Wall clock time and date at job start Fri Apr 10 2020 20:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00138 * 2 1 4 4 H 1.48504 * 109.47247 * 270.00166 * 3 2 1 5 5 H 1.48503 * 109.47146 * 30.00035 * 3 2 1 6 6 H 1.48493 * 109.47386 * 150.00083 * 3 2 1 7 7 C 1.37881 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99914 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99918 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46762 * 179.97438 * 9 7 2 11 11 S 1.65608 * 119.99557 * 164.63205 * 10 9 7 12 12 O 1.42105 * 106.39836 * 177.75715 * 11 10 9 13 13 O 1.42101 * 106.39849 * 310.67401 * 11 10 9 14 14 C 1.76192 * 107.22112 * 64.21799 * 11 10 9 15 15 C 1.34219 * 126.50619 * 244.51816 * 14 11 10 16 16 N 1.36876 * 109.91346 * 180.02562 * 15 14 11 17 17 H 0.96999 * 125.06667 * 179.97438 * 16 15 14 18 18 C 1.37702 * 109.87562 * 359.97438 * 16 15 14 19 19 C 1.39166 * 133.41098 * 179.97438 * 18 16 15 20 20 C 1.37706 * 119.96777 * 179.97438 * 19 18 16 21 21 C 1.38836 * 120.69192 * 0.02613 * 20 19 18 22 22 C 1.37823 * 120.35513 * 359.97438 * 21 20 19 23 23 F 1.35108 * 120.19588 * 179.97438 * 22 21 20 24 24 C 1.39824 * 119.61060 * 359.65394 * 22 21 20 25 25 H 0.96993 * 119.99972 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47138 * 59.99930 * 9 7 2 27 27 H 1.08990 * 109.47423 * 299.99658 * 9 7 2 28 28 H 0.96993 * 120.00303 * 344.35478 * 10 9 7 29 29 H 1.07997 * 125.04312 * 0.03232 * 15 14 11 30 30 H 1.08004 * 120.01595 * 359.97438 * 19 18 16 31 31 H 1.08000 * 119.65321 * 179.97438 * 20 19 18 32 32 H 1.08003 * 119.82270 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 16 5.5796 -2.8950 -0.3816 12 8 5.7498 -4.2988 -0.2416 13 8 5.8508 -2.1957 -1.5886 14 6 6.5777 -2.1462 0.8623 15 6 7.4515 -1.1423 0.6880 16 7 8.0423 -0.8260 1.8814 17 1 8.7087 -0.1324 2.0068 18 6 7.5499 -1.6391 2.8777 19 6 7.8029 -1.7399 4.2424 20 6 7.1351 -2.6773 4.9984 21 6 6.2075 -3.5289 4.4139 22 6 5.9407 -3.4473 3.0642 23 9 5.0377 -4.2780 2.4985 24 6 6.6051 -2.4953 2.2849 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8745 -0.6801 -0.8911 28 1 3.3991 -3.3021 0.2259 29 1 7.6576 -0.6563 -0.2541 30 1 8.5227 -1.0832 4.7084 31 1 7.3358 -2.7514 6.0571 32 1 5.6921 -4.2593 5.0200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336167708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:37:01 Heat of formation + Delta-G solvation = -59.152172 kcal Electronic energy + Delta-G solvation = -22067.817527 eV Core-core repulsion = 18456.529471 eV Total energy + Delta-G solvation = -3611.288055 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 298.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.66290 -41.42622 -37.04126 -36.56925 -35.29298 -34.66023 -32.16341 -32.01939 -29.73883 -28.97799 -27.30206 -23.12701 -22.43629 -22.05330 -21.92255 -18.96057 -18.52846 -17.40321 -17.11451 -16.25396 -16.03163 -15.77140 -15.56326 -15.41984 -15.35484 -14.89458 -14.45042 -14.30617 -13.45778 -13.11978 -13.05766 -12.88300 -12.45901 -12.01956 -11.89533 -11.69048 -11.66552 -11.56014 -11.46609 -10.92298 -10.84082 -10.57098 -10.06065 -9.94313 -9.48261 -8.84351 -8.60480 -8.44471 -8.07131 -6.15976 -4.16136 0.71407 1.05208 1.26301 2.01313 2.73416 3.23639 3.30043 3.30601 3.49994 3.73892 4.21700 4.23230 4.32918 4.39823 4.58850 4.72402 4.94197 4.98362 5.16746 5.19925 5.37814 5.51404 5.85825 6.00702 6.11359 6.17246 6.27783 6.29000 6.82497 6.91595 6.98683 7.12220 7.45301 7.94167 8.41883 8.87403 9.42407 10.96729 Molecular weight = 298.06amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.006199 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.280868 B = 4515.687276 C = 4807.814215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.872 3.128 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.527 4.527 8 H 0.083 0.917 9 C 0.220 3.780 10 N -1.093 6.093 11 S 2.712 3.288 12 O -0.967 6.967 13 O -0.972 6.972 14 C -0.737 4.737 15 C 0.191 3.809 16 N -0.582 5.582 17 H 0.423 0.577 18 C 0.114 3.886 19 C -0.137 4.137 20 C -0.074 4.074 21 C -0.172 4.172 22 C 0.146 3.854 23 F -0.121 7.121 24 C -0.075 4.075 25 H 0.266 0.734 26 H 0.016 0.984 27 H 0.030 0.970 28 H 0.416 0.584 29 H 0.196 0.804 30 H 0.128 0.872 31 H 0.138 0.862 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.318 -1.154 8.983 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.101 0.899 9 C 0.096 3.904 10 N -0.855 5.855 11 S 2.798 3.202 12 O -0.957 6.957 13 O -0.962 6.962 14 C -0.829 4.829 15 C 0.057 3.943 16 N -0.183 5.183 17 H 0.261 0.739 18 C 0.008 3.992 19 C -0.157 4.157 20 C -0.094 4.094 21 C -0.192 4.192 22 C 0.126 3.874 23 F -0.099 7.099 24 C -0.080 4.080 25 H 0.076 0.924 26 H 0.034 0.966 27 H 0.048 0.952 28 H 0.252 0.748 29 H 0.213 0.787 30 H 0.146 0.854 31 H 0.156 0.844 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 18.657 -1.267 8.251 20.439 hybrid contribution 0.339 1.363 0.728 1.582 sum 18.996 0.096 8.979 21.012 Atomic orbital electron populations 1.69876 1.06120 1.27174 1.49912 1.24850 0.94805 0.98932 0.94347 0.86907 0.80391 0.83826 0.79014 1.19619 1.20902 1.18955 1.21076 0.88184 0.95231 1.52104 0.89864 1.19393 0.97537 0.77530 0.95985 1.55170 1.26065 1.16831 1.87437 1.01156 0.72859 0.72971 0.73254 1.93556 1.85833 1.29369 1.86956 1.93545 1.85219 1.75621 1.41783 1.32287 1.22173 1.16580 1.11869 1.21906 0.90091 0.92527 0.89753 1.42108 1.37495 1.32213 1.06525 0.73859 1.18052 0.96998 0.93738 0.90434 1.20039 1.03902 1.02261 0.89532 1.20636 0.94985 0.94004 0.99736 1.20939 1.02322 1.03391 0.92561 1.17155 0.89737 0.89407 0.91061 1.91587 1.64065 1.69065 1.85181 1.18267 0.99933 0.98370 0.91460 0.92364 0.96583 0.95205 0.74834 0.78711 0.85395 0.84426 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 20.81 27.47 -169.99 -4.67 16.14 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.53 -14.66 9.83 -34.44 -0.34 -14.99 16 8 H 0.08 2.46 7.90 -52.49 -0.41 2.04 16 9 C 0.22 5.26 5.04 -5.19 -0.03 5.23 16 10 N -1.09 -23.04 5.99 -11.66 -0.07 -23.11 16 11 S 2.71 52.29 5.76 -107.50 -0.62 51.67 16 12 O -0.97 -20.16 17.28 -57.17 -0.99 -21.15 16 13 O -0.97 -20.05 17.25 -57.17 -0.99 -21.04 16 14 C -0.74 -12.23 6.34 -37.67 -0.24 -12.47 16 15 C 0.19 2.43 11.46 -16.72 -0.19 2.23 16 16 N -0.58 -6.03 6.07 -10.65 -0.06 -6.09 16 17 H 0.42 2.50 8.96 -40.82 -0.37 2.13 16 18 C 0.11 1.46 7.27 -83.99 -0.61 0.85 16 19 C -0.14 -1.38 10.07 -39.43 -0.40 -1.78 16 20 C -0.07 -0.73 10.01 -39.55 -0.40 -1.13 16 21 C -0.17 -2.12 10.01 -39.51 -0.40 -2.52 16 22 C 0.15 2.36 7.34 -39.14 -0.29 2.07 16 23 F -0.12 -2.17 16.39 2.25 0.04 -2.13 16 24 C -0.08 -1.22 6.35 -105.08 -0.67 -1.89 16 25 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 27 H 0.03 0.71 7.19 -51.93 -0.37 0.34 16 28 H 0.42 8.44 8.54 -34.48 -0.29 8.15 16 29 H 0.20 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 31 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.14 1.41 8.06 -52.48 -0.42 0.98 16 LS Contribution 300.43 15.07 4.53 4.53 Total: -1.00 -35.88 300.43 -8.39 -44.27 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -2.68 Total: 5.27 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -3.65 Total: -22.39 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.64 Total: -55.15 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -1.97 Total: -42.19 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Atomic # 16 Polarization: 52.29 SS G_CDS: -0.62 Total: 51.67 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.88 -8.39 -44.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336167708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.886 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds