Wall clock time and date at job start Fri Apr 10 2020 20:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47070 * 2 1 4 4 C 1.52998 * 109.47063 * 239.99500 * 2 1 3 5 5 C 1.50702 * 109.46998 * 65.00184 * 4 2 1 6 6 H 1.07996 * 120.00094 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00041 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99871 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00181 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47078 * 89.99859 * 9 7 5 11 11 H 1.48501 * 109.47276 * 209.99847 * 9 7 5 12 12 H 1.48494 * 109.46947 * 329.99970 * 9 7 5 13 13 C 1.53006 * 109.47229 * 119.99434 * 2 1 3 14 14 N 1.46901 * 109.47256 * 295.00630 * 13 2 1 15 15 C 1.47006 * 110.99351 * 293.94947 * 14 13 2 16 16 C 1.53103 * 109.29992 * 177.60187 * 15 14 13 17 17 H 1.09002 * 109.50857 * 296.95245 * 16 15 14 18 18 C 1.53001 * 109.51211 * 176.85565 * 16 15 14 19 19 O 1.43040 * 109.23631 * 56.88189 * 16 15 14 20 20 C 1.42922 * 113.71607 * 301.44237 * 19 16 15 21 21 C 1.53076 * 109.54648 * 178.72640 * 20 19 16 22 22 C 1.53113 * 109.16117 * 63.08717 * 21 20 19 23 23 O 1.42903 * 109.40883 * 57.47327 * 22 21 20 24 24 C 1.42911 * 114.13447 * 298.82097 * 23 22 21 25 25 C 1.53086 * 109.51231 * 298.47153 * 20 19 16 26 26 C 1.47031 * 111.00016 * 170.32772 * 14 13 2 27 27 H 1.09003 * 109.47416 * 299.99909 * 1 2 3 28 28 H 1.08996 * 109.47565 * 60.00599 * 1 2 3 29 29 H 1.09001 * 109.47605 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46999 * 184.99702 * 4 2 1 31 31 H 1.08998 * 109.47257 * 304.99739 * 4 2 1 32 32 H 0.97007 * 120.00054 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.46952 * 174.99605 * 13 2 1 34 34 H 1.09002 * 109.46519 * 54.99780 * 13 2 1 35 35 H 1.09005 * 109.50211 * 57.65495 * 15 14 13 36 36 H 1.09005 * 109.50470 * 297.55191 * 15 14 13 37 37 H 1.08998 * 109.46807 * 60.09607 * 18 16 15 38 38 H 1.09001 * 109.47128 * 180.09237 * 18 16 15 39 39 H 1.09001 * 109.47318 * 300.09743 * 18 16 15 40 40 H 1.08996 * 109.51951 * 182.99351 * 21 20 19 41 41 H 1.08998 * 109.52180 * 303.18232 * 21 20 19 42 42 H 1.09003 * 109.48368 * 297.49413 * 22 21 20 43 43 H 1.08994 * 109.48854 * 177.45751 * 22 21 20 44 44 H 1.08993 * 109.48817 * 301.22343 * 24 23 22 45 45 H 1.08994 * 109.49842 * 181.17746 * 24 23 22 46 46 H 1.08999 * 109.52810 * 56.81799 * 25 20 19 47 47 H 1.09003 * 109.52265 * 177.00987 * 25 20 19 48 48 H 1.09000 * 109.50817 * 302.17340 * 26 14 13 49 49 H 1.09001 * 109.51409 * 62.31049 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0569 -2.4766 6 1 1.0799 0.9740 -2.3758 7 6 1.9932 -0.4019 -3.7282 8 7 2.6772 -1.5185 -3.8509 9 14 1.4984 0.5624 -5.2497 10 1 2.5630 1.5427 -5.5823 11 1 1.3122 -0.3718 -6.3889 12 1 0.2267 1.2827 -4.9873 13 6 2.0400 -0.7211 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.3345 1.3384 2.4894 16 6 1.8573 2.1197 3.7166 17 1 0.7901 2.3225 3.6267 18 6 2.6225 3.4413 3.8104 19 8 2.0985 1.3425 4.8930 20 6 1.4498 0.0690 4.8837 21 6 1.7962 -0.6916 6.1661 22 6 1.2519 0.0805 7.3711 23 8 -0.1588 0.2556 7.2250 24 6 -0.5381 1.0034 6.0677 25 6 -0.0663 0.2680 4.8103 26 6 1.9198 -0.7331 3.6687 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1263 -0.7995 -1.2055 31 1 1.6054 -1.7199 -1.2950 32 1 2.9245 -1.8415 -4.7316 33 1 3.1263 -0.7994 1.2056 34 1 1.6053 -1.7197 1.2953 35 1 2.1017 1.9023 1.5860 36 1 3.4114 1.1820 2.5538 37 1 2.4396 4.0314 2.9125 38 1 2.2834 3.9961 4.6852 39 1 3.6896 3.2377 3.9003 40 1 1.3448 -1.6832 6.1346 41 1 2.8787 -0.7858 6.2526 42 1 1.7355 1.0558 7.4265 43 1 1.4562 -0.4790 8.2839 44 1 -0.0777 1.9906 6.1057 45 1 -1.6226 1.1088 6.0419 46 1 -0.3140 0.8588 3.9284 47 1 -0.5586 -0.7026 4.7496 48 1 1.3819 -1.6803 3.6276 49 1 2.9897 -0.9247 3.7508 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602645708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:35:19 Heat of formation + Delta-G solvation = -106.320383 kcal Electronic energy + Delta-G solvation = -26049.004968 eV Core-core repulsion = 22589.304174 eV Total energy + Delta-G solvation = -3459.700794 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.209 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.78918 -38.34437 -36.57089 -34.16144 -33.88821 -32.00790 -31.28064 -30.83765 -27.60353 -26.94569 -26.42820 -24.37022 -23.89547 -22.89267 -22.00381 -20.96970 -19.41048 -18.89619 -16.76685 -16.49567 -16.15605 -16.10638 -15.75014 -15.25615 -14.87654 -14.80344 -14.48355 -14.32489 -13.77787 -13.65816 -12.96062 -12.80174 -12.70517 -12.47649 -12.31740 -12.23699 -12.19422 -11.81554 -11.69905 -11.46838 -11.40751 -11.26815 -11.03926 -10.88750 -10.75812 -10.49910 -10.37737 -10.30366 -10.26766 -9.77866 -9.63922 -9.40963 -9.14438 -8.93293 -8.34617 -8.11555 -5.99458 -4.00763 3.31320 3.37885 3.40970 3.50917 3.75192 3.94199 4.46455 4.55346 4.63045 4.65165 4.86360 4.90656 5.07905 5.12504 5.19177 5.23997 5.30890 5.36326 5.41839 5.47257 5.52364 5.53678 5.60822 5.63595 5.69816 5.75353 5.80782 5.87500 5.89975 5.95953 6.01728 6.12203 6.13170 6.16626 6.35087 6.49225 6.64274 6.95548 7.05185 7.06691 7.15266 7.18124 7.28450 7.34097 7.66910 7.82519 8.00414 8.44228 9.05526 9.62772 11.12057 Molecular weight = 297.21amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.003262 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.703481 B = 8582.300909 C = 8806.071288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.061 3.939 14 N -0.530 5.530 15 C 0.022 3.978 16 C 0.088 3.912 17 H 0.067 0.933 18 C -0.143 4.143 19 O -0.374 6.374 20 C 0.124 3.876 21 C -0.140 4.140 22 C 0.066 3.934 23 O -0.386 6.386 24 C 0.064 3.936 25 C -0.170 4.170 26 C 0.032 3.968 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.012 0.988 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.052 0.948 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.375 5.006 21.230 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.066 4.066 14 N -0.254 5.254 15 C -0.106 4.106 16 C 0.030 3.970 17 H 0.085 0.915 18 C -0.201 4.201 19 O -0.294 6.294 20 C 0.084 3.916 21 C -0.178 4.178 22 C -0.011 4.011 23 O -0.305 6.305 24 C -0.012 4.012 25 C -0.208 4.208 26 C -0.097 4.097 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.101 0.899 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.825 4.956 21.345 22.095 hybrid contribution 0.851 0.166 -1.512 1.743 sum -1.974 5.122 19.833 20.579 Atomic orbital electron populations 1.21573 0.95709 1.00535 1.00073 1.21219 0.95965 0.99002 0.93697 0.92650 1.19121 0.95868 0.95578 0.90443 1.21217 1.34606 1.08280 0.90959 0.92593 1.25021 0.95335 0.95079 0.99101 1.69969 1.39069 1.21226 1.23394 0.86632 0.78927 0.79810 0.82866 1.20765 1.21294 1.19872 1.22349 0.97710 0.97210 0.89338 1.62265 1.57641 1.03561 1.01905 1.22851 0.96637 0.91844 0.99308 1.22183 0.99512 0.90936 0.84345 0.91475 1.21740 1.00817 0.95019 1.02515 1.87944 1.72691 1.28521 1.40241 1.21383 0.91864 0.84101 0.94232 1.22159 1.02400 0.99349 0.93902 1.22478 0.81593 0.99752 0.97231 1.87889 1.22755 1.75155 1.44733 1.22544 0.99970 0.94153 0.84578 1.22631 0.95712 1.02990 0.99428 1.22695 0.99384 0.97364 0.90246 0.94084 0.92745 0.94191 0.97010 0.96592 0.93090 0.95254 0.91184 0.88927 0.94340 0.90766 0.91923 0.91974 0.89677 0.90234 0.92469 0.89120 0.92936 0.89132 0.89095 0.90315 0.89935 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.89 37.16 0.33 -1.98 16 2 C -0.08 -1.60 2.26 -90.62 -0.20 -1.81 16 3 H 0.06 1.12 6.29 -51.93 -0.33 0.79 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.22 8.41 -34.44 -0.29 -14.51 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.06 1.04 4.35 -3.82 -0.02 1.03 16 14 N -0.53 -7.65 3.62 -234.35 -0.85 -8.50 16 15 C 0.02 0.30 4.72 -3.71 -0.02 0.28 16 16 C 0.09 1.03 3.03 -26.68 -0.08 0.95 16 17 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 18 C -0.14 -1.41 9.57 37.16 0.36 -1.06 16 19 O -0.37 -4.59 8.90 -35.23 -0.31 -4.91 16 20 C 0.12 1.41 0.69 -90.54 -0.06 1.35 16 21 C -0.14 -1.36 5.15 -26.63 -0.14 -1.50 16 22 C 0.07 0.64 6.70 37.22 0.25 0.89 16 23 O -0.39 -4.42 10.76 -35.23 -0.38 -4.80 16 24 C 0.06 0.67 6.70 37.22 0.25 0.91 16 25 C -0.17 -1.87 4.51 -26.63 -0.12 -2.00 16 26 C 0.03 0.40 4.35 -3.76 -0.02 0.39 16 27 H 0.04 0.69 7.75 -51.93 -0.40 0.29 16 28 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 34 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 35 H 0.09 1.34 6.27 -51.93 -0.33 1.02 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.57 7.83 -51.93 -0.41 0.17 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.55 7.82 -51.93 -0.41 0.14 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 1.09 6.08 -51.93 -0.32 0.77 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 49 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -29.95 367.55 -9.41 -39.36 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -9.14 Total: -2.11 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 0.02 Total: -14.99 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.11 Total: -34.66 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.69 Total: -9.71 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.95 -9.41 -39.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602645708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.963 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds