Wall clock time and date at job start Fri Apr 10 2020 20:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47181 * 2 1 4 4 H 1.09001 * 109.47835 * 55.02616 * 3 2 1 5 5 C 1.53093 * 109.47777 * 175.05597 * 3 2 1 6 6 C 1.53183 * 109.15859 * 177.59091 * 5 3 2 7 7 H 1.09000 * 109.61372 * 62.93684 * 6 5 3 8 8 C 1.53000 * 109.54019 * 183.15226 * 6 5 3 9 9 C 1.50703 * 109.46912 * 184.55910 * 8 6 5 10 10 O 1.21278 * 119.99985 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00161 * 180.02562 * 9 8 6 12 12 C 1.46496 * 120.00271 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47194 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.46974 * 299.99572 * 13 12 11 15 15 C 1.53002 * 109.47415 * 59.99942 * 13 12 11 16 16 C 1.50703 * 109.47084 * 179.97438 * 13 12 11 17 17 H 1.07996 * 119.99751 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99788 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99743 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47171 * 89.99940 * 20 18 16 22 22 H 1.48508 * 109.46868 * 210.00073 * 20 18 16 23 23 H 1.48502 * 109.47066 * 329.99429 * 20 18 16 24 24 C 1.53173 * 109.03878 * 303.02312 * 6 5 3 25 25 C 1.53091 * 109.16545 * 56.97740 * 24 6 5 26 26 O 1.42901 * 109.41869 * 302.39559 * 25 24 6 27 27 H 1.09005 * 109.46856 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47095 * 299.99825 * 1 2 3 29 29 H 1.09005 * 109.46861 * 59.99951 * 1 2 3 30 30 H 1.09005 * 109.47201 * 240.00020 * 2 1 3 31 31 H 1.08995 * 109.47153 * 120.00519 * 2 1 3 32 32 H 1.09003 * 109.52331 * 57.68874 * 5 3 2 33 33 H 1.08995 * 109.52568 * 297.50039 * 5 3 2 34 34 H 1.09002 * 109.47398 * 304.55987 * 8 6 5 35 35 H 1.09001 * 109.47194 * 64.56168 * 8 6 5 36 36 H 0.97005 * 119.99463 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.47021 * 299.99722 * 12 11 9 38 38 H 1.09001 * 109.47001 * 59.99554 * 12 11 9 39 39 H 1.09000 * 109.46866 * 60.00225 * 14 13 12 40 40 H 1.09001 * 109.46611 * 180.02562 * 14 13 12 41 41 H 1.08988 * 109.47066 * 300.00373 * 14 13 12 42 42 H 1.08992 * 109.47063 * 59.99950 * 15 13 12 43 43 H 1.08996 * 109.47407 * 180.02562 * 15 13 12 44 44 H 1.09004 * 109.46733 * 299.99664 * 15 13 12 45 45 H 0.97000 * 120.00354 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.52013 * 176.88882 * 24 6 5 47 47 H 1.08998 * 109.52147 * 297.07592 * 24 6 5 48 48 H 1.09004 * 109.47713 * 62.37502 * 25 24 6 49 49 H 1.09001 * 109.48131 * 182.39292 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6059 1.9816 0.8421 5 6 3.5659 1.4445 0.1244 6 6 4.0735 2.8885 0.0631 7 1 3.6814 3.4504 0.9108 8 6 5.6028 2.8957 0.1076 9 6 6.0971 4.3184 0.1602 10 8 5.3042 5.2361 0.1614 11 7 7.4202 4.5709 0.2049 12 6 7.9007 5.9539 0.2565 13 6 9.4300 5.9612 0.3010 14 6 9.9076 5.2086 1.5446 15 6 9.9799 5.2767 -0.9521 16 6 9.9242 7.3839 0.3535 17 1 9.2182 8.2011 0.3546 18 6 11.2778 7.6421 0.4001 19 7 12.1376 6.6469 0.3993 20 14 11.8905 9.4056 0.4660 21 1 12.0119 9.8349 1.8823 22 1 13.2182 9.4933 -0.1935 23 1 10.9284 10.2904 -0.2389 24 6 3.5957 3.5310 -1.2427 25 6 2.0687 3.4484 -1.3143 26 8 1.6620 2.0816 -1.2210 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.9989 0.8711 -0.6953 33 1 3.8545 0.9970 1.0754 34 1 5.9431 2.3599 0.9938 35 1 5.9946 2.4077 -0.7848 36 1 8.0543 3.8369 0.2035 37 1 7.5600 6.4902 -0.6291 38 1 7.5092 6.4414 1.1494 39 1 9.5501 4.1796 1.5061 40 1 10.9972 5.2142 1.5764 41 1 9.5159 5.6962 2.4371 42 1 9.6397 5.8129 -1.8379 43 1 11.0694 5.2815 -0.9202 44 1 9.6225 4.2477 -0.9904 45 1 13.0899 6.8286 0.4317 46 1 3.9057 4.5757 -1.2693 47 1 4.0293 2.9998 -2.0900 48 1 1.6351 4.0138 -0.4894 49 1 1.7261 3.8660 -2.2610 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457987708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:33:58 Heat of formation + Delta-G solvation = -121.075969 kcal Electronic energy + Delta-G solvation = -24830.443545 eV Core-core repulsion = 21370.102901 eV Total energy + Delta-G solvation = -3460.340644 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.209 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.09305 -38.95589 -36.47855 -34.61123 -34.13474 -33.27668 -30.98034 -29.94237 -28.93795 -25.74969 -25.68282 -25.07605 -24.04155 -23.36809 -21.33545 -20.33704 -19.73505 -18.77133 -16.93705 -16.53628 -16.03480 -15.80263 -15.44436 -15.08148 -14.74544 -14.64788 -14.26739 -13.92136 -13.83068 -13.36863 -13.06290 -12.91773 -12.80653 -12.51148 -12.19927 -11.93462 -11.90961 -11.65889 -11.38139 -11.28058 -11.21361 -11.18129 -10.92157 -10.87549 -10.70771 -10.55867 -10.40000 -10.30331 -10.21581 -9.65530 -9.64961 -9.44756 -9.13636 -8.80066 -8.45943 -8.30989 -6.03860 -4.13935 3.06466 3.26868 3.33918 3.37673 3.66650 3.73457 4.37985 4.48734 4.61656 4.73178 4.80389 4.93993 5.03838 5.13999 5.21814 5.22855 5.27870 5.36094 5.42689 5.49501 5.51626 5.66931 5.69925 5.72175 5.82242 5.84425 5.89858 6.00356 6.09754 6.22618 6.29633 6.31315 6.34154 6.49096 6.77007 6.80193 6.91793 6.99730 7.03968 7.17068 7.33689 7.53555 7.67648 7.98942 8.05562 8.14703 8.36883 8.71938 8.87015 9.51922 10.97522 Molecular weight = 297.21amu Principal moments of inertia in cm(-1) A = 0.042234 B = 0.002538 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.811799 B =11030.159847 C =11343.105547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.056 0.944 5 C -0.146 4.146 6 C -0.071 4.071 7 H 0.078 0.922 8 C -0.137 4.137 9 C 0.503 3.497 10 O -0.552 6.552 11 N -0.718 5.718 12 C 0.132 3.868 13 C 0.055 3.945 14 C -0.131 4.131 15 C -0.130 4.130 16 C -0.505 4.505 17 H 0.057 0.943 18 C 0.065 3.935 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.156 4.156 25 C 0.064 3.936 26 O -0.382 6.382 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.397 0.603 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.006 0.994 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.006 0.994 45 H 0.260 0.740 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.049 0.951 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.197 -13.511 -0.683 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.074 0.926 5 C -0.184 4.184 6 C -0.090 4.090 7 H 0.096 0.904 8 C -0.178 4.178 9 C 0.289 3.711 10 O -0.431 6.431 11 N -0.369 5.369 12 C 0.009 3.991 13 C 0.054 3.946 14 C -0.188 4.188 15 C -0.188 4.188 16 C -0.544 4.544 17 H 0.075 0.925 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.193 4.193 25 C -0.013 4.013 26 O -0.301 6.301 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.232 0.768 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.025 0.975 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.104 0.896 44 H 0.025 0.975 45 H 0.070 0.930 46 H 0.114 0.886 47 H 0.082 0.918 48 H 0.067 0.933 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.639 -12.958 -0.826 21.106 hybrid contribution 1.030 0.780 0.277 1.321 sum -15.609 -12.178 -0.548 19.805 Atomic orbital electron populations 1.21720 0.95385 1.01345 1.02274 1.21550 0.96610 0.94579 1.02614 1.22102 0.93470 0.93780 0.87325 0.92608 1.22306 0.96216 0.97126 1.02744 1.20902 0.93481 0.95342 0.99226 0.90361 1.21733 0.96814 0.95116 1.04089 1.20571 0.82826 0.91105 0.76600 1.90617 1.54907 1.46914 1.50698 1.46361 1.06391 1.10816 1.73282 1.21688 0.97295 0.79751 1.00319 1.18361 0.87264 0.96121 0.92811 1.21829 1.04494 0.94872 0.97645 1.21825 1.04517 0.94960 0.97513 1.20984 0.91755 0.90951 1.50708 0.92478 1.24887 0.96802 0.97069 0.94819 1.69799 1.01898 1.30208 1.50565 0.86571 0.78130 0.85021 0.78148 1.20712 1.21256 1.19914 1.22368 0.96010 1.03825 0.97127 1.22556 0.94380 0.82496 1.01821 1.87883 1.78688 1.25094 1.38439 0.92920 0.93005 0.91940 0.91168 0.90759 0.90960 0.90965 0.89174 0.89192 0.76772 0.92833 0.92858 0.97506 0.89590 0.95488 0.95465 0.89614 0.97510 0.93002 0.88568 0.91769 0.93313 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.81 37.16 0.36 -0.78 16 2 C -0.12 -0.92 5.64 -26.73 -0.15 -1.07 16 3 C 0.09 0.88 2.64 -26.68 -0.07 0.81 16 4 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 5 C -0.15 -1.36 4.71 -26.59 -0.13 -1.49 16 6 C -0.07 -0.81 1.92 -90.44 -0.17 -0.98 16 7 H 0.08 1.00 7.96 -51.93 -0.41 0.59 16 8 C -0.14 -1.61 5.18 -27.88 -0.14 -1.75 16 9 C 0.50 8.21 7.57 -10.98 -0.08 8.12 16 10 O -0.55 -10.78 13.98 5.56 0.08 -10.71 16 11 N -0.72 -12.38 4.96 -60.30 -0.30 -12.68 16 12 C 0.13 2.77 4.50 -4.05 -0.02 2.76 16 13 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 14 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 15 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 16 C -0.51 -13.18 8.01 -34.44 -0.28 -13.46 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 19 N -0.89 -23.51 9.35 55.43 0.52 -22.99 16 20 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 24 C -0.16 -1.90 5.12 -26.59 -0.14 -2.04 16 25 C 0.06 0.71 6.84 37.20 0.25 0.96 16 26 O -0.38 -4.40 9.94 -35.23 -0.35 -4.75 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.54 7.82 -51.93 -0.41 0.14 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.40 6.18 6.16 -40.82 -0.25 5.93 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 40 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 41 H 0.03 0.60 8.14 -51.94 -0.42 0.17 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 44 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 45 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 46 H 0.10 1.41 6.03 -51.93 -0.31 1.10 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -28.12 373.02 -8.61 -36.73 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -9.03 Total: 4.46 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -0.13 Total: -11.34 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.22 Total: -35.67 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.27 Total: -15.45 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.12 -8.61 -36.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457987708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.344 kcal (2) G-P(sol) polarization free energy of solvation -28.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds