Wall clock time and date at job start Fri Apr 10 2020 20:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.52997 * 109.46729 * 119.99871 * 2 1 3 5 5 N 1.46506 * 109.47289 * 294.99928 * 4 2 1 6 6 C 1.36930 * 120.00258 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99823 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00439 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99225 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00268 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46935 * 90.00259 * 10 8 6 12 12 H 1.48507 * 109.47218 * 210.00042 * 10 8 6 13 13 H 1.48492 * 109.47204 * 330.00019 * 10 8 6 14 14 C 1.53001 * 109.47347 * 239.99678 * 2 1 3 15 15 N 1.46503 * 109.47149 * 65.00153 * 14 2 1 16 16 C 1.34769 * 119.99831 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00233 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99882 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.47365 * 180.02562 * 18 16 15 20 20 C 1.53119 * 109.51777 * 294.68163 * 19 18 16 21 21 C 1.53041 * 109.27804 * 182.44247 * 20 19 18 22 22 N 1.46850 * 109.52415 * 59.17650 * 21 20 19 23 23 C 1.46899 * 110.99679 * 174.16223 * 22 21 20 24 24 C 1.46844 * 111.19765 * 298.26353 * 22 21 20 25 25 C 1.53031 * 109.52531 * 61.74076 * 24 22 21 26 26 H 1.09004 * 109.46683 * 60.00598 * 1 2 3 27 27 H 1.09002 * 109.47620 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47757 * 300.00616 * 1 2 3 29 29 H 1.09001 * 109.47289 * 174.99800 * 4 2 1 30 30 H 1.09004 * 109.47261 * 55.00056 * 4 2 1 31 31 H 0.97001 * 119.99251 * 0.02562 * 5 4 2 32 32 H 0.97000 * 119.99950 * 179.97438 * 9 8 6 33 33 H 1.08995 * 109.47104 * 185.00632 * 14 2 1 34 34 H 1.09005 * 109.47062 * 305.00281 * 14 2 1 35 35 H 0.97002 * 119.99560 * 359.97438 * 15 14 2 36 36 H 1.09005 * 109.47433 * 300.00035 * 18 16 15 37 37 H 1.09000 * 109.47417 * 59.99690 * 18 16 15 38 38 H 1.08999 * 109.52354 * 54.86999 * 19 18 16 39 39 H 1.09007 * 109.50265 * 302.38041 * 20 19 18 40 40 H 1.08997 * 109.50598 * 62.50280 * 20 19 18 41 41 H 1.09005 * 109.45844 * 299.16424 * 21 20 19 42 42 H 1.08998 * 109.46503 * 179.19865 * 21 20 19 43 43 H 1.09007 * 109.46588 * 184.21229 * 23 22 21 44 44 H 1.09001 * 109.47196 * 304.20872 * 23 22 21 45 45 H 1.08995 * 109.46882 * 64.21363 * 23 22 21 46 46 H 1.08998 * 109.46127 * 301.72258 * 24 22 21 47 47 H 1.09006 * 109.45331 * 181.75255 * 24 22 21 48 48 H 1.09004 * 109.50169 * 180.88212 * 25 24 22 49 49 H 1.08999 * 109.53613 * 60.78334 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 2.0017 -0.4201 3.6856 7 1 2.5634 -1.3371 3.7865 8 6 1.6349 0.2971 4.8161 9 7 0.9509 1.4147 4.6930 10 14 2.1110 -0.3248 6.5119 11 1 3.4337 0.2338 6.8906 12 1 1.0904 0.1052 7.5014 13 1 2.1872 -1.8076 6.4920 14 6 2.0401 -0.7213 -1.2492 15 7 1.6526 0.0352 -2.4424 16 6 1.9966 -0.4132 -3.6658 17 8 2.6266 -1.4434 -3.7791 18 6 1.5985 0.3653 -4.8932 19 6 2.1084 -0.3561 -6.1424 20 6 3.6396 -0.3504 -6.1472 21 6 4.1434 -1.0191 -7.4284 22 7 3.6296 -0.2920 -8.5962 23 6 4.2039 -0.8213 -9.8403 24 6 2.1621 -0.3243 -8.6384 25 6 1.5993 0.3652 -7.3935 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.1262 -0.7995 1.2057 30 1 1.6052 -1.7198 1.2952 31 1 1.1481 0.8591 2.3517 32 1 0.6942 1.9158 5.4829 33 1 3.1263 -0.7996 -1.2054 34 1 1.6054 -1.7199 -1.2951 35 1 1.1483 0.8590 -2.3518 36 1 0.5122 0.4436 -4.9374 37 1 2.0331 1.3638 -4.8470 38 1 1.7471 -1.3844 -6.1423 39 1 3.9998 0.6777 -6.1075 40 1 4.0083 -0.8995 -5.2809 41 1 3.7942 -2.0512 -7.4607 42 1 5.2331 -1.0039 -7.4416 43 1 3.8651 -0.2177 -10.6824 44 1 5.2918 -0.7858 -9.7822 45 1 3.8809 -1.8530 -9.9794 46 1 1.8223 -1.3596 -8.6651 47 1 1.8130 0.1956 -9.5306 48 1 0.5102 0.3272 -7.4175 49 1 1.9268 1.4046 -7.3730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753632423.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:35:38 Heat of formation + Delta-G solvation = -47.515675 kcal Electronic energy + Delta-G solvation = -23953.280846 eV Core-core repulsion = 20528.422766 eV Total energy + Delta-G solvation = -3424.858079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.20455 -38.89691 -36.86336 -34.71562 -34.29624 -32.50650 -31.08522 -30.27920 -29.47424 -26.70004 -25.83152 -24.83911 -23.43113 -22.69761 -21.98043 -20.51148 -19.96302 -19.67069 -17.33778 -16.73145 -16.20451 -15.97374 -15.62541 -15.35031 -14.95034 -14.84152 -14.50532 -14.18797 -13.96750 -13.68933 -13.32460 -13.19556 -12.87346 -12.73771 -12.68634 -12.47181 -12.33062 -12.08155 -11.92566 -11.76431 -11.41401 -11.06817 -10.92464 -10.91499 -10.76432 -10.69906 -10.56759 -10.51458 -10.40994 -10.05769 -9.74667 -9.60045 -8.98638 -8.87800 -8.65219 -6.92502 -5.77339 -3.05619 2.64592 3.20279 3.43821 3.49102 3.50663 3.63290 4.42189 4.49619 4.55064 4.59446 4.75207 4.89270 4.97759 5.05454 5.07631 5.19353 5.21045 5.23674 5.26632 5.29542 5.38671 5.39253 5.50769 5.52953 5.57684 5.61541 5.66426 5.76863 5.81909 5.86145 5.96720 6.00005 6.09756 6.14782 6.21405 6.26055 6.39322 6.52436 6.64895 6.74716 6.77239 6.78698 6.86812 7.51988 7.70346 8.24143 8.41863 9.53112 10.10468 10.45359 11.45679 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.047544 B = 0.002021 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.784498 B =13848.186765 C =14173.291170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.126 3.874 15 N -0.727 5.727 16 C 0.509 3.491 17 O -0.542 6.542 18 C -0.137 4.137 19 C -0.072 4.072 20 C -0.117 4.117 21 C 0.057 3.943 22 N -0.545 5.545 23 C 0.025 3.975 24 C 0.056 3.944 25 C -0.113 4.113 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.023 0.977 46 H 0.032 0.968 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.851 -0.988 -28.720 28.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.003 3.997 15 N -0.378 5.378 16 C 0.296 3.704 17 O -0.419 6.419 18 C -0.177 4.177 19 C -0.091 4.091 20 C -0.154 4.154 21 C -0.071 4.071 22 N -0.270 5.270 23 C -0.124 4.124 24 C -0.072 4.072 25 C -0.151 4.151 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.218 0.782 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.234 0.766 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.042 0.958 46 H 0.050 0.950 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.515 -1.363 -28.605 28.678 hybrid contribution -0.446 -0.434 0.971 1.153 sum 1.069 -1.797 -27.634 27.713 Atomic orbital electron populations 1.21788 0.94708 1.01889 1.01460 1.21547 0.96674 1.00478 0.94243 0.90573 1.20580 0.96598 0.94206 0.85421 1.42338 1.66893 1.27709 1.00591 1.19244 1.28612 1.05458 0.83678 0.91157 1.24738 1.01035 0.97430 0.97871 1.69656 1.43541 1.16639 1.28489 0.86172 0.77577 0.78014 0.84334 1.21734 1.21780 1.20766 1.21395 1.00041 0.95237 0.83065 1.46131 1.57715 1.27907 1.06091 1.20675 0.79289 0.85781 0.84669 1.90664 1.39916 1.24686 1.86672 1.21745 1.02833 1.00363 0.92773 1.20939 0.96253 0.99621 0.92254 1.21776 0.94671 1.01576 0.97412 1.22098 0.99659 0.95137 0.90167 1.61963 1.06907 1.55385 1.02736 1.22348 1.00312 0.97656 0.92057 1.22066 0.87412 0.99026 0.98658 1.21667 0.99678 1.00340 0.93401 0.93917 0.92875 0.91175 0.96153 0.96037 0.78215 0.93542 0.91468 0.91494 0.76570 0.88963 0.88801 0.90690 0.91676 0.89350 0.94899 0.90892 0.91476 0.91396 0.95819 0.94970 0.90854 0.91429 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 2 C -0.11 -1.68 2.46 -90.62 -0.22 -1.91 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 4 C 0.16 3.18 5.65 -4.04 -0.02 3.16 16 5 N -0.73 -18.31 5.33 -59.90 -0.32 -18.63 16 6 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 7 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 10 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.13 1.72 5.06 -4.04 -0.02 1.70 16 15 N -0.73 -8.11 5.28 -60.29 -0.32 -8.43 16 16 C 0.51 5.96 7.56 -10.99 -0.08 5.88 16 17 O -0.54 -8.30 13.99 5.56 0.08 -8.22 16 18 C -0.14 -1.11 5.18 -27.88 -0.14 -1.25 16 19 C -0.07 -0.63 1.90 -90.50 -0.17 -0.80 16 20 C -0.12 -1.15 5.09 -26.65 -0.14 -1.28 16 21 C 0.06 0.53 5.46 -3.83 -0.02 0.50 16 22 N -0.55 -4.67 4.91 -242.96 -1.19 -5.86 16 23 C 0.02 0.17 9.59 60.06 0.58 0.74 16 24 C 0.06 0.43 5.46 -3.84 -0.02 0.40 16 25 C -0.11 -0.81 5.38 -26.65 -0.14 -0.95 16 26 H 0.04 0.50 7.18 -51.93 -0.37 0.12 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.38 9.98 6.85 -40.82 -0.28 9.70 16 32 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 3.56 7.65 -40.82 -0.31 3.25 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.78 7.95 -51.93 -0.41 0.37 16 39 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 40 H 0.09 1.06 6.04 -51.93 -0.31 0.75 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 45 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.07 0.48 8.12 -51.93 -0.42 0.05 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -32.19 382.11 -9.83 -42.03 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -9.21 Total: 6.21 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.32 Total: -2.90 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -1.11 Total: -60.32 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.08 Total: -8.22 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.19 -9.83 -42.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753632423.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.491 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds