Wall clock time and date at job start Fri Apr 10 2020 20:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47050 * 59.99408 * 10 8 6 12 12 H 1.48496 * 109.47289 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.46855 * 299.99389 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.46895 * 179.97438 * 18 16 15 20 20 C 1.53120 * 109.52606 * 294.68259 * 19 18 16 21 21 C 1.53041 * 109.27993 * 182.44068 * 20 19 18 22 22 N 1.46841 * 109.51974 * 59.18060 * 21 20 19 23 23 C 1.46909 * 110.99490 * 174.15853 * 22 21 20 24 24 C 1.46837 * 111.20177 * 298.25402 * 22 21 20 25 25 C 1.53042 * 109.52313 * 61.74426 * 24 22 21 26 26 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 27 27 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 29 29 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 30 30 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 31 31 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 32 32 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 34 34 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 35 35 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 36 36 H 1.09000 * 109.47269 * 299.99802 * 18 16 15 37 37 H 1.08994 * 109.47309 * 60.00191 * 18 16 15 38 38 H 1.09001 * 109.52482 * 54.87402 * 19 18 16 39 39 H 1.08996 * 109.50573 * 302.38553 * 20 19 18 40 40 H 1.08999 * 109.50115 * 62.49967 * 20 19 18 41 41 H 1.08993 * 109.45991 * 299.16300 * 21 20 19 42 42 H 1.09004 * 109.45792 * 179.19335 * 21 20 19 43 43 H 1.09005 * 109.46930 * 184.20927 * 23 22 21 44 44 H 1.08997 * 109.47063 * 304.20578 * 23 22 21 45 45 H 1.08999 * 109.47192 * 64.21220 * 23 22 21 46 46 H 1.09004 * 109.46797 * 301.73340 * 24 22 21 47 47 H 1.09003 * 109.45917 * 181.75357 * 24 22 21 48 48 H 1.08996 * 109.50198 * 180.87823 * 25 24 22 49 49 H 1.09006 * 109.53164 * 60.78260 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 0.9407 1.4081 -4.6937 10 14 2.1041 -0.3295 -6.5123 11 1 1.5157 -1.6757 -6.7281 12 1 1.5906 0.6060 -7.5448 13 1 3.5834 -0.4141 -6.6121 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6248 -1.4441 3.7794 18 6 1.5971 0.3651 4.8932 19 6 2.1060 -0.3568 6.1426 20 6 1.3948 -1.7059 6.2794 21 6 1.8629 -2.3961 7.5627 22 7 1.5582 -1.5425 8.7180 23 6 1.8674 -2.2319 9.9779 24 6 2.2676 -0.2597 8.6323 25 6 1.8117 0.4942 7.3809 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6054 -1.7198 -1.2951 30 1 3.1263 -0.7995 -1.2055 31 1 1.1488 0.8594 -2.3517 32 1 0.6804 1.9069 -5.4839 33 1 1.6053 -1.7197 1.2952 34 1 3.1263 -0.7995 1.2056 35 1 1.1487 0.8594 2.3518 36 1 2.0324 1.3633 4.8474 37 1 0.5109 0.4440 4.9368 38 1 3.1808 -0.5175 6.0581 39 1 0.3175 -1.5466 6.3241 40 1 1.6351 -2.3327 5.4206 41 1 2.9380 -2.5676 7.5113 42 1 1.3476 -3.3506 7.6703 43 1 1.5632 -1.6074 10.8179 44 1 1.3290 -3.1789 10.0155 45 1 2.9394 -2.4208 10.0351 46 1 3.3409 -0.4412 8.5759 47 1 2.0462 0.3375 9.5169 48 1 2.3498 1.4394 7.3093 49 1 0.7409 0.6889 7.4426 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753632422.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:35:36 Heat of formation + Delta-G solvation = -47.433131 kcal Electronic energy + Delta-G solvation = -23960.037784 eV Core-core repulsion = 20535.183284 eV Total energy + Delta-G solvation = -3424.854500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.20443 -38.89758 -36.86187 -34.71614 -34.29474 -32.50456 -31.08700 -30.27879 -29.47347 -26.69769 -25.83154 -24.83843 -23.43299 -22.69595 -21.98001 -20.51151 -19.95439 -19.67950 -17.33489 -16.72824 -16.20524 -15.89623 -15.74698 -15.36282 -14.92069 -14.66252 -14.63509 -14.23640 -14.00420 -13.58523 -13.35670 -13.19166 -12.95843 -12.69181 -12.66381 -12.42979 -12.35205 -12.07429 -11.95110 -11.76066 -11.42024 -11.06079 -10.92458 -10.90391 -10.76425 -10.68340 -10.57406 -10.52570 -10.40438 -10.08388 -9.74437 -9.59738 -8.98530 -8.87224 -8.65478 -6.92412 -5.77010 -3.05397 2.64599 3.20330 3.44598 3.48798 3.49935 3.63117 4.42084 4.49597 4.54948 4.59595 4.75118 4.89316 4.97667 5.05722 5.06999 5.19511 5.21419 5.24151 5.25716 5.29492 5.38378 5.39927 5.50548 5.52909 5.57788 5.61425 5.66437 5.76582 5.82213 5.85896 5.97169 6.00397 6.09451 6.14677 6.21159 6.26491 6.39752 6.52558 6.65302 6.74446 6.77490 6.78492 6.86988 7.52006 7.69989 8.24181 8.42155 9.53309 10.10695 10.45562 11.45896 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.052900 B = 0.002004 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.170724 B =13968.142984 C =14189.143762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.727 5.727 16 C 0.509 3.491 17 O -0.542 6.542 18 C -0.137 4.137 19 C -0.072 4.072 20 C -0.116 4.116 21 C 0.057 3.943 22 N -0.545 5.545 23 C 0.025 3.975 24 C 0.056 3.944 25 C -0.113 4.113 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.022 0.978 30 H 0.020 0.980 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.023 0.977 46 H 0.032 0.968 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 -1.554 28.760 28.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.003 3.997 15 N -0.378 5.378 16 C 0.296 3.704 17 O -0.419 6.419 18 C -0.177 4.177 19 C -0.091 4.091 20 C -0.154 4.154 21 C -0.071 4.071 22 N -0.270 5.270 23 C -0.124 4.124 24 C -0.072 4.072 25 C -0.151 4.151 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.218 0.782 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.234 0.766 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.042 0.958 46 H 0.050 0.950 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.129 -2.307 28.680 28.773 hybrid contribution 0.703 0.244 -1.038 1.277 sum 0.574 -2.063 27.642 27.725 Atomic orbital electron populations 1.21786 0.94680 1.01911 1.01466 1.21548 0.96694 1.00456 0.94240 0.90602 1.20577 0.96584 0.94213 0.85424 1.42330 1.66968 1.27649 1.00574 1.19199 1.28662 1.05542 0.83677 0.91212 1.24735 1.00962 0.97472 0.97854 1.69645 1.43256 1.16851 1.28592 0.86249 0.78005 0.77709 0.84115 1.21276 1.21694 1.21273 1.21393 1.00011 0.95264 0.83067 1.46131 1.57744 1.27881 1.06086 1.20678 0.79262 0.85816 0.84661 1.90665 1.40039 1.24590 1.86647 1.21742 1.03173 1.00043 0.92750 1.20939 1.00845 0.95045 0.92251 1.21772 1.00026 0.96358 0.97255 1.22096 0.98699 0.96001 0.90270 1.61964 1.58160 1.04505 1.02356 1.22349 0.98837 0.99322 0.91870 1.22068 0.95638 0.90832 0.98632 1.21669 1.02275 0.97773 0.93370 0.91180 0.92856 0.93903 0.96030 0.96176 0.78212 0.93488 0.91460 0.91507 0.76573 0.88937 0.88823 0.90678 0.91694 0.89364 0.94889 0.90902 0.91475 0.91402 0.95812 0.94960 0.90850 0.91416 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.94 37.15 0.33 -1.73 16 2 C -0.11 -1.68 2.46 -90.62 -0.22 -1.91 16 3 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 4 C 0.16 3.19 5.65 -4.04 -0.02 3.16 16 5 N -0.73 -18.32 5.33 -59.91 -0.32 -18.64 16 6 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 7 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 10 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.13 1.72 5.06 -4.04 -0.02 1.70 16 15 N -0.73 -8.12 5.28 -60.30 -0.32 -8.44 16 16 C 0.51 5.97 7.56 -10.99 -0.08 5.88 16 17 O -0.54 -8.31 13.99 5.55 0.08 -8.23 16 18 C -0.14 -1.11 5.18 -27.88 -0.14 -1.25 16 19 C -0.07 -0.63 1.90 -90.50 -0.17 -0.80 16 20 C -0.12 -1.14 5.09 -26.65 -0.14 -1.27 16 21 C 0.06 0.52 5.46 -3.83 -0.02 0.50 16 22 N -0.55 -4.65 4.91 -242.96 -1.19 -5.84 16 23 C 0.02 0.17 9.59 60.07 0.58 0.74 16 24 C 0.06 0.43 5.46 -3.84 -0.02 0.40 16 25 C -0.11 -0.81 5.38 -26.65 -0.14 -0.95 16 26 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.38 9.98 6.85 -40.82 -0.28 9.70 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.40 3.57 7.66 -40.82 -0.31 3.25 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.79 7.95 -51.93 -0.41 0.37 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.06 6.04 -51.93 -0.31 0.74 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 45 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 47 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -32.16 382.11 -9.83 -41.99 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -9.21 Total: 6.24 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.32 Total: -2.91 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -1.11 Total: -60.30 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.08 Total: -8.23 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.16 -9.83 -41.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753632422.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.439 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds