Wall clock time and date at job start Fri Apr 10 2020 20:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46894 * 109.47515 * 180.02562 * 3 2 1 5 5 C 1.48557 * 111.00159 * 285.41911 * 4 3 2 6 6 C 1.54383 * 104.59601 * 200.95547 * 5 4 3 7 7 C 1.54252 * 105.06031 * 23.85340 * 6 5 4 8 8 C 1.48558 * 111.00572 * 169.99829 * 4 3 2 9 9 H 1.09009 * 110.40984 * 40.26353 * 8 4 3 10 10 C 1.50697 * 110.41344 * 277.82431 * 8 4 3 11 11 O 1.21277 * 120.00274 * 359.97438 * 10 8 4 12 12 N 1.34780 * 119.99956 * 179.97438 * 10 8 4 13 13 C 1.46504 * 119.99825 * 179.97438 * 12 10 8 14 14 C 1.52993 * 109.47008 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47175 * 55.00002 * 14 13 12 16 16 C 1.53000 * 109.47291 * 294.99762 * 14 13 12 17 17 C 1.53002 * 109.47263 * 174.99801 * 14 13 12 18 18 N 1.46497 * 109.47379 * 184.99557 * 17 14 13 19 19 C 1.36936 * 120.00111 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00252 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00154 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99878 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99985 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47212 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46905 * 120.00220 * 23 21 19 26 26 H 1.48507 * 109.47260 * 240.00135 * 23 21 19 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.08996 * 110.41165 * 319.73567 * 5 4 3 35 35 H 1.09013 * 110.40992 * 82.17947 * 5 4 3 36 36 H 1.08999 * 110.32587 * 264.95415 * 6 5 4 37 37 H 1.09003 * 110.40800 * 142.79735 * 6 5 4 38 38 H 1.08996 * 110.32940 * 241.10628 * 7 6 5 39 39 H 1.09004 * 110.41109 * 118.93653 * 7 6 5 40 40 H 0.96994 * 120.00439 * 359.97438 * 12 10 8 41 41 H 1.09003 * 109.47083 * 300.00168 * 13 12 10 42 42 H 1.09002 * 109.47075 * 59.99504 * 13 12 10 43 43 H 1.09000 * 109.47279 * 59.99965 * 16 14 13 44 44 H 1.08999 * 109.47263 * 180.02562 * 16 14 13 45 45 H 1.08997 * 109.47208 * 300.00220 * 16 14 13 46 46 H 1.08991 * 109.47175 * 305.00204 * 17 14 13 47 47 H 1.09005 * 109.46773 * 64.99741 * 17 14 13 48 48 H 0.97006 * 119.99855 * 0.02562 * 18 17 14 49 49 H 0.97003 * 120.00339 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0419 1.0737 1.3361 6 6 5.4838 1.6253 1.3457 7 6 5.4834 2.7665 0.3079 8 6 4.0412 2.8084 -0.2415 9 1 3.4499 3.5477 0.2989 10 6 4.0495 3.1168 -1.7166 11 8 3.6539 2.2903 -2.5111 12 7 4.4966 4.3110 -2.1529 13 6 4.5052 4.6105 -3.5870 14 6 5.0552 6.0206 -3.8102 15 1 6.0360 6.1063 -3.3424 16 6 4.1026 7.0440 -3.1887 17 6 5.1812 6.2872 -5.3115 18 7 5.8181 7.5892 -5.5246 19 6 6.0366 8.0444 -6.7974 20 1 5.7390 7.4439 -7.6443 21 6 6.6407 9.2778 -6.9993 22 7 7.0038 10.0095 -5.9673 23 14 6.9393 9.8985 -8.7357 24 1 6.4437 8.8954 -9.7120 25 1 6.2169 11.1807 -8.9341 26 1 8.3944 10.1132 -8.9413 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.4507 1.5414 2.1234 35 1 4.0485 -0.0097 1.4570 36 1 6.1888 0.8473 1.0526 37 1 5.7364 2.0116 2.3332 38 1 6.1879 2.5488 -0.4947 39 1 5.7345 3.7140 0.7847 40 1 4.8127 4.9722 -1.5175 41 1 5.1355 3.8879 -4.1053 42 1 3.4889 4.5514 -3.9766 43 1 4.0128 6.8541 -2.1191 44 1 4.4942 8.0486 -3.3481 45 1 3.1218 6.9583 -3.6564 46 1 5.7882 5.5064 -5.7695 47 1 4.1898 6.2893 -5.7646 48 1 6.0851 8.1288 -4.7639 49 1 7.4263 10.8713 -6.1083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617491.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:35:28 Heat of formation + Delta-G solvation = -39.027414 kcal Electronic energy + Delta-G solvation = -24313.723491 eV Core-core repulsion = 20889.233491 eV Total energy + Delta-G solvation = -3424.490001 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38559 -38.41265 -36.67029 -34.86779 -34.28136 -32.49203 -31.10310 -30.32112 -29.46473 -26.47441 -25.82062 -25.25323 -23.00193 -22.11776 -21.88249 -20.72930 -20.35262 -19.63766 -17.55157 -16.88726 -16.58176 -15.96158 -15.44330 -15.33517 -15.00201 -14.46788 -14.39044 -14.11313 -13.72819 -13.60881 -13.37494 -13.23173 -12.98724 -12.84893 -12.65942 -12.35171 -12.08806 -11.96187 -11.90047 -11.60708 -11.58137 -11.16261 -11.05606 -10.98009 -10.91189 -10.79045 -10.69636 -10.55641 -10.40042 -10.02819 -9.76306 -9.62690 -8.96965 -8.87894 -8.74492 -6.91963 -5.77144 -3.05330 2.66785 3.00587 3.43639 3.49636 3.51737 3.76545 4.24003 4.29535 4.56922 4.59627 4.73882 4.81751 4.83491 4.87480 5.07421 5.10695 5.16551 5.20374 5.23422 5.30378 5.39840 5.41390 5.44314 5.52354 5.57215 5.58153 5.71740 5.76743 5.80653 5.82853 5.95689 5.97467 6.01973 6.05470 6.11942 6.25523 6.39833 6.46635 6.55051 6.65620 6.72820 6.78223 6.87701 7.55480 7.71370 8.29406 8.42099 9.53437 10.10837 10.45650 11.45967 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.028819 B = 0.002381 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.364450 B =11755.663934 C =12292.978967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.047 3.953 4 N -0.486 5.486 5 C 0.032 3.968 6 C -0.123 4.123 7 C -0.115 4.115 8 C 0.042 3.958 9 H 0.075 0.925 10 C 0.519 3.481 11 O -0.521 6.521 12 N -0.727 5.727 13 C 0.129 3.871 14 C -0.110 4.110 15 H 0.076 0.924 16 C -0.141 4.141 17 C 0.160 3.840 18 N -0.731 5.731 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.398 0.602 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.041 0.959 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.021 0.979 47 H 0.022 0.978 48 H 0.384 0.616 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.233 -17.327 19.603 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.081 4.081 4 N -0.210 5.210 5 C -0.096 4.096 6 C -0.161 4.161 7 C -0.154 4.154 8 C -0.070 4.070 9 H 0.093 0.907 10 C 0.304 3.696 11 O -0.396 6.396 12 N -0.380 5.380 13 C 0.005 3.995 14 C -0.129 4.129 15 H 0.094 0.906 16 C -0.198 4.198 17 C 0.032 3.968 18 N -0.376 5.376 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.233 0.767 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.071 0.929 46 H 0.039 0.961 47 H 0.040 0.960 48 H 0.218 0.782 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.377 -18.315 18.394 27.275 hybrid contribution 0.134 1.588 0.223 1.610 sum -8.243 -16.726 18.617 26.350 Atomic orbital electron populations 1.21740 0.95694 1.01729 1.01754 1.21419 0.95210 0.96025 1.02636 1.22338 0.86963 0.97939 1.00871 1.65063 1.08451 1.20602 1.26894 1.23182 0.95103 1.01535 0.89763 1.22286 0.96820 0.98051 0.98935 1.22272 0.94382 0.99552 0.99157 1.22615 0.97867 0.92629 0.93874 0.90710 1.20209 0.77682 0.81683 0.90073 1.90703 1.45832 1.46601 1.56439 1.46057 1.66057 1.16654 1.09210 1.21384 1.01622 0.96486 0.80016 1.21545 0.99567 0.92844 0.98952 0.90557 1.21785 0.99296 1.00188 0.98549 1.20576 0.96099 0.89406 0.90702 1.42350 1.72105 1.17193 1.05906 1.19288 1.32242 1.00448 0.84834 0.91099 1.24740 1.01745 0.97390 0.97266 1.69666 1.47203 1.13153 1.28338 0.86107 0.77477 0.78505 0.84063 1.20535 1.21894 1.21884 0.92523 0.92532 0.93048 0.92347 0.90829 0.90372 0.94874 0.93707 0.89702 0.90627 0.90953 0.90264 0.90304 0.76746 0.91419 0.91510 0.93973 0.91179 0.92871 0.96111 0.96021 0.78224 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.11 -1.00 6.05 -26.73 -0.16 -1.16 16 3 C 0.05 0.46 4.64 -3.83 -0.02 0.44 16 4 N -0.49 -5.03 4.60 -223.50 -1.03 -6.06 16 5 C 0.03 0.24 5.91 -2.18 -0.01 0.23 16 6 C -0.12 -0.84 7.00 -25.35 -0.18 -1.02 16 7 C -0.12 -0.91 6.53 -25.35 -0.17 -1.08 16 8 C 0.04 0.41 2.67 -67.22 -0.18 0.23 16 9 H 0.08 0.63 8.00 -51.92 -0.42 0.21 16 10 C 0.52 6.73 6.77 -10.99 -0.07 6.65 16 11 O -0.52 -8.91 15.91 5.56 0.09 -8.82 16 12 N -0.73 -8.51 5.27 -60.29 -0.32 -8.83 16 13 C 0.13 1.79 5.06 -4.04 -0.02 1.77 16 14 C -0.11 -1.69 2.46 -90.62 -0.22 -1.91 16 15 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 16 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 17 C 0.16 3.20 5.65 -4.04 -0.02 3.17 16 18 N -0.73 -18.33 5.33 -59.91 -0.32 -18.65 16 19 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 23 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.45 7.47 -51.93 -0.39 0.06 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.91 7.40 -51.93 -0.38 0.53 16 33 H 0.03 0.28 7.77 -51.93 -0.40 -0.12 16 34 H 0.04 0.30 7.75 -51.93 -0.40 -0.10 16 35 H 0.08 0.61 7.85 -51.92 -0.41 0.21 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.73 7.85 -51.93 -0.41 0.32 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.40 3.74 7.66 -40.82 -0.31 3.42 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 44 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.38 9.98 6.85 -40.82 -0.28 9.70 16 49 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 387.06 15.07 5.83 5.83 Total: -1.00 -32.80 387.06 -9.83 -42.63 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -9.19 Total: 6.33 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -0.60 Total: -2.49 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.94 Total: -60.96 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.80 -9.83 -42.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617491.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.601 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds