Wall clock time and date at job start Fri Apr 10 2020 20:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47247 * 2 1 4 4 C 1.50707 * 109.47184 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99638 * 359.97438 * 4 3 2 6 6 N 1.34769 * 120.00070 * 179.97438 * 4 3 2 7 7 C 1.46936 * 120.63269 * 3.75627 * 6 4 3 8 8 C 1.53189 * 108.77606 * 126.41525 * 7 6 4 9 9 C 1.53034 * 109.31190 * 54.63637 * 8 7 6 10 10 C 1.53036 * 109.54071 * 298.63211 * 9 8 7 11 11 C 1.46927 * 120.63258 * 183.78045 * 6 4 3 12 12 H 1.09003 * 109.58625 * 113.65621 * 11 6 4 13 13 C 1.50702 * 109.58430 * 353.37122 * 11 6 4 14 14 O 1.20821 * 120.00092 * 294.24675 * 13 11 6 15 15 O 1.34223 * 119.99931 * 114.24447 * 13 11 6 16 16 C 1.45194 * 117.00270 * 179.97438 * 15 13 11 17 17 C 1.53006 * 109.47624 * 180.02562 * 16 15 13 18 18 C 1.50698 * 109.46987 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00478 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99606 * 180.27391 * 18 17 16 21 21 N 1.31512 * 119.99662 * 359.72397 * 20 18 17 22 22 Si 1.86803 * 119.99747 * 179.72550 * 20 18 17 23 23 H 1.48497 * 109.47078 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46664 * 120.00272 * 22 20 18 25 25 H 1.48498 * 109.46535 * 239.99556 * 22 20 18 26 26 H 1.08998 * 109.46398 * 60.00536 * 1 2 3 27 27 H 1.08997 * 109.47107 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47248 * 300.00309 * 1 2 3 29 29 H 1.08994 * 109.47781 * 239.99154 * 2 1 3 30 30 H 1.09004 * 109.46713 * 119.99797 * 2 1 3 31 31 H 1.08997 * 109.47249 * 59.99692 * 3 2 1 32 32 H 1.08998 * 109.46983 * 299.99105 * 3 2 1 33 33 H 1.08999 * 109.58568 * 246.20348 * 7 6 4 34 34 H 1.09007 * 109.58169 * 6.48196 * 7 6 4 35 35 H 1.09004 * 109.49483 * 174.58808 * 8 7 6 36 36 H 1.08997 * 109.49946 * 294.68159 * 8 7 6 37 37 H 1.09001 * 109.45971 * 58.65759 * 9 8 7 38 38 H 1.09000 * 109.45709 * 178.61192 * 9 8 7 39 39 H 1.09002 * 109.50163 * 301.41734 * 10 9 8 40 40 H 1.09001 * 109.49758 * 181.31864 * 10 9 8 41 41 H 1.09005 * 109.47001 * 59.99878 * 16 15 13 42 42 H 1.09003 * 109.47199 * 300.00505 * 16 15 13 43 43 H 1.08995 * 109.46922 * 60.00106 * 17 16 15 44 44 H 1.08998 * 109.46508 * 299.99779 * 17 16 15 45 45 H 0.97008 * 119.99606 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1534 0.3920 0.0015 6 7 4.2209 2.6096 0.0002 7 6 3.5027 3.8888 0.0820 8 6 4.0770 4.7032 1.2455 9 6 5.5905 4.8425 1.0673 10 6 6.2375 3.4557 1.0828 11 6 5.6878 2.6271 -0.0825 12 1 5.9951 3.0737 -1.0282 13 6 6.2156 1.2183 0.0060 14 8 6.0780 0.5846 1.0255 15 8 6.8385 0.6675 -1.0476 16 6 7.3215 -0.6927 -0.8908 17 6 7.9986 -1.1461 -2.1859 18 6 8.4993 -2.5582 -2.0232 19 1 8.3499 -3.0799 -1.0895 20 6 9.1535 -3.1818 -3.0644 21 7 9.3358 -2.5462 -4.2013 22 14 9.7810 -4.9294 -2.8602 23 1 9.4521 -5.4172 -1.4967 24 1 9.1367 -5.8077 -3.8696 25 1 11.2533 -4.9522 -3.0520 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9562 -0.8901 33 1 3.6319 4.4405 -0.8491 34 1 2.4423 3.7022 0.2520 35 1 3.6195 5.6925 1.2577 36 1 3.8667 4.1930 2.1854 37 1 5.8007 5.3307 0.1156 38 1 5.9982 5.4425 1.8808 39 1 6.0069 2.9571 2.0243 40 1 7.3178 3.5571 0.9793 41 1 6.4829 -1.3527 -0.6685 42 1 8.0406 -0.7309 -0.0726 43 1 8.8372 -0.4862 -2.4077 44 1 7.2797 -1.1079 -3.0043 45 1 9.7964 -2.9849 -4.9337 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919617841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:34:26 Heat of formation + Delta-G solvation = -162.460038 kcal Electronic energy + Delta-G solvation = -25104.592942 eV Core-core repulsion = 21506.624655 eV Total energy + Delta-G solvation = -3597.968287 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.25079 -40.46362 -38.63714 -37.48485 -35.48673 -35.42185 -33.99787 -32.88146 -32.11119 -29.09099 -27.51848 -26.42694 -25.00660 -23.49337 -22.92200 -21.95651 -21.63127 -19.92873 -19.17937 -18.41947 -17.96035 -17.60815 -17.06766 -16.82723 -16.73915 -16.43544 -15.63068 -15.23524 -15.17978 -14.89412 -14.77287 -14.45083 -14.40021 -14.09382 -13.87846 -13.68091 -13.14190 -13.06249 -12.91023 -12.72271 -12.64587 -12.56477 -12.50607 -12.19920 -12.02799 -11.85025 -11.75503 -11.69754 -11.62055 -11.52173 -11.46617 -11.13014 -10.67155 -10.66061 -9.80790 -8.31287 -6.45243 1.13778 1.36556 1.38487 1.49220 1.53023 1.78076 2.03261 2.36886 3.02049 3.42705 3.69492 3.74540 3.78697 3.92518 4.01520 4.04618 4.08726 4.15607 4.16967 4.27619 4.42395 4.53881 4.61690 4.63353 4.66393 4.70060 4.77045 4.82875 4.85792 5.03236 5.10140 5.17234 5.21403 5.21948 5.22969 5.37204 5.39729 5.43427 5.44761 5.59556 5.75744 6.02259 6.23990 6.66287 6.86689 7.11030 7.24277 8.81951 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.003772 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.199321 B = 7421.415426 C = 8714.485883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.119 4.119 4 C 0.485 3.515 5 O -0.567 6.567 6 N -0.605 5.605 7 C 0.100 3.900 8 C -0.134 4.134 9 C -0.111 4.111 10 C -0.120 4.120 11 C 0.155 3.845 12 H 0.117 0.883 13 C 0.464 3.536 14 O -0.535 6.535 15 O -0.373 6.373 16 C 0.104 3.896 17 C 0.036 3.964 18 C -0.554 4.554 19 H 0.059 0.941 20 C 0.007 3.993 21 N -0.925 5.925 22 Si 0.977 3.023 23 H -0.266 1.266 24 H -0.272 1.272 25 H -0.269 1.269 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.039 0.961 42 H 0.052 0.948 43 H 0.010 0.990 44 H 0.000 1.000 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.941 20.892 9.728 29.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.158 4.158 4 C 0.275 3.725 5 O -0.446 6.446 6 N -0.342 5.342 7 C -0.019 4.019 8 C -0.172 4.172 9 C -0.148 4.148 10 C -0.158 4.158 11 C 0.050 3.950 12 H 0.135 0.865 13 C 0.309 3.691 14 O -0.425 6.425 15 O -0.290 6.290 16 C 0.031 3.969 17 C -0.001 4.001 18 C -0.591 4.591 19 H 0.077 0.923 20 C -0.192 4.192 21 N -0.564 5.564 22 Si 0.800 3.200 23 H -0.190 1.190 24 H -0.197 1.197 25 H -0.194 1.194 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.115 0.885 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.028 0.972 44 H 0.019 0.981 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.585 20.116 9.845 28.475 hybrid contribution 0.856 -1.535 -0.031 1.758 sum -16.729 18.581 9.814 26.859 Atomic orbital electron populations 1.21717 0.92567 1.02363 1.03235 1.21290 0.97556 0.95316 1.01158 1.21759 0.87191 0.99848 1.07007 1.22031 0.92884 0.82798 0.74747 1.90840 1.69678 1.33338 1.50769 1.48370 1.03842 1.08299 1.73664 1.22300 0.97502 0.81289 1.00826 1.21980 0.95525 1.01869 0.97814 1.21539 0.95620 0.93286 1.04399 1.21917 1.01314 0.97156 0.95441 1.20914 0.82549 0.88047 1.03481 0.86525 1.23716 0.74202 0.90042 0.81170 1.90551 1.54744 1.63684 1.33478 1.86415 1.68387 1.32068 1.42113 1.22920 0.96321 0.77674 1.00011 1.18947 0.94481 0.95802 0.90848 1.21366 1.38397 0.99026 1.00345 0.92282 1.25998 0.95470 1.03344 0.94349 1.70105 1.42351 1.39518 1.04435 0.85222 0.78306 0.77817 0.78615 1.19001 1.19689 1.19402 0.91030 0.92866 0.90910 0.94124 0.94004 0.85622 0.85528 0.88527 0.86387 0.86720 0.92306 0.89526 0.89335 0.92439 0.89886 0.94209 0.92949 0.97182 0.98126 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.11 -2.61 5.22 30.59 0.16 -2.45 16 3 C -0.12 -2.09 4.08 29.85 0.12 -1.97 16 4 C 0.48 14.25 7.56 87.66 0.66 14.91 16 5 O -0.57 -24.66 11.53 23.06 0.27 -24.40 16 6 N -0.60 -13.92 2.97 -799.14 -2.38 -16.30 16 7 C 0.10 0.99 6.33 86.36 0.55 1.54 16 8 C -0.13 -1.07 6.08 30.67 0.19 -0.89 16 9 C -0.11 -1.22 5.88 30.62 0.18 -1.04 16 10 C -0.12 -2.55 5.29 30.67 0.16 -2.39 16 11 C 0.15 4.34 3.35 44.23 0.15 4.49 16 12 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 13 C 0.46 19.75 4.51 71.24 0.32 20.07 16 14 O -0.54 -26.18 14.27 29.83 0.43 -25.76 16 15 O -0.37 -18.22 10.22 -48.95 -0.50 -18.72 16 16 C 0.10 5.65 5.40 71.98 0.39 6.03 16 17 C 0.04 2.19 5.35 29.85 0.16 2.35 16 18 C -0.55 -34.35 9.11 25.60 0.23 -34.12 16 19 H 0.06 3.58 7.74 -2.91 -0.02 3.55 16 20 C 0.01 0.45 5.46 84.66 0.46 0.91 16 21 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 22 Si 0.98 46.16 29.54 68.60 2.03 48.19 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.04 1.15 8.10 -2.39 -0.02 1.13 16 30 H 0.04 1.16 8.10 -2.39 -0.02 1.14 16 31 H 0.13 1.36 7.54 -2.39 -0.02 1.34 16 32 H 0.13 1.42 8.07 -2.39 -0.02 1.40 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.12 0.53 5.95 -2.38 -0.01 0.52 16 35 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 36 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 1.49 7.86 -2.39 -0.02 1.48 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.04 2.28 8.13 -2.38 -0.02 2.26 16 42 H 0.05 2.78 8.13 -2.39 -0.02 2.76 16 43 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -87.86 362.33 5.52 -82.34 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 0.95 Total: 6.21 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 4.45 Total: 6.09 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -2.09 Total: -73.95 kcal Atomic # 8 Polarization: -69.07 SS G_CDS: 0.19 Total: -68.88 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -87.86 5.52 -82.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919617841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.125 kcal (2) G-P(sol) polarization free energy of solvation -87.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds