Wall clock time and date at job start Fri Apr 10 2020 20:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46900 * 2 1 4 4 C 1.50704 * 109.47015 * 119.99830 * 2 1 3 5 5 H 1.08004 * 119.99507 * 120.00295 * 4 2 1 6 6 C 1.37872 * 120.00168 * 299.99992 * 4 2 1 7 7 N 1.31514 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00085 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47414 * 90.00026 * 8 6 4 10 10 H 1.48502 * 109.47134 * 210.00171 * 8 6 4 11 11 H 1.48505 * 109.46949 * 330.00118 * 8 6 4 12 12 C 1.50704 * 109.47289 * 239.99947 * 2 1 3 13 13 O 1.21280 * 119.99647 * 239.99944 * 12 2 1 14 14 N 1.34775 * 119.99637 * 59.99602 * 12 2 1 15 15 C 1.46502 * 119.99666 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47149 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47236 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47236 * 180.02562 * 17 16 15 19 19 C 1.53005 * 109.47471 * 184.86749 * 18 17 16 20 20 C 1.50692 * 112.84700 * 66.26306 * 19 18 17 21 21 O 1.20824 * 120.00175 * 234.50056 * 20 19 18 22 22 O 1.34237 * 119.99884 * 54.50575 * 20 19 18 23 23 C 1.53782 * 113.61303 * 295.07277 * 19 18 17 24 24 C 1.53772 * 87.08191 * 220.01801 * 23 19 18 25 25 C 1.53774 * 113.61379 * 197.57749 * 19 18 17 26 26 H 1.08993 * 109.47263 * 60.00316 * 1 2 3 27 27 H 1.09006 * 109.46813 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47184 * 299.99893 * 1 2 3 29 29 H 0.96999 * 120.00045 * 179.97438 * 7 6 4 30 30 H 0.96994 * 120.00262 * 0.02562 * 14 12 2 31 31 H 1.09007 * 109.46722 * 60.01040 * 15 14 12 32 32 H 1.08994 * 109.47668 * 300.00955 * 15 14 12 33 33 H 1.09006 * 109.46708 * 60.00409 * 16 15 14 34 34 H 1.08994 * 109.47624 * 300.00993 * 16 15 14 35 35 H 1.09007 * 109.46786 * 60.00958 * 17 16 15 36 36 H 1.08994 * 109.47516 * 300.00927 * 17 16 15 37 37 H 1.09008 * 109.46792 * 64.87259 * 18 17 16 38 38 H 1.08997 * 109.47396 * 304.86975 * 18 17 16 39 39 H 0.96696 * 116.99770 * 179.97438 * 22 20 19 40 40 H 1.09001 * 113.61762 * 105.46390 * 23 19 18 41 41 H 1.09005 * 113.69117 * 334.57728 * 23 19 18 42 42 H 1.08996 * 113.61966 * 139.98087 * 24 23 19 43 43 H 1.09003 * 113.61540 * 270.88215 * 24 23 19 44 44 H 1.08993 * 113.62161 * 25.43254 * 25 19 18 45 45 H 1.09004 * 113.61460 * 254.52333 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.6304 -0.5440 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4880 -2.5653 3.7122 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1191 14 7 1.7067 -0.2500 -2.4545 15 6 2.1955 -0.9403 -3.6507 16 6 1.6848 -0.2195 -4.9000 17 6 2.1948 -0.9408 -6.1492 18 6 1.6846 -0.2197 -7.3984 19 6 2.0922 -1.0082 -8.6447 20 6 1.4135 -2.3505 -8.7358 21 8 2.0742 -3.3544 -8.8600 22 8 0.0747 -2.4308 -8.6790 23 6 3.6131 -1.0708 -8.8640 24 6 3.3257 -0.8809 -10.3626 25 6 2.0179 -0.1886 -9.9437 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7081 1.1609 3.4844 30 1 1.1493 0.5388 -2.5435 31 1 1.8325 -1.9681 -3.6509 32 1 3.2855 -0.9399 -3.6506 33 1 2.0474 0.8084 -4.9000 34 1 0.5949 -0.2203 -4.8999 35 1 1.8318 -1.9686 -6.1489 36 1 3.2847 -0.9405 -6.1495 37 1 2.1175 0.7798 -7.4432 38 1 0.5982 -0.1436 -7.3558 39 1 -0.3151 -3.3135 -8.7420 40 1 4.0496 -2.0399 -8.6224 41 1 4.1550 -0.2387 -8.4144 42 1 4.0309 -0.2164 -10.8617 43 1 3.1717 -1.8168 -10.8997 44 1 2.1225 0.8853 -9.7892 45 1 1.1666 -0.4456 -10.5741 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592212607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:33:16 Heat of formation + Delta-G solvation = -138.278142 kcal Electronic energy + Delta-G solvation = -23745.682848 eV Core-core repulsion = 20148.763168 eV Total energy + Delta-G solvation = -3596.919681 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39862 -38.81263 -38.57885 -36.41325 -35.77719 -33.68839 -33.29327 -30.68304 -29.42176 -26.50430 -25.90492 -25.09774 -23.86301 -22.59437 -21.70296 -21.28811 -19.72475 -19.17485 -18.12478 -16.73644 -16.40510 -16.25672 -15.86349 -15.74873 -15.09384 -14.93787 -14.81909 -14.34310 -14.30646 -13.56175 -13.36939 -13.02176 -12.91728 -12.73327 -12.45355 -12.16838 -11.90977 -11.88852 -11.64786 -11.47934 -11.35090 -11.25185 -10.97755 -10.84280 -10.70388 -10.68625 -10.66329 -10.57069 -10.51156 -10.20096 -9.92560 -8.94070 -8.56651 -8.37648 -8.28412 -6.00219 -4.02966 1.84402 2.62559 3.35869 3.41267 3.48752 3.79176 3.80651 3.99056 4.05923 4.34237 4.35747 4.50942 4.73580 4.78237 4.84894 5.00613 5.21320 5.25170 5.27075 5.32923 5.34332 5.44802 5.46899 5.54531 5.60595 5.67180 5.71246 5.82887 5.91152 5.95950 6.13103 6.16724 6.20338 6.39785 6.65152 6.86366 6.96571 7.15494 7.51394 7.56217 7.79115 8.02916 8.19567 8.50784 9.06337 9.30692 9.62578 11.07488 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.034232 B = 0.002274 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.740746 B =12310.080315 C =12362.642903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.028 3.972 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.548 6.548 14 N -0.748 5.748 15 C 0.119 3.881 16 C -0.128 4.128 17 C -0.118 4.118 18 C -0.100 4.100 19 C -0.083 4.083 20 C 0.504 3.496 21 O -0.511 6.511 22 O -0.512 6.512 23 C -0.119 4.119 24 C -0.147 4.147 25 C -0.120 4.120 26 H 0.012 0.988 27 H 0.030 0.970 28 H 0.093 0.907 29 H 0.260 0.740 30 H 0.395 0.605 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.411 0.589 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.297 1.370 -26.955 27.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.307 3.693 13 O -0.424 6.424 14 N -0.403 5.403 15 C -0.005 4.005 16 C -0.166 4.166 17 C -0.156 4.156 18 C -0.137 4.137 19 C -0.084 4.084 20 C 0.346 3.654 21 O -0.398 6.398 22 O -0.323 6.323 23 C -0.156 4.156 24 C -0.185 4.185 25 C -0.157 4.157 26 H 0.031 0.969 27 H 0.049 0.951 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.229 0.771 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.270 0.730 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.500 0.849 -26.723 26.741 hybrid contribution -0.327 -0.698 0.726 1.059 sum -0.827 0.151 -25.997 26.010 Atomic orbital electron populations 1.21734 0.96584 0.99766 1.00878 1.18872 0.94130 0.96810 0.89470 0.93062 1.21160 1.30800 1.12761 0.89046 0.90826 1.24954 0.95157 0.95112 0.99113 1.69872 1.37190 1.23207 1.23472 0.86452 0.78427 0.80267 0.82063 1.20680 1.21314 1.19774 1.21967 0.78467 0.84281 0.84569 1.90527 1.38048 1.26968 1.86847 1.46290 1.55553 1.32678 1.05739 1.21171 0.98954 0.96286 0.84100 1.21770 1.01362 0.99928 0.93546 1.21521 1.01487 0.99356 0.93269 1.21573 1.02303 0.98558 0.91292 1.21657 0.97279 0.90722 0.98748 1.22727 0.80227 0.91163 0.71252 1.90721 1.65802 1.38088 1.45188 1.84518 1.22968 1.39895 1.84957 1.22961 0.92383 1.04060 0.96177 1.22936 0.97552 1.01081 0.96888 1.22990 0.98744 0.99893 0.94063 0.96938 0.95062 0.88868 0.93013 0.77130 0.92464 0.92316 0.91187 0.91287 0.92189 0.91155 0.90119 0.90396 0.73047 0.89744 0.88390 0.90572 0.90050 0.88254 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.87 37.16 0.33 -2.73 16 2 C 0.03 0.72 2.64 -92.92 -0.25 0.47 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.50 -14.44 8.37 -34.44 -0.29 -14.72 16 5 H 0.07 2.26 6.75 -52.48 -0.35 1.90 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.46 11.32 55.43 0.63 -24.83 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.52 12.11 7.15 -10.98 -0.08 12.03 16 13 O -0.55 -14.79 15.46 5.56 0.09 -14.71 16 14 N -0.75 -13.18 5.45 -60.29 -0.33 -13.51 16 15 C 0.12 1.77 5.67 -4.04 -0.02 1.75 16 16 C -0.13 -1.31 5.33 -26.73 -0.14 -1.46 16 17 C -0.12 -1.08 4.92 -26.73 -0.13 -1.21 16 18 C -0.10 -0.72 4.60 -26.73 -0.12 -0.84 16 19 C -0.08 -0.63 0.90 -154.85 -0.14 -0.76 16 20 C 0.50 4.76 6.23 36.00 0.22 4.98 16 21 O -0.51 -6.34 16.63 -18.75 -0.31 -6.65 16 22 O -0.51 -3.80 13.30 -39.28 -0.52 -4.32 16 23 C -0.12 -0.86 6.39 -25.92 -0.17 -1.03 16 24 C -0.15 -0.93 7.79 -25.92 -0.20 -1.13 16 25 C -0.12 -0.69 7.22 -25.92 -0.19 -0.88 16 26 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.40 5.93 7.89 -40.82 -0.32 5.61 16 31 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.63 7.46 -51.92 -0.39 0.24 16 36 H 0.07 0.64 7.76 -51.93 -0.40 0.23 16 37 H 0.08 0.47 8.05 -51.92 -0.42 0.05 16 38 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 39 H 0.41 1.49 9.10 45.56 0.41 1.91 16 40 H 0.08 0.76 7.38 -51.93 -0.38 0.38 16 41 H 0.10 0.58 8.10 -51.93 -0.42 0.16 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.43 8.03 -51.93 -0.42 0.02 16 45 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -34.66 368.18 -7.94 -42.61 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.76 Total: 2.78 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -1.27 Total: -4.02 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.30 Total: -38.34 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.75 Total: -25.68 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.66 -7.94 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.671 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds