Wall clock time and date at job start Fri Apr 10 2020 20:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47179 * 2 1 4 4 H 1.09001 * 109.46643 * 185.17694 * 3 2 1 5 5 C 1.50697 * 109.46968 * 305.17675 * 3 2 1 6 6 H 1.08006 * 119.99685 * 119.99995 * 5 3 2 7 7 C 1.37870 * 120.00094 * 299.99912 * 5 3 2 8 8 N 1.31526 * 119.99853 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00251 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.46910 * 89.99996 * 9 7 5 11 11 H 1.48501 * 109.47300 * 210.00045 * 9 7 5 12 12 H 1.48498 * 109.46764 * 329.99869 * 9 7 5 13 13 N 1.46905 * 109.46810 * 65.17834 * 3 2 1 14 14 C 1.46903 * 110.99626 * 85.90425 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.82086 * 14 13 3 16 16 C 1.38173 * 119.61854 * 94.99901 * 15 14 13 17 17 C 1.38742 * 119.15483 * 180.02562 * 16 15 14 18 18 Br 1.89098 * 120.80430 * 179.97438 * 17 16 15 19 19 C 1.38788 * 118.39398 * 359.97438 * 17 16 15 20 20 C 1.38137 * 119.15446 * 359.97438 * 19 17 16 21 21 N 1.31882 * 119.60826 * 274.72344 * 15 14 13 22 22 H 1.09004 * 109.46681 * 54.85636 * 1 2 3 23 23 H 1.09001 * 109.47373 * 294.85412 * 1 2 3 24 24 H 1.09008 * 109.47279 * 174.85429 * 1 2 3 25 25 H 1.09001 * 109.46632 * 120.00347 * 2 1 3 26 26 H 1.08999 * 109.46880 * 239.99692 * 2 1 3 27 27 H 0.96998 * 119.99594 * 179.97438 * 8 7 5 28 28 H 1.00897 * 110.99976 * 321.94796 * 13 3 2 29 29 H 1.08994 * 109.46864 * 294.81251 * 14 13 3 30 30 H 1.08994 * 109.47486 * 54.81938 * 14 13 3 31 31 H 1.08006 * 120.42260 * 0.02562 * 16 15 14 32 32 H 1.07997 * 120.42100 * 179.97438 * 19 17 16 33 33 H 1.07995 * 119.61607 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4438 -0.0927 5 6 1.4357 2.1889 -1.1613 6 1 0.8266 3.0628 -0.9834 7 6 1.6605 1.7562 -2.4509 8 7 1.1335 2.4079 -3.4645 9 14 2.7134 0.2442 -2.7587 10 1 1.8520 -0.9654 -2.7675 11 1 3.3962 0.3752 -4.0709 12 1 3.7290 0.1209 -1.6823 13 7 1.6550 2.0979 1.2571 14 6 2.6440 1.8364 2.3114 15 6 2.2842 2.6249 3.5443 16 6 1.5433 2.0266 4.5454 17 6 1.2170 2.7616 5.6760 18 35 0.2044 1.9896 7.0741 19 6 1.6517 4.0772 5.7561 20 6 2.3897 4.6066 4.7154 21 7 2.6849 3.8762 3.6574 22 1 -0.3633 0.5916 -0.8404 23 1 -0.3634 0.4319 0.9325 24 1 -0.3634 -1.0236 -0.0922 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.2919 2.1037 -4.3718 28 1 0.7325 1.8101 1.5472 29 1 2.6489 0.7727 2.5491 30 1 3.6329 2.1357 1.9644 31 1 1.2222 0.9999 4.4491 32 1 1.4160 4.6793 6.6211 33 1 2.7315 5.6297 4.7697 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152808.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:37:24 Heat of formation + Delta-G solvation = 42.780598 kcal Electronic energy + Delta-G solvation = -16218.316679 eV Core-core repulsion = 13518.437673 eV Total energy + Delta-G solvation = -2699.879006 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 298.038 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.29971 -36.92727 -33.70353 -33.08369 -31.75075 -30.31096 -30.12058 -27.17110 -25.05355 -23.50304 -23.21175 -21.54507 -19.59204 -16.97610 -16.77470 -16.29025 -15.59277 -15.12402 -14.73950 -14.30655 -13.50683 -13.39554 -13.27950 -13.13125 -12.63623 -12.36494 -12.15670 -11.85184 -11.55855 -11.06695 -10.78548 -10.66174 -10.52685 -10.45627 -9.89878 -9.53145 -9.47086 -9.39048 -9.16405 -9.10374 -8.52648 -7.47947 -6.02870 -3.98841 0.89188 0.96081 1.23846 3.26504 3.35528 3.38929 3.61182 4.25016 4.41591 4.52943 4.75913 4.92577 5.13435 5.26526 5.34652 5.43341 5.58551 5.74646 5.81712 5.88122 5.95963 6.07560 6.17759 6.47927 6.50963 6.74598 6.77834 6.96377 7.26393 7.69546 7.85326 7.97182 8.24918 8.69729 9.09169 9.59416 11.10541 Molecular weight = 298.04amu Principal moments of inertia in cm(-1) A = 0.030398 B = 0.003708 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.889770 B = 7549.346704 C = 8018.219325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.160 4.160 3 C 0.187 3.813 4 H 0.036 0.964 5 C -0.489 4.489 6 H 0.082 0.918 7 C 0.070 3.930 8 N -0.900 5.900 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.661 5.661 14 C 0.101 3.899 15 C 0.160 3.840 16 C -0.144 4.144 17 C -0.046 4.046 18 Br -0.042 7.042 19 C -0.158 4.158 20 C 0.111 3.889 21 N -0.450 5.450 22 H 0.082 0.918 23 H 0.040 0.960 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.050 0.950 27 H 0.263 0.737 28 H 0.332 0.668 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.189 -1.493 22.774 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.199 4.199 3 C 0.079 3.921 4 H 0.054 0.946 5 C -0.528 4.528 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.224 1.224 12 H -0.195 1.195 13 N -0.292 5.292 14 C -0.029 4.029 15 C 0.021 3.979 16 C -0.167 4.167 17 C -0.134 4.134 18 Br 0.044 6.956 19 C -0.180 4.180 20 C -0.047 4.047 21 N -0.159 5.159 22 H 0.101 0.899 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.151 0.849 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.189 -0.799 22.237 22.252 hybrid contribution 0.006 -2.034 0.371 2.067 sum 0.195 -2.833 22.608 22.786 Atomic orbital electron populations 1.21657 0.95729 0.99673 1.02502 1.22524 0.97341 1.00987 0.99052 1.19741 0.96217 0.88166 0.88021 0.94618 1.20862 1.31195 1.12713 0.87983 0.90002 1.24883 0.95529 0.96613 0.96127 1.69884 1.45004 1.40212 0.98807 0.86977 0.81154 0.83860 0.76934 1.20651 1.22421 1.19499 1.60593 1.03464 1.62896 1.02248 1.20899 0.98975 0.94532 0.88466 1.21488 0.91541 0.90373 0.94489 1.22021 0.99743 1.01669 0.93240 1.22151 1.00127 0.96223 0.94878 1.96749 1.70254 1.83043 1.45563 1.22105 1.00155 0.94155 1.01565 1.22918 0.93716 0.99938 0.88145 1.67605 1.19473 1.05927 1.22879 0.89936 0.94147 0.95024 0.94842 0.93140 0.92719 0.84925 0.94322 0.89181 0.84052 0.84075 0.81897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.40 37.16 0.35 -2.34 16 2 C -0.16 -3.30 5.22 -26.73 -0.14 -3.44 16 3 C 0.19 4.27 1.93 -68.86 -0.13 4.14 16 4 H 0.04 0.85 6.76 -51.93 -0.35 0.50 16 5 C -0.49 -13.41 7.83 -34.44 -0.27 -13.68 16 6 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 7 C 0.07 1.97 5.42 -17.82 -0.10 1.87 16 8 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 9 Si 0.88 21.55 24.32 -169.99 -4.13 17.41 16 10 H -0.28 -6.67 6.92 56.52 0.39 -6.28 16 11 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.27 -6.32 6.53 56.52 0.37 -5.95 16 13 N -0.66 -13.21 6.19 -109.22 -0.68 -13.89 16 14 C 0.10 1.68 5.82 -4.97 -0.03 1.65 16 15 C 0.16 2.43 6.34 -82.59 -0.52 1.91 16 16 C -0.14 -1.86 9.51 -39.42 -0.37 -2.23 16 17 C -0.05 -0.54 6.27 -39.19 -0.25 -0.78 16 18 Br -0.04 -0.41 33.77 -68.01 -2.30 -2.71 16 19 C -0.16 -1.68 9.90 -39.41 -0.39 -2.07 16 20 C 0.11 1.33 11.18 -17.56 -0.20 1.13 16 21 N -0.45 -7.00 10.27 -9.49 -0.10 -7.10 16 22 H 0.08 1.86 6.85 -51.93 -0.36 1.50 16 23 H 0.04 0.70 6.63 -51.93 -0.34 0.35 16 24 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 25 H 0.03 0.60 7.50 -51.93 -0.39 0.21 16 26 H 0.05 1.12 3.42 -51.93 -0.18 0.94 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.33 6.28 6.69 -39.29 -0.26 6.02 16 29 H 0.04 0.57 7.43 -51.93 -0.39 0.18 16 30 H 0.09 1.57 7.92 -51.93 -0.41 1.15 16 31 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 289.79 15.07 4.37 4.37 Total: -1.00 -30.18 289.79 -8.08 -38.26 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -3.97 Total: 3.95 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -2.05 Total: -13.84 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.00 Total: -47.44 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.13 Total: 17.41 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -2.30 Total: -2.71 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.18 -8.08 -38.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152808.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.043 kcal (2) G-P(sol) polarization free energy of solvation -30.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds