Wall clock time and date at job start Fri Apr 10 2020 20:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47086 * 2 1 4 4 H 1.09003 * 109.47245 * 54.33238 * 3 2 1 5 5 C 1.50701 * 109.47080 * 174.33435 * 3 2 1 6 6 O 1.21283 * 119.99897 * 114.73767 * 5 3 2 7 7 N 1.34769 * 120.00118 * 294.73153 * 5 3 2 8 8 C 1.46932 * 120.63086 * 356.94131 * 7 5 3 9 9 C 1.53199 * 108.77591 * 126.36379 * 8 7 5 10 10 C 1.53044 * 109.30926 * 54.63674 * 9 8 7 11 11 C 1.53037 * 109.53903 * 298.63329 * 10 9 8 12 12 H 1.08996 * 109.52478 * 301.40059 * 11 10 9 13 13 C 1.53001 * 109.49735 * 181.31792 * 11 10 9 14 14 N 1.46497 * 109.47350 * 65.16070 * 13 11 10 15 15 C 1.36931 * 120.00057 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00243 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00017 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00160 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00351 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47325 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.46866 * 299.99856 * 19 17 15 22 22 H 1.48505 * 109.46993 * 59.99575 * 19 17 15 23 23 C 1.46931 * 120.63511 * 176.91549 * 7 5 3 24 24 N 1.46904 * 109.47166 * 294.33416 * 3 2 1 25 25 C 1.46894 * 110.99907 * 320.74590 * 24 3 2 26 26 C 1.46907 * 110.99919 * 84.70018 * 24 3 2 27 27 H 1.08993 * 109.47502 * 314.72325 * 1 2 3 28 28 H 1.09004 * 109.47069 * 74.72818 * 1 2 3 29 29 H 1.08998 * 109.47286 * 194.72027 * 1 2 3 30 30 H 1.09003 * 109.46908 * 240.00121 * 2 1 3 31 31 H 1.08993 * 109.46871 * 120.00555 * 2 1 3 32 32 H 1.08997 * 109.59022 * 246.15365 * 8 7 5 33 33 H 1.09010 * 109.58297 * 6.58326 * 8 7 5 34 34 H 1.08994 * 109.49961 * 174.58821 * 9 8 7 35 35 H 1.09002 * 109.49560 * 294.65416 * 9 8 7 36 36 H 1.09000 * 109.46001 * 178.61446 * 10 9 8 37 37 H 1.08998 * 109.45762 * 58.65777 * 10 9 8 38 38 H 1.09004 * 109.46923 * 305.16456 * 13 11 10 39 39 H 1.08996 * 109.47170 * 185.16558 * 13 11 10 40 40 H 0.96999 * 119.99897 * 0.02562 * 14 13 11 41 41 H 0.97007 * 119.99729 * 0.02562 * 18 17 15 42 42 H 1.08999 * 109.58463 * 113.84253 * 23 7 5 43 43 H 1.08996 * 109.58079 * 353.42071 * 23 7 5 44 44 H 1.08999 * 109.47241 * 60.00344 * 25 24 3 45 45 H 1.09002 * 109.47179 * 179.97438 * 25 24 3 46 46 H 1.09004 * 109.47137 * 299.99702 * 25 24 3 47 47 H 1.09001 * 109.46816 * 64.14039 * 26 24 3 48 48 H 1.08993 * 109.46580 * 184.14115 * 26 24 3 49 49 H 1.08999 * 109.46721 * 304.14464 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5962 1.9848 0.8349 5 6 3.5405 1.4448 0.1403 6 8 4.2337 1.8536 -0.7671 7 7 4.1120 0.9927 1.2740 8 6 3.2845 0.5569 2.4073 9 6 3.7049 -0.8606 2.8084 10 6 5.2102 -0.8833 3.0838 11 6 5.9690 -0.4960 1.8125 12 1 5.7161 -1.1906 1.0115 13 6 7.4745 -0.5509 2.0796 14 7 7.8712 -1.9335 2.3574 15 6 9.1806 -2.2289 2.6279 16 1 9.9210 -1.4427 2.6360 17 6 9.5565 -3.5390 2.8906 18 7 8.6543 -4.4973 2.8802 19 14 11.3427 -3.9420 3.2603 20 1 11.4808 -5.4002 3.5048 21 1 12.1879 -3.5514 2.1034 22 1 11.7793 -3.1946 4.4670 23 6 5.5743 0.9256 1.4000 24 7 1.6651 2.0944 -1.2620 25 6 1.8050 1.1691 -2.3943 26 6 0.3014 2.6360 -1.1900 27 1 -0.3634 0.7231 0.7301 28 1 -0.3633 0.2707 -0.9914 29 1 -0.3634 -0.9939 0.2611 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.4319 1.2337 3.2489 33 1 2.2345 0.5576 2.1146 34 1 3.1660 -1.1591 3.7076 35 1 3.4722 -1.5519 1.9984 36 1 5.5077 -1.8852 3.3933 37 1 5.4448 -0.1737 3.8772 38 1 7.7140 0.0755 2.9390 39 1 8.0123 -0.1875 1.2040 40 1 7.2062 -2.6396 2.3498 41 1 7.7267 -4.2880 2.6886 42 1 5.9084 1.6325 2.1595 43 1 6.0351 1.1695 0.4428 44 1 1.1569 0.3063 -2.2407 45 1 1.5208 1.6771 -3.3158 46 1 2.8408 0.8373 -2.4665 47 1 0.2623 3.4225 -0.4364 48 1 0.0225 3.0476 -2.1598 49 1 -0.3920 1.8394 -0.9201 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714085607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:34:23 Heat of formation + Delta-G solvation = -6.776006 kcal Electronic energy + Delta-G solvation = -25684.270837 eV Core-core repulsion = 22261.179362 eV Total energy + Delta-G solvation = -3423.091475 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77482 -38.56520 -37.17191 -35.21492 -33.24910 -32.32925 -31.74213 -29.92666 -28.62888 -27.89924 -25.49342 -25.08188 -23.26175 -22.84141 -22.08128 -21.34603 -19.98864 -18.79688 -17.50013 -17.25237 -16.68846 -15.83516 -15.48560 -15.02825 -14.82665 -14.69138 -14.49014 -14.19060 -13.89625 -13.62213 -13.26362 -13.21302 -13.01144 -12.82832 -12.70442 -12.38315 -12.25563 -12.08066 -12.04224 -11.89468 -11.73287 -11.45296 -11.16068 -11.07251 -10.80871 -10.72172 -10.48373 -10.38211 -10.17611 -9.97059 -9.61500 -9.16593 -8.86254 -8.57331 -8.39747 -6.97769 -6.08793 -3.07742 2.63368 2.85479 3.53216 3.56988 3.74205 3.75447 4.27634 4.47990 4.56623 4.68416 4.71092 4.86671 4.90616 4.92666 4.96142 5.02276 5.10731 5.14021 5.18954 5.29717 5.34990 5.37925 5.40861 5.53326 5.54523 5.56495 5.63404 5.69569 5.78148 5.79664 5.82093 5.91251 5.95190 6.00454 6.03823 6.14010 6.38619 6.49171 6.54978 6.70323 6.73801 6.79035 6.83259 7.42744 7.83223 8.24406 8.77687 9.25288 10.11634 10.26971 11.39905 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.028752 B = 0.003061 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.596949 B = 9143.700588 C = 9359.556179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.166 4.166 3 C 0.069 3.931 4 H 0.101 0.899 5 C 0.520 3.480 6 O -0.522 6.522 7 N -0.610 5.610 8 C 0.100 3.900 9 C -0.136 4.136 10 C -0.110 4.110 11 C -0.107 4.107 12 H 0.071 0.929 13 C 0.165 3.835 14 N -0.742 5.742 15 C -0.329 4.329 16 H 0.064 0.936 17 C -0.047 4.047 18 N -0.945 5.945 19 Si 1.080 2.920 20 H -0.285 1.285 21 H -0.295 1.295 22 H -0.295 1.295 23 C 0.121 3.879 24 N -0.520 5.520 25 C 0.019 3.981 26 C 0.006 3.994 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.366 0.634 41 H 0.254 0.746 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.033 0.967 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.140 12.208 -3.600 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.205 4.205 3 C -0.044 4.044 4 H 0.119 0.881 5 C 0.306 3.694 6 O -0.396 6.396 7 N -0.345 5.345 8 C -0.023 4.023 9 C -0.174 4.174 10 C -0.148 4.148 11 C -0.127 4.127 12 H 0.089 0.911 13 C 0.037 3.963 14 N -0.388 5.388 15 C -0.460 4.460 16 H 0.082 0.918 17 C -0.244 4.244 18 N -0.591 5.591 19 Si 0.911 3.089 20 H -0.210 1.210 21 H -0.223 1.223 22 H -0.223 1.223 23 C -0.001 4.001 24 N -0.243 5.243 25 C -0.129 4.129 26 C -0.142 4.142 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.200 0.800 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.051 0.949 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.204 11.800 -3.820 22.862 hybrid contribution -1.783 0.400 -0.129 1.831 sum -20.987 12.200 -3.949 24.595 Atomic orbital electron populations 1.22068 0.94970 1.02271 1.02020 1.22417 0.96905 0.96497 1.04645 1.21691 0.93209 0.95003 0.94454 0.88119 1.20427 0.89970 0.77241 0.81722 1.90680 1.64156 1.45480 1.39330 1.48100 1.07294 1.64379 1.14715 1.21939 0.94978 0.96258 0.89108 1.21967 0.97826 0.95910 1.01707 1.21511 0.92925 1.02999 0.97342 1.21683 0.97011 0.95962 0.98007 0.91050 1.20522 0.90124 0.88218 0.97417 1.42346 1.07354 1.02814 1.86247 1.20044 0.85520 0.95529 1.44946 0.91782 1.25774 1.06596 0.91384 1.00630 1.70893 1.02319 1.33327 1.52582 0.83237 0.73849 0.75961 0.75848 1.21050 1.22269 1.22283 1.21591 0.78831 0.96812 1.02882 1.61778 1.24625 1.35976 1.01963 1.22544 1.02619 0.94648 0.93051 1.22827 0.88744 0.99859 1.02783 0.92228 0.91894 0.92079 0.90207 0.89726 0.91298 0.89629 0.90793 0.91579 0.90732 0.91925 0.96073 0.96100 0.80004 0.93527 0.91506 0.89034 0.94865 0.91508 0.90519 0.91576 0.91304 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 8.10 37.16 0.30 -0.69 16 2 C -0.17 -1.41 4.38 -26.73 -0.12 -1.52 16 3 C 0.07 0.69 1.49 -68.86 -0.10 0.59 16 4 H 0.10 0.86 7.17 -51.93 -0.37 0.49 16 5 C 0.52 7.17 6.90 -10.99 -0.08 7.09 16 6 O -0.52 -9.29 14.75 5.55 0.08 -9.20 16 7 N -0.61 -7.76 2.97 -172.76 -0.51 -8.27 16 8 C 0.10 0.97 5.47 -3.70 -0.02 0.95 16 9 C -0.14 -1.48 5.86 -26.61 -0.16 -1.63 16 10 C -0.11 -1.60 5.06 -26.69 -0.13 -1.74 16 11 C -0.11 -1.75 2.37 -90.50 -0.21 -1.97 16 12 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 13 C 0.17 3.41 5.65 -4.04 -0.02 3.39 16 14 N -0.74 -18.96 5.32 -59.91 -0.32 -19.28 16 15 C -0.33 -9.49 9.99 -15.06 -0.15 -9.64 16 16 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.05 -1.38 5.50 -17.43 -0.10 -1.47 16 18 N -0.95 -29.51 13.70 55.49 0.76 -28.75 16 19 Si 1.08 26.29 29.92 -169.99 -5.09 21.21 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.12 1.78 5.71 -3.71 -0.02 1.76 16 24 N -0.52 -5.53 4.48 -244.58 -1.10 -6.62 16 25 C 0.02 0.20 8.16 60.06 0.49 0.69 16 26 C 0.01 0.04 9.16 60.07 0.55 0.59 16 27 H 0.06 0.32 7.66 -51.93 -0.40 -0.07 16 28 H 0.06 0.40 5.06 -51.93 -0.26 0.13 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.78 6.02 -51.93 -0.31 0.47 16 31 H 0.08 0.71 4.77 -51.93 -0.25 0.46 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.64 4.37 -51.92 -0.23 0.41 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.75 7.60 -51.93 -0.39 0.36 16 36 H 0.07 1.28 7.16 -51.93 -0.37 0.90 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.37 9.49 5.69 -40.82 -0.23 9.26 16 41 H 0.25 7.77 6.78 -40.82 -0.28 7.49 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 1.51 7.02 -51.93 -0.36 1.14 16 44 H 0.03 0.29 4.93 -51.93 -0.26 0.03 16 45 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 46 H 0.08 0.98 7.04 -51.93 -0.37 0.61 16 47 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 48 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 49 H 0.05 0.29 3.97 -51.93 -0.21 0.08 16 LS Contribution 358.73 15.07 5.41 5.41 Total: -1.00 -34.29 358.73 -8.67 -42.96 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -8.14 Total: 6.16 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 0.23 Total: -3.61 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -1.17 Total: -62.92 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.20 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -5.09 Total: 21.21 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.29 -8.67 -42.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714085607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.188 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds