Wall clock time and date at job start Fri Apr 10 2020 20:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47219 * 2 1 4 4 C 1.50692 * 109.47487 * 239.99366 * 2 1 3 5 5 N 1.34778 * 120.00055 * 60.00254 * 4 2 1 6 6 O 1.21286 * 120.00519 * 239.99898 * 4 2 1 7 7 C 1.50709 * 109.46926 * 119.99360 * 2 1 3 8 8 O 1.21284 * 119.99560 * 120.00112 * 7 2 1 9 9 N 1.34773 * 120.00148 * 300.28124 * 7 2 1 10 10 C 1.46500 * 120.00026 * 179.72772 * 9 7 2 11 11 C 1.52998 * 109.47233 * 175.12505 * 10 9 7 12 12 N 1.46504 * 110.01384 * 303.89845 * 11 10 9 13 13 C 1.36935 * 120.00238 * 301.46100 * 12 11 10 14 14 H 1.08004 * 119.99665 * 354.60705 * 13 12 11 15 15 C 1.38803 * 120.00122 * 174.60616 * 13 12 11 16 16 N 1.31615 * 120.00137 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00108 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46871 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47367 * 120.00179 * 17 15 13 20 20 H 1.48504 * 109.47436 * 240.00395 * 17 15 13 21 21 C 1.54268 * 110.03472 * 182.45664 * 11 10 9 22 22 C 1.54883 * 104.19573 * 217.10494 * 21 11 10 23 23 C 1.54893 * 102.75251 * 37.94262 * 22 21 11 24 24 C 1.53881 * 110.03276 * 65.28891 * 11 10 9 25 25 H 1.08997 * 109.47364 * 300.00378 * 1 2 3 26 26 H 1.08997 * 109.47100 * 60.00689 * 1 2 3 27 27 H 1.08997 * 109.46942 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47218 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46818 * 299.99637 * 3 2 1 30 30 H 1.08997 * 109.47261 * 59.99560 * 3 2 1 31 31 H 0.97005 * 119.99542 * 359.97438 * 5 4 2 32 32 H 0.97001 * 120.00648 * 180.02562 * 5 4 2 33 33 H 0.96998 * 119.99634 * 359.71438 * 9 7 2 34 34 H 1.09005 * 109.46447 * 295.12419 * 10 9 7 35 35 H 1.09001 * 109.47165 * 55.11954 * 10 9 7 36 36 H 0.97002 * 119.99847 * 121.46211 * 12 11 10 37 37 H 0.97010 * 120.00288 * 179.97438 * 16 15 13 38 38 H 1.08996 * 110.48206 * 335.78366 * 21 11 10 39 39 H 1.09003 * 110.48427 * 98.42263 * 21 11 10 40 40 H 1.09002 * 110.75901 * 279.62520 * 22 21 11 41 41 H 1.08998 * 110.75872 * 156.25635 * 22 21 11 42 42 H 1.08994 * 110.48714 * 203.38509 * 23 22 21 43 43 H 1.08995 * 110.48639 * 80.73189 * 23 22 21 44 44 H 1.08999 * 110.03041 * 238.56963 * 24 11 10 45 45 H 1.08998 * 110.03252 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 7 1.7069 -0.2501 -2.4545 6 8 2.7297 -1.6966 -1.1190 7 6 2.0323 -0.7103 1.2306 8 8 2.7296 -1.6964 1.1194 9 7 1.7020 -0.2531 2.4546 10 6 2.1854 -0.9471 3.6509 11 6 1.7733 -0.1618 4.8976 12 7 2.2722 1.2130 4.8119 13 6 3.6151 1.4473 4.6821 14 1 4.3138 0.6252 4.7304 15 6 4.0783 2.7414 4.4884 16 7 3.2269 3.7433 4.4300 17 14 5.9102 3.0609 4.3107 18 1 6.6487 1.7765 4.4116 19 1 6.1783 3.6829 2.9892 20 1 6.3599 3.9770 5.3895 21 6 2.3287 -0.8486 6.1624 22 6 1.2093 -0.6648 7.2170 23 6 -0.0817 -0.8439 6.3801 24 6 0.2408 -0.1588 5.0360 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.1489 0.5383 -2.5435 32 1 2.0299 -0.7076 -3.2465 33 1 1.1444 0.5356 2.5435 34 1 1.7519 -1.9464 3.6911 35 1 3.2721 -1.0236 3.6123 36 1 1.6512 1.9574 4.8470 37 1 3.5507 4.6478 4.2951 38 1 2.5059 -1.9076 5.9747 39 1 3.2460 -0.3597 6.4904 40 1 1.2508 0.3326 7.6545 41 1 1.2776 -1.4301 7.9902 42 1 -0.9233 -0.3515 6.8669 43 1 -0.2937 -1.9021 6.2275 44 1 -0.1317 0.8656 5.0403 45 1 -0.2094 -0.7164 4.2148 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753665298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:35:00 Heat of formation + Delta-G solvation = -77.512924 kcal Electronic energy + Delta-G solvation = -25933.092539 eV Core-core repulsion = 22371.100587 eV Total energy + Delta-G solvation = -3561.991952 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.44551 -38.79692 -37.67300 -34.95735 -33.89971 -33.21980 -32.88962 -30.53940 -28.26048 -27.73982 -27.41535 -24.74089 -24.01575 -23.19863 -21.32313 -20.21375 -19.14057 -18.57107 -17.67784 -16.95656 -16.44186 -15.98802 -15.46923 -15.04936 -14.94031 -14.61138 -14.13598 -14.00399 -13.88745 -13.55739 -13.32400 -12.89269 -12.64385 -12.46666 -12.30312 -12.11145 -11.98945 -11.77183 -11.44293 -11.18183 -11.08089 -10.78512 -10.72406 -10.62814 -10.49192 -10.21527 -10.13031 -9.83205 -9.75773 -9.64028 -9.58270 -8.97058 -8.82841 -8.28744 -7.00595 -5.81197 -3.09402 2.78398 3.22976 3.34729 3.41170 3.49210 3.51308 3.87574 4.56829 4.72586 4.76906 4.99145 5.10236 5.12502 5.21857 5.25664 5.43966 5.56331 5.60427 5.69471 5.72122 5.76987 5.82232 5.95083 5.96642 6.00947 6.09535 6.20008 6.28205 6.29111 6.31833 6.46379 6.58291 6.64186 6.78456 6.82898 6.85083 7.03534 7.19051 7.35304 7.72697 8.16624 8.37613 8.40513 8.88059 9.49948 10.03432 10.39134 11.40804 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.006183 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.512629 B = 4527.190315 C = 5996.606378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 C -0.138 4.138 4 C 0.526 3.474 5 N -0.860 5.860 6 O -0.496 6.496 7 C 0.518 3.482 8 O -0.513 6.513 9 N -0.699 5.699 10 C 0.122 3.878 11 C 0.189 3.811 12 N -0.710 5.710 13 C -0.227 4.227 14 H 0.070 0.930 15 C -0.009 4.009 16 N -0.932 5.932 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.293 1.293 20 H -0.293 1.293 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.125 4.125 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.397 0.603 32 H 0.399 0.601 33 H 0.399 0.601 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.383 0.617 37 H 0.253 0.747 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.831 -4.474 -6.812 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C -0.195 4.195 4 C 0.308 3.692 5 N -0.426 5.426 6 O -0.367 6.367 7 C 0.300 3.700 8 O -0.388 6.388 9 N -0.350 5.350 10 C -0.004 4.004 11 C 0.097 3.903 12 N -0.351 5.351 13 C -0.359 4.359 14 H 0.088 0.912 15 C -0.205 4.205 16 N -0.580 5.580 17 Si 0.730 3.270 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.220 1.220 21 C -0.172 4.172 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.163 4.163 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.226 0.774 32 H 0.230 0.770 33 H 0.234 0.766 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.218 0.782 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.666 -5.842 -6.620 13.092 hybrid contribution 0.533 1.287 -0.497 1.479 sum -9.133 -4.555 -7.118 12.443 Atomic orbital electron populations 1.21825 0.90963 1.03090 1.03539 1.20882 0.98404 0.98095 0.93671 1.21835 1.02681 0.91336 1.03691 1.20010 0.80283 0.84422 0.84486 1.43840 1.56880 1.34065 1.07791 1.90880 1.35166 1.24772 1.85925 1.19677 0.81337 0.84897 0.84064 1.90796 1.36413 1.25552 1.86015 1.45630 1.53003 1.31608 1.04741 1.21846 0.99918 0.93871 0.84762 1.20467 0.91136 0.87164 0.91558 1.42541 1.05449 0.99866 1.87292 1.19137 0.83698 0.92427 1.40600 0.91247 1.24639 0.97151 0.95841 1.02825 1.69654 1.32412 0.98763 1.57211 0.86247 0.85824 0.77770 0.77202 1.20581 1.22009 1.22011 1.22822 0.99286 0.99133 0.95962 1.22384 0.94733 1.01136 0.97195 1.22300 0.97753 0.99746 0.96027 1.22429 0.95989 1.00856 0.97068 0.90602 0.91301 0.91735 0.91393 0.91634 0.89786 0.77447 0.77007 0.76603 0.93280 0.91572 0.78174 0.93730 0.92916 0.90313 0.91424 0.92769 0.92403 0.92303 0.91344 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.26 37.16 0.31 -1.09 16 2 C -0.10 -1.47 0.72 -156.81 -0.11 -1.58 16 3 C -0.14 -1.83 8.27 37.16 0.31 -1.52 16 4 C 0.53 7.99 6.74 -10.99 -0.07 7.92 16 5 N -0.86 -8.23 8.66 31.22 0.27 -7.96 16 6 O -0.50 -10.31 15.02 -18.96 -0.28 -10.60 16 7 C 0.52 9.72 6.47 -10.98 -0.07 9.65 16 8 O -0.51 -12.02 14.18 -18.96 -0.27 -12.29 16 9 N -0.70 -12.29 4.88 -60.29 -0.29 -12.58 16 10 C 0.12 2.29 3.99 -4.04 -0.02 2.27 16 11 C 0.19 3.38 0.68 -130.70 -0.09 3.29 16 12 N -0.71 -15.54 4.76 -46.19 -0.22 -15.76 16 13 C -0.23 -5.80 8.39 -15.06 -0.13 -5.92 16 14 H 0.07 1.82 7.23 -52.48 -0.38 1.44 16 15 C -0.01 -0.24 5.50 -17.44 -0.10 -0.33 16 16 N -0.93 -26.03 13.06 55.49 0.72 -25.30 16 17 Si 0.90 22.10 29.55 -169.99 -5.02 17.08 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 C -0.13 -2.27 5.94 -25.07 -0.15 -2.42 16 22 C -0.12 -1.73 6.91 -24.74 -0.17 -1.91 16 23 C -0.12 -1.61 6.83 -25.07 -0.17 -1.78 16 24 C -0.13 -1.86 5.80 -25.61 -0.15 -2.00 16 25 H 0.08 0.72 7.55 -51.93 -0.39 0.33 16 26 H 0.07 0.49 7.56 -51.93 -0.39 0.10 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.62 7.57 -51.93 -0.39 0.23 16 30 H 0.08 1.18 7.57 -51.93 -0.39 0.79 16 31 H 0.40 2.50 7.67 -40.82 -0.31 2.19 16 32 H 0.40 3.33 8.93 -40.82 -0.36 2.97 16 33 H 0.40 6.51 6.83 -40.82 -0.28 6.23 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.45 7.49 -51.93 -0.39 1.06 16 36 H 0.38 8.94 7.28 -40.82 -0.30 8.65 16 37 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.05 0.84 7.85 -51.93 -0.41 0.43 16 39 H 0.08 1.55 7.12 -51.93 -0.37 1.18 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 1.04 7.44 -51.93 -0.39 0.65 16 45 H 0.06 0.84 7.54 -51.93 -0.39 0.44 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -33.90 356.88 -7.57 -41.47 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -7.24 Total: 15.97 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -0.61 Total: 4.58 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.48 Total: -61.60 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.55 Total: -22.88 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.90 -7.57 -41.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753665298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.041 kcal (2) G-P(sol) polarization free energy of solvation -33.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds