Wall clock time and date at job start Fri Apr 10 2020 20:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 119.99945 * 2 1 4 4 H 1.08003 * 120.00014 * 203.09780 * 3 2 1 5 5 C 1.38810 * 119.99919 * 23.09533 * 3 2 1 6 6 N 1.31627 * 119.99935 * 11.88805 * 5 3 2 7 7 Si 1.86800 * 120.00083 * 191.88337 * 5 3 2 8 8 H 1.48501 * 109.46941 * 90.00230 * 7 5 3 9 9 H 1.48505 * 109.47239 * 210.00252 * 7 5 3 10 10 H 1.48495 * 109.47397 * 330.00402 * 7 5 3 11 11 S 1.65598 * 120.00155 * 180.02562 * 2 1 3 12 12 O 1.42098 * 106.40158 * 336.46093 * 11 2 1 13 13 O 1.42107 * 106.40285 * 203.54022 * 11 2 1 14 14 C 1.76203 * 107.21935 * 90.00253 * 11 2 1 15 15 C 1.38789 * 119.96392 * 269.97766 * 14 11 2 16 16 C 1.36177 * 120.78265 * 180.02562 * 15 14 11 17 17 C 1.40973 * 120.42224 * 359.97438 * 16 15 14 18 18 N 1.34660 * 129.68763 * 180.02562 * 17 16 15 19 19 C 1.27945 * 117.84155 * 179.25374 * 18 17 16 20 20 S 1.70654 * 111.52022 * 0.67726 * 19 18 17 21 21 C 1.39919 * 118.50491 * 359.79774 * 17 16 15 22 22 C 1.37648 * 119.96906 * 89.99752 * 14 11 2 23 23 H 1.09003 * 109.47248 * 275.05900 * 1 2 3 24 24 H 1.09002 * 109.47374 * 35.05751 * 1 2 3 25 25 H 1.08998 * 109.47042 * 155.05749 * 1 2 3 26 26 H 0.96995 * 119.99588 * 179.97438 * 6 5 3 27 27 H 1.08005 * 119.60989 * 0.04542 * 15 14 11 28 28 H 1.08003 * 119.79449 * 180.02562 * 16 15 14 29 29 H 1.07993 * 124.23922 * 180.19249 * 19 18 17 30 30 H 1.08001 * 120.02484 * 359.95799 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1647 1.2235 -0.3669 5 6 1.5390 2.3399 0.4716 6 7 0.4020 2.2608 1.1299 7 14 2.3310 4.0050 0.1720 8 1 1.8357 4.5650 -1.1111 9 1 1.9807 4.9268 1.2824 10 1 3.8060 3.8470 0.1064 11 16 2.2930 -1.4341 -0.0006 12 8 1.4113 -2.4067 0.5433 13 8 3.5760 -1.1569 0.5439 14 6 2.5539 -1.8850 -1.6839 15 6 1.6154 -2.6640 -2.3463 16 6 1.8004 -3.0227 -3.6469 17 6 2.9523 -2.6067 -4.3451 18 7 3.3208 -2.8486 -5.6176 19 6 4.4215 -2.3414 -6.0276 20 16 5.1993 -1.4537 -4.7950 21 6 3.8920 -1.8175 -3.6730 22 6 3.6883 -1.4647 -2.3404 23 1 -0.3634 0.0906 1.0237 24 1 -0.3634 0.8412 -0.5903 25 1 -0.3633 -0.9318 -0.4334 26 1 -0.0245 3.0672 1.4597 27 1 0.7277 -2.9894 -1.8241 28 1 1.0596 -3.6290 -4.1470 29 1 4.8133 -2.4664 -7.0262 30 1 4.4179 -0.8582 -1.8245 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358801708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:34:51 Heat of formation + Delta-G solvation = -18.314341 kcal Electronic energy + Delta-G solvation = -19569.373345 eV Core-core repulsion = 16390.236232 eV Total energy + Delta-G solvation = -3179.137113 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 298.023 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51590 -38.17397 -38.08614 -37.34946 -36.74327 -33.11858 -32.40996 -31.24800 -28.18762 -26.37873 -25.36018 -24.43882 -22.88947 -20.55219 -19.99769 -19.08116 -18.35078 -18.17511 -17.59504 -16.89251 -16.37213 -16.13579 -15.94418 -15.17963 -15.10491 -14.91681 -14.68617 -14.33865 -13.79602 -13.71510 -13.31495 -13.12808 -13.07561 -13.03632 -12.71568 -12.40919 -12.24061 -12.13854 -12.04328 -11.84752 -11.34816 -11.02034 -10.83354 -10.20840 -9.86900 -9.30374 -8.09683 -5.87930 -1.05667 -0.39619 -0.07775 0.10059 0.57049 0.96033 1.47751 1.48912 1.59158 2.18484 2.39520 2.62750 2.86111 2.89635 3.19651 3.31647 3.53877 3.92694 4.01380 4.14703 4.26316 4.47904 4.54599 4.75856 4.86432 4.95306 5.04290 5.29269 5.42564 5.54481 5.77417 6.35967 6.51266 7.07354 7.41285 8.93340 Molecular weight = 298.02amu Principal moments of inertia in cm(-1) A = 0.017607 B = 0.005828 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.857573 B = 4803.632744 C = 5648.988499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.142 3.858 2 N -0.870 5.870 3 C -0.333 4.333 4 H 0.097 0.903 5 C -0.007 4.007 6 N -0.913 5.913 7 Si 0.975 3.025 8 H -0.272 1.272 9 H -0.284 1.284 10 H -0.264 1.264 11 S 2.687 3.313 12 O -0.993 6.993 13 O -0.993 6.993 14 C -0.661 4.661 15 C -0.028 4.028 16 C -0.086 4.086 17 C 0.112 3.888 18 N -0.499 5.499 19 C 0.094 3.906 20 S 0.153 5.847 21 C -0.238 4.238 22 C 0.035 3.965 23 H 0.039 0.961 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.264 0.736 27 H 0.163 0.837 28 H 0.168 0.832 29 H 0.256 0.744 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.092 -6.949 -14.959 17.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.704 5.704 3 C -0.463 4.463 4 H 0.115 0.885 5 C -0.209 4.209 6 N -0.554 5.554 7 Si 0.800 3.200 8 H -0.197 1.197 9 H -0.210 1.210 10 H -0.188 1.188 11 S 2.780 3.220 12 O -0.983 6.983 13 O -0.983 6.983 14 C -0.751 4.751 15 C -0.050 4.050 16 C -0.108 4.108 17 C -0.010 4.010 18 N -0.212 5.212 19 C -0.209 4.209 20 S 0.408 5.592 21 C -0.357 4.357 22 C 0.012 3.988 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.180 0.820 28 H 0.186 0.814 29 H 0.272 0.728 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.901 -7.108 -14.569 17.619 hybrid contribution -0.687 0.741 -0.044 1.011 sum 6.215 -6.368 -14.613 17.109 Atomic orbital electron populations 1.21020 0.79156 0.99067 1.01213 1.52727 1.13298 1.18048 1.86290 1.19371 0.99374 0.85639 1.41937 0.88504 1.25955 0.97254 1.02340 0.95352 1.70191 1.19189 1.29406 1.36576 0.85200 0.78907 0.78114 0.77804 1.19725 1.20999 1.18834 1.01647 0.72756 0.72556 0.74996 1.93460 1.66421 1.61256 1.77199 1.93442 1.42504 1.85118 1.77242 1.31172 1.03829 1.13064 1.27047 1.20644 0.97537 0.92611 0.94244 1.20692 0.95853 1.00849 0.93367 1.19761 0.96198 0.96101 0.88975 1.66415 1.17280 1.24664 1.12863 1.29157 0.91948 0.93918 1.05861 1.83952 1.20662 1.52628 1.01931 1.24172 1.02346 1.08532 1.00657 1.20215 0.94666 0.92774 0.91116 0.94223 0.92935 0.92528 0.92629 0.81966 0.81406 0.72830 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.58 8.60 127.77 1.10 7.68 16 2 N -0.87 -42.70 3.31 -364.90 -1.21 -43.91 16 3 C -0.33 -17.53 9.17 84.03 0.77 -16.76 16 4 H 0.10 4.92 7.68 -2.91 -0.02 4.90 16 5 C -0.01 -0.39 5.12 84.86 0.43 0.05 16 6 N -0.91 -50.00 10.65 21.65 0.23 -49.77 16 7 Si 0.98 41.69 29.57 68.60 2.03 43.72 16 8 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 9 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 11 S 2.69 119.16 5.60 -56.49 -0.32 118.85 16 12 O -0.99 -45.34 16.24 -128.00 -2.08 -47.42 16 13 O -0.99 -48.90 16.37 -128.00 -2.09 -50.99 16 14 C -0.66 -24.18 5.97 22.26 0.13 -24.05 16 15 C -0.03 -0.87 9.42 21.92 0.21 -0.67 16 16 C -0.09 -2.38 10.05 22.46 0.23 -2.15 16 17 C 0.11 3.22 7.00 39.79 0.28 3.50 16 18 N -0.50 -12.14 10.57 -194.75 -2.06 -14.20 16 19 C 0.09 1.56 12.10 130.81 1.58 3.14 16 20 S 0.15 3.06 23.17 -56.49 -1.31 1.75 16 21 C -0.24 -7.05 6.56 22.94 0.15 -6.90 16 22 C 0.04 1.21 9.54 22.40 0.21 1.43 16 23 H 0.04 1.99 7.35 -2.39 -0.02 1.97 16 24 H 0.05 2.50 7.31 -2.39 -0.02 2.48 16 25 H 0.06 2.19 7.61 -2.39 -0.02 2.17 16 26 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 27 H 0.16 4.47 7.60 -2.91 -0.02 4.45 16 28 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.26 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.15 4.94 7.61 -2.91 -0.02 4.91 16 Total: -1.00 -69.44 289.91 -0.53 -69.97 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 1.18 Total: 6.75 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: 5.09 Total: -34.74 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -3.03 Total: -107.87 kcal Atomic # 8 Polarization: -94.24 SS G_CDS: -4.17 Total: -98.42 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 122.22 SS G_CDS: -1.63 Total: 120.60 kcal Total: -69.44 -0.53 -69.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358801708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.652 kcal (2) G-P(sol) polarization free energy of solvation -69.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds