Wall clock time and date at job start Fri Apr 10 2020 20:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 119.99945 * 2 1 4 4 H 1.08003 * 120.00014 * 203.09780 * 3 2 1 5 5 C 1.38810 * 119.99919 * 23.09533 * 3 2 1 6 6 N 1.31627 * 119.99935 * 11.88805 * 5 3 2 7 7 Si 1.86800 * 120.00083 * 191.88337 * 5 3 2 8 8 H 1.48501 * 109.46941 * 90.00230 * 7 5 3 9 9 H 1.48505 * 109.47239 * 210.00252 * 7 5 3 10 10 H 1.48495 * 109.47397 * 330.00402 * 7 5 3 11 11 S 1.65598 * 120.00155 * 180.02562 * 2 1 3 12 12 O 1.42098 * 106.40158 * 336.46093 * 11 2 1 13 13 O 1.42107 * 106.40285 * 203.54022 * 11 2 1 14 14 C 1.76203 * 107.21935 * 90.00253 * 11 2 1 15 15 C 1.38789 * 119.96392 * 269.97766 * 14 11 2 16 16 C 1.36177 * 120.78265 * 180.02562 * 15 14 11 17 17 C 1.40973 * 120.42224 * 359.97438 * 16 15 14 18 18 N 1.34660 * 129.68763 * 180.02562 * 17 16 15 19 19 C 1.27945 * 117.84155 * 179.25374 * 18 17 16 20 20 S 1.70654 * 111.52022 * 0.67726 * 19 18 17 21 21 C 1.39919 * 118.50491 * 359.79774 * 17 16 15 22 22 C 1.37648 * 119.96906 * 89.99752 * 14 11 2 23 23 H 1.09003 * 109.47248 * 275.05900 * 1 2 3 24 24 H 1.09002 * 109.47374 * 35.05751 * 1 2 3 25 25 H 1.08998 * 109.47042 * 155.05749 * 1 2 3 26 26 H 0.96995 * 119.99588 * 179.97438 * 6 5 3 27 27 H 1.08005 * 119.60989 * 0.04542 * 15 14 11 28 28 H 1.08003 * 119.79449 * 180.02562 * 16 15 14 29 29 H 1.07993 * 124.23922 * 180.19249 * 19 18 17 30 30 H 1.08001 * 120.02484 * 359.95799 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1647 1.2235 -0.3669 5 6 1.5390 2.3399 0.4716 6 7 0.4020 2.2608 1.1299 7 14 2.3310 4.0050 0.1720 8 1 1.8357 4.5650 -1.1111 9 1 1.9807 4.9268 1.2824 10 1 3.8060 3.8470 0.1064 11 16 2.2930 -1.4341 -0.0006 12 8 1.4113 -2.4067 0.5433 13 8 3.5760 -1.1569 0.5439 14 6 2.5539 -1.8850 -1.6839 15 6 1.6154 -2.6640 -2.3463 16 6 1.8004 -3.0227 -3.6469 17 6 2.9523 -2.6067 -4.3451 18 7 3.3208 -2.8486 -5.6176 19 6 4.4215 -2.3414 -6.0276 20 16 5.1993 -1.4537 -4.7950 21 6 3.8920 -1.8175 -3.6730 22 6 3.6883 -1.4647 -2.3404 23 1 -0.3634 0.0906 1.0237 24 1 -0.3634 0.8412 -0.5903 25 1 -0.3633 -0.9318 -0.4334 26 1 -0.0245 3.0672 1.4597 27 1 0.7277 -2.9894 -1.8241 28 1 1.0596 -3.6290 -4.1470 29 1 4.8133 -2.4664 -7.0262 30 1 4.4179 -0.8582 -1.8245 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358801708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:34:52 Heat of formation + Delta-G solvation = 4.089533 kcal Electronic energy + Delta-G solvation = -19568.401840 eV Core-core repulsion = 16390.236232 eV Total energy + Delta-G solvation = -3178.165608 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 298.023 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.41034 -36.94821 -36.38893 -35.50320 -34.95310 -31.20919 -31.18232 -30.07267 -26.30752 -25.30513 -23.48818 -23.22564 -21.73974 -19.09803 -18.49275 -17.54532 -16.70170 -16.47272 -16.39529 -15.69791 -14.88661 -14.61048 -14.37782 -14.04943 -13.75240 -13.44172 -13.18900 -12.62676 -12.56923 -12.21002 -11.84821 -11.31844 -11.26531 -11.21610 -10.99359 -10.95038 -10.65199 -10.49458 -10.36803 -10.25210 -10.05739 -9.85325 -9.16565 -8.98048 -8.24351 -7.96564 -6.15616 -3.89031 0.07671 1.06827 1.12998 1.31000 1.55164 2.06690 3.22069 3.29076 3.31718 3.46502 3.80490 4.06015 4.39340 4.49770 4.60635 4.88982 4.98572 5.13829 5.23473 5.29945 5.52803 5.70693 5.97739 6.02872 6.18118 6.23796 6.60270 6.87210 7.15497 7.36276 7.48657 7.64560 8.43454 8.99416 9.36547 10.88100 Molecular weight = 298.02amu Principal moments of inertia in cm(-1) A = 0.017607 B = 0.005828 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.857573 B = 4803.632744 C = 5648.988499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.133 3.867 2 N -0.847 5.847 3 C -0.322 4.322 4 H 0.097 0.903 5 C 0.042 3.958 6 N -0.884 5.884 7 Si 0.916 3.084 8 H -0.280 1.280 9 H -0.284 1.284 10 H -0.270 1.270 11 S 2.674 3.326 12 O -0.976 6.976 13 O -0.960 6.960 14 C -0.650 4.650 15 C -0.021 4.021 16 C -0.087 4.087 17 C 0.113 3.887 18 N -0.471 5.471 19 C 0.070 3.930 20 S 0.109 5.891 21 C -0.206 4.206 22 C 0.044 3.956 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.024 0.976 26 H 0.264 0.736 27 H 0.150 0.850 28 H 0.140 0.860 29 H 0.205 0.795 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 -6.596 -11.886 14.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.682 5.682 3 C -0.452 4.452 4 H 0.114 0.886 5 C -0.163 4.163 6 N -0.524 5.524 7 Si 0.743 3.257 8 H -0.206 1.206 9 H -0.209 1.209 10 H -0.195 1.195 11 S 2.760 3.240 12 O -0.966 6.966 13 O -0.950 6.950 14 C -0.735 4.735 15 C -0.042 4.042 16 C -0.109 4.109 17 C -0.008 4.008 18 N -0.185 5.185 19 C -0.235 4.235 20 S 0.363 5.637 21 C -0.325 4.325 22 C 0.021 3.979 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.168 0.832 28 H 0.157 0.843 29 H 0.222 0.778 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.752 -6.765 -11.551 14.570 hybrid contribution -0.488 0.752 -0.798 1.200 sum 5.264 -6.013 -12.349 14.709 Atomic orbital electron populations 1.21172 0.79532 0.97881 1.02710 1.52694 1.12941 1.17988 1.84572 1.19096 0.98778 0.84872 1.42434 0.88567 1.25109 0.96576 0.99074 0.95494 1.70058 1.18096 1.28698 1.35550 0.86117 0.79535 0.82236 0.77836 1.20636 1.20941 1.19450 1.02363 0.73770 0.73269 0.74552 1.93499 1.66197 1.60992 1.75917 1.93498 1.41140 1.84765 1.75570 1.32042 1.01746 1.10134 1.29537 1.20473 0.97564 0.92749 0.93459 1.20407 0.95333 1.01192 0.93978 1.19400 0.96259 0.96961 0.88137 1.66306 1.15586 1.22799 1.13760 1.28206 0.93697 0.97076 1.04482 1.84025 1.22856 1.53430 1.03410 1.23915 1.00067 1.07797 1.00687 1.20189 0.95009 0.92742 0.89977 0.91675 0.91920 0.95706 0.92542 0.83247 0.84250 0.77816 0.83283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 66. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.01 8.60 59.84 0.51 3.53 16 2 N -0.85 -20.25 3.31 -66.69 -0.22 -20.47 16 3 C -0.32 -8.29 9.17 -15.06 -0.14 -8.43 16 4 H 0.10 2.39 7.68 -52.48 -0.40 1.98 16 5 C 0.04 1.10 5.12 -17.43 -0.09 1.01 16 6 N -0.88 -23.63 10.65 55.49 0.59 -23.04 16 7 Si 0.92 20.22 29.57 -169.99 -5.03 15.19 16 8 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 11 S 2.67 57.75 5.60 -107.50 -0.60 57.15 16 12 O -0.98 -21.83 16.24 -57.17 -0.93 -22.76 16 13 O -0.96 -22.83 16.37 -57.17 -0.94 -23.77 16 14 C -0.65 -11.86 5.97 -39.59 -0.24 -12.09 16 15 C -0.02 -0.33 9.42 -40.12 -0.38 -0.71 16 16 C -0.09 -1.29 10.05 -39.29 -0.39 -1.69 16 17 C 0.11 1.77 7.00 -84.96 -0.59 1.17 16 18 N -0.47 -6.59 10.57 -12.95 -0.14 -6.73 16 19 C 0.07 0.74 12.10 51.14 0.62 1.36 16 20 S 0.11 1.26 23.17 -107.50 -2.49 -1.23 16 21 C -0.21 -3.23 6.56 -38.54 -0.25 -3.48 16 22 C 0.04 0.76 9.54 -39.39 -0.38 0.38 16 23 H 0.06 1.58 7.35 -51.93 -0.38 1.20 16 24 H 0.06 1.45 7.31 -51.93 -0.38 1.07 16 25 H 0.02 0.47 7.61 -51.93 -0.39 0.08 16 26 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 27 H 0.15 2.13 7.60 -52.48 -0.40 1.73 16 28 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.21 1.22 8.06 -52.49 -0.42 0.79 16 30 H 0.15 2.48 7.61 -52.49 -0.40 2.08 16 LS Contribution 289.91 15.07 4.37 4.37 Total: -1.00 -31.63 289.91 -9.04 -40.68 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -2.34 Total: -0.45 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -1.33 Total: -18.95 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.23 Total: -50.24 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -1.86 Total: -46.53 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Atomic # 16 Polarization: 59.02 SS G_CDS: -3.09 Total: 55.93 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.63 -9.04 -40.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358801708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.767 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds