Wall clock time and date at job start Fri Apr 10 2020 20:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99808 * 2 1 4 4 C 1.53001 * 109.46674 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46954 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46954 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.46721 * 180.88175 * 6 5 4 8 8 C 1.46900 * 111.00171 * 67.01792 * 7 6 5 9 9 C 1.50706 * 109.46993 * 199.99350 * 8 7 6 10 10 H 1.07991 * 120.00464 * 5.24402 * 9 8 7 11 11 C 1.37879 * 119.99812 * 185.24805 * 9 8 7 12 12 N 1.31516 * 120.00198 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 120.00040 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47241 * 270.00311 * 13 11 9 15 15 H 1.48500 * 109.47071 * 30.00071 * 13 11 9 16 16 H 1.48498 * 109.47040 * 150.00304 * 13 11 9 17 17 C 1.46903 * 111.00098 * 190.96723 * 7 6 5 18 18 C 1.53008 * 109.47606 * 288.20676 * 17 7 6 19 19 C 1.52988 * 109.46604 * 164.04079 * 18 17 7 20 20 C 1.52981 * 109.51100 * 315.99085 * 19 18 17 21 21 C 1.53006 * 109.47347 * 112.92917 * 20 19 18 22 22 C 1.52994 * 109.43480 * 284.04802 * 21 20 19 23 23 C 1.52986 * 109.49182 * 75.95721 * 22 21 20 24 24 C 1.52993 * 109.50944 * 247.06863 * 23 22 21 25 25 H 1.09003 * 109.47100 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47069 * 300.00094 * 1 2 3 27 27 H 1.09000 * 109.46611 * 59.99869 * 1 2 3 28 28 H 1.09006 * 109.47176 * 60.00108 * 3 2 1 29 29 H 1.08991 * 109.47025 * 299.99591 * 3 2 1 30 30 H 1.08999 * 109.47568 * 60.00406 * 4 3 2 31 31 H 1.09004 * 109.47696 * 299.99951 * 4 3 2 32 32 H 1.09006 * 109.46828 * 60.00536 * 5 4 3 33 33 H 1.08991 * 109.47092 * 300.00191 * 5 4 3 34 34 H 1.08995 * 109.47250 * 60.88587 * 6 5 4 35 35 H 1.08999 * 109.47373 * 300.87881 * 6 5 4 36 36 H 1.08998 * 109.47180 * 79.99412 * 8 7 6 37 37 H 1.08999 * 109.47033 * 319.98709 * 8 7 6 38 38 H 0.97000 * 119.99858 * 179.97438 * 12 11 9 39 39 H 1.09005 * 109.46984 * 48.20568 * 17 7 6 40 40 H 1.09002 * 109.46980 * 284.04324 * 18 17 7 41 41 H 1.09001 * 109.47296 * 44.04085 * 18 17 7 42 42 H 1.09004 * 109.46701 * 195.97460 * 19 18 17 43 43 H 1.09009 * 109.45445 * 75.99780 * 19 18 17 44 44 H 1.09006 * 109.46867 * 352.93516 * 20 19 18 45 45 H 1.09004 * 109.47203 * 232.93462 * 20 19 18 46 46 H 1.09000 * 109.47662 * 164.05177 * 21 20 19 47 47 H 1.09008 * 109.47886 * 44.04030 * 21 20 19 48 48 H 1.09001 * 109.46860 * 315.95696 * 22 21 20 49 49 H 1.08998 * 109.46760 * 195.96229 * 22 21 20 50 50 H 1.08997 * 109.46769 * 127.05006 * 23 22 21 51 51 H 1.09002 * 109.46270 * 7.07509 * 23 22 21 52 52 H 1.09006 * 109.47308 * 284.01221 * 24 23 22 53 53 H 1.08999 * 109.47638 * 164.00458 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6830 2.4615 0.0013 7 7 6.2804 3.8033 0.0220 8 6 6.0029 4.4837 1.2940 9 6 6.1783 5.9700 1.1174 10 1 6.3837 6.3770 0.1385 11 6 6.0765 6.8103 2.2058 12 7 6.2300 8.1074 2.0519 13 14 5.7205 6.1064 3.8992 14 1 4.2521 6.0549 4.1152 15 1 6.2831 4.7354 3.9936 16 1 6.3431 6.9694 4.9349 17 6 7.7251 3.7405 -0.2370 18 6 8.4361 3.1447 0.9799 19 6 9.8485 2.7107 0.5832 20 6 9.8005 1.9820 -0.7610 21 6 10.5185 2.8196 -1.8212 22 6 9.6229 3.9874 -2.2397 23 6 9.6402 5.0602 -1.1492 24 6 8.2581 5.1506 -0.4994 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8575 0.6436 -0.8891 31 1 3.8568 0.6438 0.8909 32 1 3.8359 3.1238 0.8896 33 1 3.8365 3.1227 -0.8904 34 1 6.0064 1.9336 -0.8958 35 1 6.0029 1.9077 0.8840 36 1 6.6938 4.1243 2.0566 37 1 4.9790 4.2729 1.6029 38 1 6.1580 8.6985 2.8176 39 1 7.9109 3.1137 -1.1093 40 1 8.4943 3.8938 1.7695 41 1 7.8779 2.2803 1.3396 42 1 10.2504 2.0423 1.3447 43 1 10.4876 3.5896 0.4974 44 1 8.7620 1.8338 -1.0571 45 1 10.2933 1.0142 -0.6675 46 1 10.7351 2.1981 -2.6900 47 1 11.4508 3.2060 -1.4092 48 1 8.6029 3.6302 -2.3817 49 1 9.9924 4.4121 -3.1731 50 1 9.8976 6.0229 -1.5908 51 1 10.3805 4.7979 -0.3934 52 1 7.5766 5.6783 -1.1666 53 1 8.3347 5.6914 0.4439 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209218521.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:35:24 Heat of formation + Delta-G solvation = -51.056618 kcal Electronic energy + Delta-G solvation = -26185.887037 eV Core-core repulsion = 22864.415754 eV Total energy + Delta-G solvation = -3321.471283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 297.241 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.58598 -38.04093 -36.47548 -33.93339 -32.54115 -32.21848 -31.00129 -28.63913 -27.46842 -26.16412 -25.51028 -24.49519 -22.60205 -21.82659 -21.07481 -20.67956 -19.73202 -18.18249 -16.71497 -16.34220 -16.22515 -15.78906 -15.26533 -14.92559 -14.76724 -14.08593 -13.82422 -13.77484 -13.63990 -13.50557 -13.05800 -12.84825 -12.45576 -12.43203 -12.21691 -11.83476 -11.66312 -11.46495 -11.41039 -11.31702 -10.99601 -10.88597 -10.80705 -10.77009 -10.51409 -10.40265 -10.32423 -10.28420 -10.00565 -9.88368 -9.81927 -9.71998 -9.29311 -9.23650 -8.89494 -8.46284 -7.20956 -5.99198 -3.92406 3.28654 3.36951 3.38881 3.68338 4.45512 4.74068 4.96932 5.02759 5.06852 5.13611 5.14477 5.21362 5.27489 5.31406 5.43677 5.44625 5.48992 5.52311 5.57879 5.63373 5.64638 5.71897 5.78418 5.84184 5.87886 5.95206 6.01708 6.08786 6.14347 6.16989 6.22057 6.29941 6.34768 6.38281 6.47775 6.51360 6.55264 6.64748 6.67167 6.69771 6.78972 6.89757 7.02012 7.03015 7.09605 7.26141 7.50190 7.74398 8.01226 8.19362 8.74908 9.13394 9.63531 11.13322 Molecular weight = 297.24amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.005318 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.947379 B = 5264.353919 C = 7460.281977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.396 6.396 3 C 0.061 3.939 4 C -0.115 4.115 5 C -0.114 4.114 6 C 0.057 3.943 7 N -0.524 5.524 8 C 0.149 3.851 9 C -0.496 4.496 10 H 0.090 0.910 11 C 0.067 3.933 12 N -0.902 5.902 13 Si 0.863 3.137 14 H -0.279 1.279 15 H -0.268 1.268 16 H -0.288 1.288 17 C 0.086 3.914 18 C -0.149 4.149 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.116 4.116 22 C -0.128 4.128 23 C -0.129 4.129 24 C -0.102 4.102 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.022 0.978 36 H 0.000 1.000 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.052 0.948 47 H 0.059 0.941 48 H 0.074 0.926 49 H 0.050 0.950 50 H 0.053 0.947 51 H 0.063 0.937 52 H 0.067 0.933 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 -13.863 -5.721 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.315 6.315 3 C -0.016 4.016 4 C -0.153 4.153 5 C -0.152 4.152 6 C -0.071 4.071 7 N -0.246 5.246 8 C 0.023 3.977 9 C -0.535 4.535 10 H 0.108 0.892 11 C -0.134 4.134 12 N -0.542 5.542 13 Si 0.691 3.309 14 H -0.205 1.205 15 H -0.193 1.193 16 H -0.214 1.214 17 C -0.022 4.022 18 C -0.188 4.188 19 C -0.160 4.160 20 C -0.163 4.163 21 C -0.154 4.154 22 C -0.165 4.165 23 C -0.167 4.167 24 C -0.139 4.139 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.018 0.982 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.082 0.918 52 H 0.086 0.914 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.049 -13.570 -5.993 14.835 hybrid contribution -0.157 -0.483 1.822 1.891 sum -0.108 -14.053 -4.171 14.659 Atomic orbital electron populations 1.22710 0.81387 1.02404 0.99983 1.87855 1.19461 1.28759 1.95460 1.22616 0.94552 0.84043 1.00373 1.21501 0.92508 0.98502 1.02801 1.21531 0.95346 0.94854 1.03459 1.21978 0.94111 0.91734 0.99297 1.62245 1.10888 1.14933 1.36543 1.20385 0.95397 0.95698 0.86242 1.21238 1.46748 0.88626 0.96844 0.89223 1.24874 0.95551 0.94729 0.98228 1.69885 1.51237 1.02521 1.30579 0.87045 0.78810 0.79438 0.85569 1.20453 1.19311 1.21425 1.22081 0.86572 0.97432 0.96147 1.22286 0.95581 1.00368 1.00596 1.21805 0.98047 1.00075 0.96106 1.21810 1.01140 0.97896 0.95488 1.21695 0.98536 0.97092 0.98071 1.21838 1.00420 0.96038 0.98235 1.21946 0.99476 0.97709 0.97551 1.21839 0.93439 0.95989 1.02649 0.89910 0.94163 0.94151 0.93238 0.93166 0.91431 0.91589 0.91257 0.91024 0.92177 0.95956 0.98236 0.96216 0.92901 0.89811 0.91066 0.93227 0.93305 0.90821 0.91042 0.93109 0.92959 0.92230 0.90794 0.93088 0.92869 0.91832 0.91409 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.40 -5.16 10.70 -35.23 -0.38 -5.54 16 3 C 0.06 0.76 5.94 37.16 0.22 0.98 16 4 C -0.11 -1.51 5.58 -26.73 -0.15 -1.66 16 5 C -0.11 -1.75 5.22 -26.73 -0.14 -1.89 16 6 C 0.06 0.95 4.58 -3.83 -0.02 0.93 16 7 N -0.52 -10.28 4.45 -228.07 -1.01 -11.30 16 8 C 0.15 3.42 3.47 -4.97 -0.02 3.41 16 9 C -0.50 -13.27 7.34 -34.44 -0.25 -13.53 16 10 H 0.09 2.60 6.01 -52.49 -0.32 2.28 16 11 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 12 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 13 Si 0.86 21.20 27.58 -169.99 -4.69 16.52 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.27 -6.38 6.39 56.52 0.36 -6.02 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 C 0.09 1.51 1.58 -67.70 -0.11 1.40 16 18 C -0.15 -2.53 3.86 -26.73 -0.10 -2.64 16 19 C -0.12 -1.72 5.48 -26.75 -0.15 -1.86 16 20 C -0.13 -1.57 5.47 -26.74 -0.15 -1.72 16 21 C -0.12 -1.38 5.59 -26.73 -0.15 -1.53 16 22 C -0.13 -1.71 5.47 -26.74 -0.15 -1.85 16 23 C -0.13 -2.00 5.48 -26.74 -0.15 -2.14 16 24 C -0.10 -1.94 3.49 -26.73 -0.09 -2.03 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.18 6.26 -51.93 -0.32 0.86 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.90 7.89 -51.93 -0.41 0.49 16 35 H 0.02 0.37 6.85 -51.93 -0.36 0.02 16 36 H 0.00 0.00 4.39 -51.93 -0.23 -0.23 16 37 H 0.02 0.47 5.61 -51.93 -0.29 0.17 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.08 1.35 2.57 -51.93 -0.13 1.22 16 40 H 0.07 1.40 6.66 -51.93 -0.35 1.05 16 41 H 0.05 0.84 6.52 -51.93 -0.34 0.50 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.05 4.69 -51.92 -0.24 0.80 16 44 H 0.07 0.94 5.47 -51.93 -0.28 0.66 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.69 7.47 -51.92 -0.39 0.30 16 48 H 0.07 1.05 5.47 -51.93 -0.28 0.77 16 49 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 51 H 0.06 0.95 4.69 -51.93 -0.24 0.71 16 52 H 0.07 1.44 7.13 -51.93 -0.37 1.07 16 53 H 0.09 2.04 6.08 -51.93 -0.32 1.73 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -28.78 370.24 -9.65 -38.43 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -9.54 Total: 3.44 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -0.38 Total: -20.95 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.24 Total: -37.48 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.38 Total: -5.54 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.69 Total: 16.52 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.78 -9.65 -38.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209218521.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.628 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds