 -16.34109 -16.15202 -15.87233 -15.38079 -15.26595 -14.83161 -14.53339 -14.38143 -14.12165 -14.02505 -13.43779 -13.24189 -13.08808 -12.62834 -12.52105 -12.26836 -12.15959 -11.88549 -11.68805 -11.45088 -11.28962 -11.14800 -11.09679 -10.96687 -10.87282 -10.85344 -10.62525 -10.56134 -9.89354 -9.53916 -9.39581 -9.34318 -9.16073 -8.83425 -8.35577 -6.01961 -4.05053 2.39809 2.58603 3.26627 3.31663 3.33142 3.40273 3.46925 4.33891 4.40500 4.47004 4.55363 4.64740 4.71738 4.75795 4.85164 4.96625 5.10772 5.16754 5.26370 5.30256 5.34524 5.39054 5.41196 5.47146 5.52273 5.55017 5.61390 5.73513 5.77301 5.90661 6.03505 6.05727 6.19562 6.27960 6.30439 6.42993 6.84145 7.17052 7.32828 7.70710 7.76411 7.98429 8.11629 8.34036 8.60606 9.00867 9.58514 11.09834 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.003772 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.199321 B = 7421.415426 C = 8714.485883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.131 4.131 4 C 0.501 3.499 5 O -0.495 6.495 6 N -0.609 5.609 7 C 0.111 3.889 8 C -0.138 4.138 9 C -0.117 4.117 10 C -0.124 4.124 11 C 0.152 3.848 12 H 0.100 0.900 13 C 0.472 3.528 14 O -0.502 6.502 15 O -0.361 6.361 16 C 0.084 3.916 17 C 0.025 3.975 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.341 18.567 9.400 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.171 4.171 4 C 0.290 3.710 5 O -0.369 6.369 6 N -0.348 5.348 7 C -0.012 4.012 8 C -0.176 4.176 9 C -0.154 4.154 10 C -0.163 4.163 11 C 0.048 3.952 12 H 0.118 0.882 13 C 0.314 3.686 14 O -0.390 6.390 15 O -0.277 6.277 16 C 0.011 3.989 17 C -0.012 4.012 18 C -0.559 4.559 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.531 5.531 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.955 17.705 9.509 25.660 hybrid contribution 0.387 -0.901 0.067 0.983 sum -15.569 16.804 9.576 24.829 Atomic orbital electron populations 1.21774 0.95473 1.02037 1.01488 1.21322 0.95169 0.94555 1.04091 1.21698 0.91090 1.00410 1.03921 1.21009 0.90766 0.83231 0.76023 1.90871 1.68183 1.30666 1.47181 1.48093 1.04787 1.06764 1.75115 1.21789 0.96518 0.83693 0.99160 1.21957 0.96397 1.00359 0.98891 1.21502 0.94952 0.96213 1.02763 1.21874 1.00847 0.95371 0.98181 1.20740 0.80849 0.92383 1.01226 0.88189 1.22421 0.75590 0.87982 0.82583 1.90587 1.53804 1.62212 1.32391 1.86423 1.67507 1.33568 1.40210 1.23487 0.97421 0.76159 1.01792 1.19156 0.95685 0.95976 0.90384 1.21052 1.37040 0.98142 0.99714 0.92256 1.24984 0.95875 0.98298 0.95078 1.69996 1.42192 1.37294 1.03581 0.86429 0.78465 0.84223 0.78295 1.19585 1.20865 1.20882 0.92738 0.92325 0.92866 0.90906 0.91070 0.89101 0.88873 0.90830 0.89219 0.90320 0.91195 0.91230 0.90944 0.90098 0.89931 0.92229 0.92936 0.95587 0.95545 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.11 -1.26 5.22 -26.73 -0.14 -1.40 16 3 C -0.13 -1.28 4.08 -27.88 -0.11 -1.40 16 4 C 0.50 7.34 7.56 -10.99 -0.08 7.25 16 5 O -0.50 -10.08 11.53 -21.75 -0.25 -10.33 16 6 N -0.61 -7.43 2.97 -166.52 -0.49 -7.93 16 7 C 0.11 0.78 6.33 -3.71 -0.02 0.75 16 8 C -0.14 -0.85 6.08 -26.62 -0.16 -1.01 16 9 C -0.12 -0.84 5.88 -26.69 -0.16 -1.00 16 10 C -0.12 -1.38 5.29 -26.61 -0.14 -1.52 16 11 C 0.15 2.15 3.35 -68.75 -0.23 1.92 16 12 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 13 C 0.47 9.52 4.51 36.01 0.16 9.68 16 14 O -0.50 -11.50 14.27 -26.96 -0.38 -11.88 16 15 O -0.36 -8.28 10.22 -41.75 -0.43 -8.71 16 16 C 0.08 2.12 5.40 37.16 0.20 2.32 16 17 C 0.03 0.71 5.35 -27.88 -0.15 0.56 16 18 C -0.52 -15.58 9.11 -34.44 -0.31 -15.89 16 19 H 0.06 1.73 7.74 -52.49 -0.41 1.33 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -27.43 13.29 55.43 0.74 -26.69 16 22 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 30 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 31 H 0.09 0.67 7.54 -51.93 -0.39 0.28 16 32 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.45 5.95 -51.92 -0.31 0.14 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 1.04 7.86 -51.93 -0.41 0.63 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.57 8.13 -51.93 -0.42 1.15 16 42 H 0.05 1.30 8.13 -51.93 -0.42 0.88 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -36.99 362.33 -9.09 -46.08 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -7.83 Total: -4.36 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -0.88 Total: 1.08 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.24 Total: -34.62 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -1.06 Total: -30.91 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.99 -9.09 -46.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919617841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.546 kcal (2) G-P(sol) polarization free energy of solvation -36.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds