Wall clock time and date at job start Fri Apr 10 2020 20:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00138 * 2 1 4 4 H 1.48504 * 109.47247 * 270.00166 * 3 2 1 5 5 H 1.48503 * 109.47146 * 30.00035 * 3 2 1 6 6 H 1.48493 * 109.47386 * 150.00083 * 3 2 1 7 7 C 1.37881 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99914 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99918 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46762 * 179.97438 * 9 7 2 11 11 S 1.65608 * 119.99557 * 164.63205 * 10 9 7 12 12 O 1.42105 * 106.39836 * 177.75715 * 11 10 9 13 13 O 1.42101 * 106.39849 * 310.67401 * 11 10 9 14 14 C 1.76192 * 107.22112 * 64.21799 * 11 10 9 15 15 C 1.34219 * 126.50619 * 244.51816 * 14 11 10 16 16 N 1.36876 * 109.91346 * 180.02562 * 15 14 11 17 17 H 0.96999 * 125.06667 * 179.97438 * 16 15 14 18 18 C 1.37702 * 109.87562 * 359.97438 * 16 15 14 19 19 C 1.39166 * 133.41098 * 179.97438 * 18 16 15 20 20 C 1.37706 * 119.96777 * 179.97438 * 19 18 16 21 21 C 1.38836 * 120.69192 * 0.02613 * 20 19 18 22 22 C 1.37823 * 120.35513 * 359.97438 * 21 20 19 23 23 F 1.35108 * 120.19588 * 179.97438 * 22 21 20 24 24 C 1.39824 * 119.61060 * 359.65394 * 22 21 20 25 25 H 0.96993 * 119.99972 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47138 * 59.99930 * 9 7 2 27 27 H 1.08990 * 109.47423 * 299.99658 * 9 7 2 28 28 H 0.96993 * 120.00303 * 344.35478 * 10 9 7 29 29 H 1.07997 * 125.04312 * 0.03232 * 15 14 11 30 30 H 1.08004 * 120.01595 * 359.97438 * 19 18 16 31 31 H 1.08000 * 119.65321 * 179.97438 * 20 19 18 32 32 H 1.08003 * 119.82270 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 16 5.5796 -2.8950 -0.3816 12 8 5.7498 -4.2988 -0.2416 13 8 5.8508 -2.1957 -1.5886 14 6 6.5777 -2.1462 0.8623 15 6 7.4515 -1.1423 0.6880 16 7 8.0423 -0.8260 1.8814 17 1 8.7087 -0.1324 2.0068 18 6 7.5499 -1.6391 2.8777 19 6 7.8029 -1.7399 4.2424 20 6 7.1351 -2.6773 4.9984 21 6 6.2075 -3.5289 4.4139 22 6 5.9407 -3.4473 3.0642 23 9 5.0377 -4.2780 2.4985 24 6 6.6051 -2.4953 2.2849 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8745 -0.6801 -0.8911 28 1 3.3991 -3.3021 0.2259 29 1 7.6576 -0.6563 -0.2541 30 1 8.5227 -1.0832 4.7084 31 1 7.3358 -2.7514 6.0571 32 1 5.6921 -4.2593 5.0200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336167708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:37:01 Heat of formation + Delta-G solvation = -87.956438 kcal Electronic energy + Delta-G solvation = -22069.066573 eV Core-core repulsion = 18456.529471 eV Total energy + Delta-G solvation = -3612.537102 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 298.057 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.83075 -42.36143 -38.23576 -37.83343 -36.87500 -36.50794 -34.23241 -33.00222 -30.64924 -29.93325 -29.30912 -24.06603 -23.98867 -23.30572 -23.17118 -20.35253 -19.77042 -19.15093 -18.10973 -17.86284 -17.38966 -17.06838 -16.85959 -16.69164 -16.43062 -16.12120 -15.78457 -15.43107 -15.23400 -14.74819 -14.46939 -14.14425 -13.92888 -13.70824 -13.21809 -13.07352 -12.90836 -12.74071 -12.61645 -12.54695 -12.42551 -12.10953 -11.86027 -11.63385 -11.10380 -10.88828 -10.26855 -9.52672 -9.04232 -8.32929 -6.40031 -0.44295 -0.20560 0.34368 0.97020 1.35832 1.39101 1.48364 1.89122 2.22300 2.33289 2.60412 2.82799 3.01525 3.27189 3.29296 3.59362 3.89410 3.98897 4.18733 4.24625 4.37129 4.44040 4.62696 4.94079 5.01591 5.07940 5.16754 5.18717 5.26930 5.37549 5.41671 5.91701 6.16765 6.26313 6.42515 6.65365 7.22964 8.83176 Molecular weight = 298.06amu Principal moments of inertia in cm(-1) A = 0.015064 B = 0.006199 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.280868 B = 4515.687276 C = 4807.814215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.239 1.239 7 C -0.542 4.542 8 H 0.045 0.955 9 C 0.231 3.769 10 N -1.104 6.104 11 S 2.725 3.275 12 O -0.993 6.993 13 O -0.991 6.991 14 C -0.781 4.781 15 C 0.216 3.784 16 N -0.556 5.556 17 H 0.448 0.552 18 C 0.104 3.896 19 C -0.118 4.118 20 C -0.072 4.072 21 C -0.166 4.166 22 C 0.088 3.912 23 F -0.149 7.149 24 C -0.108 4.108 25 H 0.271 0.729 26 H 0.028 0.972 27 H 0.035 0.965 28 H 0.414 0.586 29 H 0.229 0.771 30 H 0.173 0.827 31 H 0.181 0.819 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.922 1.547 11.049 24.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.761 3.239 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.162 1.162 7 C -0.581 4.581 8 H 0.063 0.937 9 C 0.105 3.895 10 N -0.863 5.863 11 S 2.817 3.183 12 O -0.983 6.983 13 O -0.981 6.981 14 C -0.879 4.879 15 C 0.079 3.921 16 N -0.159 5.159 17 H 0.291 0.709 18 C -0.003 4.003 19 C -0.138 4.138 20 C -0.090 4.090 21 C -0.185 4.185 22 C 0.068 3.932 23 F -0.127 7.127 24 C -0.113 4.113 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.248 0.752 29 H 0.245 0.755 30 H 0.191 0.809 31 H 0.199 0.801 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 22.266 1.415 10.307 24.576 hybrid contribution -0.715 0.458 0.206 0.874 sum 21.551 1.873 10.513 24.051 Atomic orbital electron populations 1.70029 1.08167 1.28550 1.51234 1.25849 0.95727 1.03328 0.93634 0.85836 0.79961 0.78243 0.79862 1.18542 1.20169 1.16190 1.21346 0.90532 0.94137 1.52109 0.93723 1.19151 0.94737 0.79097 0.96476 1.55174 1.27472 1.15758 1.87890 1.00292 0.72213 0.72466 0.73334 1.93515 1.85919 1.31314 1.87572 1.93502 1.85247 1.75693 1.43679 1.31618 1.24692 1.19918 1.11639 1.22382 0.87832 0.90435 0.91453 1.42052 1.36925 1.31813 1.05153 0.70905 1.18382 0.96570 0.93535 0.91774 1.20622 1.03250 1.01741 0.88182 1.21192 0.93416 0.92680 1.01754 1.21347 1.02262 1.03705 0.91224 1.17764 0.91554 0.91029 0.92877 1.91503 1.65319 1.70101 1.85817 1.18593 1.01537 0.99645 0.91547 0.92045 0.95463 0.94677 0.75191 0.75496 0.80932 0.80128 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 2 C 0.01 0.78 5.47 84.66 0.46 1.24 16 3 Si 0.94 42.10 27.47 68.60 1.88 43.99 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 6 H -0.24 -9.62 6.54 99.48 0.65 -8.97 16 7 C -0.54 -31.28 9.83 25.60 0.25 -31.02 16 8 H 0.04 2.82 7.90 -2.91 -0.02 2.80 16 9 C 0.23 11.12 5.04 85.63 0.43 11.55 16 10 N -1.10 -48.59 5.99 -190.79 -1.14 -49.73 16 11 S 2.73 107.84 5.76 -56.49 -0.33 107.51 16 12 O -0.99 -43.59 17.28 -128.00 -2.21 -45.80 16 13 O -0.99 -41.03 17.25 -128.00 -2.21 -43.24 16 14 C -0.78 -25.29 6.34 23.51 0.15 -25.14 16 15 C 0.22 4.83 11.46 82.99 0.95 5.78 16 16 N -0.56 -9.08 6.07 -187.60 -1.14 -10.22 16 17 H 0.45 2.79 8.96 -92.71 -0.83 1.96 16 18 C 0.10 2.28 7.27 39.02 0.28 2.57 16 19 C -0.12 -1.77 10.07 22.37 0.23 -1.55 16 20 C -0.07 -1.10 10.01 22.29 0.22 -0.88 16 21 C -0.17 -3.83 10.01 22.31 0.22 -3.61 16 22 C 0.09 2.85 7.34 22.56 0.17 3.02 16 23 F -0.15 -5.74 16.39 44.97 0.74 -5.01 16 24 C -0.11 -3.41 6.35 -20.16 -0.13 -3.54 16 25 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 26 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 27 H 0.04 1.66 7.19 -2.39 -0.02 1.64 16 28 H 0.41 18.22 8.54 -96.75 -0.83 17.39 16 29 H 0.23 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 31 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 32 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -82.95 300.43 -1.38 -84.33 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -0.51 Total: 17.38 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 3.24 Total: -41.58 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -1.98 Total: -117.59 kcal Atomic # 8 Polarization: -84.62 SS G_CDS: -4.42 Total: -89.04 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.74 Total: -5.01 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.88 Total: 43.99 kcal Atomic # 16 Polarization: 107.84 SS G_CDS: -0.33 Total: 107.51 kcal Total: -82.95 -1.38 -84.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336167708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.626 kcal (2) G-P(sol) polarization free energy of solvation -82.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds