Wall clock time and date at job start Fri Apr 10 2020 20:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47033 * 2 1 4 4 C 1.52996 * 109.47558 * 119.99801 * 2 1 3 5 5 N 1.46500 * 109.47227 * 295.00131 * 4 2 1 6 6 C 1.36941 * 120.00207 * 179.97438 * 5 4 2 7 7 H 1.07996 * 119.99645 * 359.97438 * 6 5 4 8 8 C 1.38803 * 119.99974 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99958 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00361 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46896 * 90.00038 * 10 8 6 12 12 H 1.48500 * 109.47436 * 210.00098 * 10 8 6 13 13 H 1.48500 * 109.47148 * 330.00624 * 10 8 6 14 14 C 1.52998 * 109.47136 * 240.00128 * 2 1 3 15 15 N 1.46502 * 109.47390 * 64.99341 * 14 2 1 16 16 C 1.34779 * 120.00127 * 180.02562 * 15 14 2 17 17 O 1.21279 * 119.99992 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99763 * 180.02562 * 16 15 14 19 19 N 1.46895 * 109.46911 * 173.73133 * 18 16 15 20 20 C 1.46851 * 110.99969 * 169.39968 * 19 18 16 21 21 C 1.53035 * 109.52292 * 185.83931 * 20 19 18 22 22 C 1.53118 * 109.28024 * 300.82041 * 21 20 19 23 23 C 1.52997 * 109.57714 * 177.58894 * 22 21 20 24 24 C 1.53126 * 109.16053 * 57.65458 * 22 21 20 25 25 C 1.46850 * 111.00348 * 293.60974 * 19 18 16 26 26 H 1.09000 * 109.46765 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47709 * 59.99950 * 1 2 3 28 28 H 1.09004 * 109.47097 * 299.99903 * 1 2 3 29 29 H 1.09005 * 109.47009 * 55.00064 * 4 2 1 30 30 H 1.09002 * 109.47652 * 174.99977 * 4 2 1 31 31 H 0.96997 * 120.00061 * 359.97438 * 5 4 2 32 32 H 0.97003 * 119.99807 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.47585 * 184.99948 * 14 2 1 34 34 H 1.08999 * 109.46766 * 304.99836 * 14 2 1 35 35 H 0.97000 * 119.99418 * 0.02562 * 15 14 2 36 36 H 1.08996 * 109.47478 * 293.73330 * 18 16 15 37 37 H 1.09006 * 109.47016 * 53.73573 * 18 16 15 38 38 H 1.08995 * 109.46131 * 305.85670 * 20 19 18 39 39 H 1.08999 * 109.45776 * 65.82494 * 20 19 18 40 40 H 1.09002 * 109.50500 * 180.88275 * 21 20 19 41 41 H 1.09000 * 109.50444 * 60.76440 * 21 20 19 42 42 H 1.08993 * 109.52701 * 297.75192 * 22 21 20 43 43 H 1.09002 * 109.47570 * 300.29032 * 23 22 21 44 44 H 1.08999 * 109.47047 * 60.28527 * 23 22 21 45 45 H 1.08996 * 109.47467 * 180.28949 * 23 22 21 46 46 H 1.09000 * 109.50144 * 182.40045 * 24 22 21 47 47 H 1.09001 * 109.53137 * 62.30455 * 24 22 21 48 48 H 1.08999 * 109.46272 * 294.17705 * 25 19 18 49 49 H 1.09003 * 109.45938 * 54.15458 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 0.0354 2.4423 6 6 2.0013 -0.4207 3.6856 7 1 2.5616 -1.3384 3.7865 8 6 1.6336 0.2959 4.8161 9 7 1.9692 -0.1422 6.0110 10 14 0.6637 1.8829 4.6416 11 1 -0.7898 1.5798 4.6649 12 1 0.9976 2.7934 5.7662 13 1 1.0123 2.5371 3.3548 14 6 2.0400 -0.7212 -1.2492 15 7 1.6523 0.0353 -2.4424 16 6 1.9954 -0.4137 -3.6660 17 8 2.6255 -1.4437 -3.7793 18 6 1.5971 0.3649 -4.8933 19 7 2.2117 -0.2442 -6.0804 20 6 1.6528 0.3252 -7.3132 21 6 2.2069 -0.4309 -8.5228 22 6 3.7339 -0.3186 -8.5332 23 6 4.2991 -1.1223 -9.7060 24 6 4.2876 -0.8742 -7.2181 25 6 3.6732 -0.1052 -6.0463 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 1.6055 -1.7198 1.2952 30 1 3.1264 -0.7994 1.2056 31 1 1.1490 0.8595 2.3517 32 1 1.7119 0.3584 6.8010 33 1 3.1263 -0.7995 -1.2057 34 1 1.6053 -1.7197 -1.2951 35 1 1.1487 0.8593 -2.3517 36 1 0.5122 0.3492 -4.9974 37 1 1.9380 1.3957 -4.7962 38 1 0.5667 0.2353 -7.2949 39 1 1.9288 1.3773 -7.3849 40 1 1.8040 0.0021 -9.4385 41 1 1.9195 -1.4804 -8.4589 42 1 4.0216 0.7276 -8.6363 43 1 4.0091 -2.1680 -9.6032 44 1 3.9044 -0.7262 -10.6416 45 1 5.3863 -1.0454 -9.7087 46 1 5.3713 -0.7580 -7.2016 47 1 4.0336 -1.9308 -7.1332 48 1 3.9397 0.9488 -6.1240 49 1 4.0545 -0.5080 -5.1080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753636397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:35:43 Heat of formation + Delta-G solvation = -38.753423 kcal Electronic energy + Delta-G solvation = -24086.211189 eV Core-core repulsion = 20661.733069 eV Total energy + Delta-G solvation = -3424.478120 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.23317 -38.87693 -36.96053 -34.85119 -34.43940 -32.53050 -31.13706 -30.64688 -29.55807 -27.03598 -26.19448 -24.84413 -23.49842 -22.31731 -21.83547 -20.63254 -20.00208 -19.93876 -17.70182 -16.96227 -16.61448 -15.96001 -15.56038 -15.11224 -14.88687 -14.73681 -14.48314 -14.28369 -14.23723 -13.84506 -13.49406 -13.18669 -13.08283 -12.81242 -12.70037 -12.51065 -12.32745 -12.19196 -12.10041 -11.81025 -11.48757 -11.45478 -11.05791 -11.01519 -10.78844 -10.65416 -10.63235 -10.61930 -10.52876 -10.13889 -9.77265 -9.58837 -9.06284 -8.91144 -8.59672 -7.24250 -5.77535 -3.13219 2.59123 2.93489 3.34554 3.36695 3.43028 3.68699 4.40717 4.45176 4.48450 4.57344 4.61451 4.84585 4.89987 4.93603 4.96160 5.07260 5.09271 5.13561 5.20582 5.23266 5.31224 5.33601 5.40505 5.52693 5.52908 5.64695 5.65961 5.71733 5.72946 5.80396 5.87391 5.87574 5.89698 5.91462 6.08470 6.14098 6.23055 6.41315 6.44696 6.64873 6.65404 6.74609 6.78671 7.45682 7.98976 8.20254 8.41399 9.20254 9.92317 10.12018 11.40909 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.042005 B = 0.002181 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.428520 B =12834.769282 C =13132.301080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 H 0.075 0.925 4 C 0.164 3.836 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.129 3.871 15 N -0.729 5.729 16 C 0.510 3.490 17 O -0.521 6.521 18 C 0.036 3.964 19 N -0.519 5.519 20 C 0.056 3.944 21 C -0.110 4.110 22 C -0.096 4.096 23 C -0.146 4.146 24 C -0.109 4.109 25 C 0.053 3.947 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.029 0.971 31 H 0.360 0.640 32 H 0.259 0.741 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.398 0.602 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.027 0.973 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 3.643 -32.009 32.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 H 0.093 0.907 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.005 3.995 15 N -0.382 5.382 16 C 0.295 3.705 17 O -0.396 6.396 18 C -0.095 4.095 19 N -0.244 5.244 20 C -0.072 4.072 21 C -0.148 4.148 22 C -0.114 4.114 23 C -0.203 4.203 24 C -0.147 4.147 25 C -0.075 4.075 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.193 0.807 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.232 0.768 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.045 0.955 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.291 2.228 -31.901 31.980 hybrid contribution -0.817 2.521 0.193 2.657 sum -1.107 4.749 -31.708 32.081 Atomic orbital electron populations 1.21807 0.94781 1.02292 1.01150 1.21600 0.96617 1.00502 0.94636 0.90679 1.20556 0.97202 0.94264 0.84308 1.42687 1.67919 1.27058 1.02359 1.19070 1.29526 1.07029 0.81725 0.89158 1.24679 1.00842 0.98613 0.95114 1.69705 1.51267 1.40300 0.96913 0.86546 0.80445 0.84640 0.76861 1.21060 1.21714 1.20446 1.21360 1.00176 0.95299 0.82654 1.46074 1.58247 1.27948 1.05975 1.20458 0.79833 0.86031 0.84225 1.90704 1.38798 1.23816 1.86314 1.21958 1.01404 0.96285 0.89880 1.61560 1.05475 1.57077 1.00325 1.22118 0.99457 0.96077 0.89516 1.21634 0.95031 1.01622 0.96527 1.21209 0.95358 0.99601 0.95260 1.21803 1.00698 1.00316 0.97492 1.21610 0.99168 1.00967 0.92912 1.22215 0.86737 0.97811 1.00728 0.92327 0.93632 0.91919 0.95081 0.95285 0.80658 0.93061 0.91294 0.91181 0.76771 0.87802 0.92202 0.90635 0.94948 0.91558 0.90849 0.91735 0.92495 0.92864 0.92742 0.91646 0.90754 0.95520 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.94 37.16 0.33 -1.55 16 2 C -0.11 -1.61 2.46 -90.62 -0.22 -1.83 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.16 3.09 5.65 -4.04 -0.02 3.07 16 5 N -0.75 -17.66 5.13 -59.91 -0.31 -17.97 16 6 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 7 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 8 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 9 N -0.93 -29.42 13.97 55.49 0.78 -28.64 16 10 Si 0.88 21.92 27.74 -169.99 -4.71 17.21 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 14 C 0.13 1.65 5.06 -4.04 -0.02 1.63 16 15 N -0.73 -7.68 5.28 -60.29 -0.32 -8.00 16 16 C 0.51 5.99 7.36 -10.98 -0.08 5.91 16 17 O -0.52 -8.25 14.71 5.56 0.08 -8.17 16 18 C 0.04 0.31 5.45 -4.98 -0.03 0.28 16 19 N -0.52 -5.00 4.35 -236.12 -1.03 -6.03 16 20 C 0.06 0.41 5.46 -3.83 -0.02 0.39 16 21 C -0.11 -0.76 5.38 -26.65 -0.14 -0.90 16 22 C -0.10 -0.67 2.79 -90.49 -0.25 -0.92 16 23 C -0.15 -0.89 9.20 37.16 0.34 -0.54 16 24 C -0.11 -0.94 5.38 -26.65 -0.14 -1.08 16 25 C 0.05 0.52 5.12 -3.84 -0.02 0.50 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.47 7.18 -51.93 -0.37 0.10 16 28 H 0.06 0.94 7.18 -51.93 -0.37 0.57 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.36 8.15 4.71 -40.82 -0.19 7.95 16 32 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 3.20 7.66 -40.82 -0.31 2.88 16 36 H 0.10 0.70 7.98 -51.93 -0.41 0.28 16 37 H 0.06 0.42 8.12 -51.93 -0.42 -0.01 16 38 H 0.08 0.48 8.01 -51.93 -0.42 0.06 16 39 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.09 1.10 6.06 -51.93 -0.31 0.78 16 LS Contribution 379.66 15.07 5.72 5.72 Total: -1.00 -33.47 379.66 -9.49 -42.96 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -9.17 Total: 5.05 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -0.53 Total: -2.13 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.88 Total: -60.64 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.08 Total: -8.17 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.47 -9.49 -42.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753636397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.209 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds