Wall clock time and date at job start Fri Apr 10 2020 20:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42907 * 109.47372 * 2 1 4 4 C 1.50693 * 109.47164 * 120.00067 * 2 1 3 5 5 O 1.20827 * 120.00365 * 94.99834 * 4 2 1 6 6 O 1.34233 * 119.99944 * 274.99758 * 4 2 1 7 7 C 1.45206 * 116.99584 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46492 * 180.02562 * 7 6 4 9 9 C 1.50705 * 109.46701 * 180.02562 * 8 7 6 10 10 H 1.07992 * 120.00004 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99916 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99830 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00277 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47112 * 59.99538 * 13 11 9 15 15 H 1.48498 * 109.47373 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46784 * 299.99861 * 13 11 9 17 17 C 1.50700 * 109.47036 * 240.00097 * 2 1 3 18 18 C 1.38239 * 119.98824 * 330.29825 * 17 2 1 19 19 C 1.38212 * 120.01553 * 180.25745 * 18 17 2 20 20 C 1.38361 * 119.98341 * 359.46433 * 19 18 17 21 21 Cl 1.73597 * 120.00859 * 180.27890 * 20 19 18 22 22 C 1.38346 * 119.97306 * 0.25744 * 20 19 18 23 23 C 1.38210 * 119.98768 * 0.02562 * 22 20 19 24 24 H 1.08995 * 109.47390 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47044 * 300.00366 * 1 2 3 26 26 H 1.09005 * 109.46825 * 59.99839 * 1 2 3 27 27 H 0.96696 * 114.00075 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47460 * 299.99826 * 7 6 4 29 29 H 1.08998 * 109.47300 * 60.00612 * 7 6 4 30 30 H 1.08998 * 109.46850 * 299.99862 * 8 7 6 31 31 H 1.08998 * 109.47125 * 60.00166 * 8 7 6 32 32 H 0.97003 * 119.99719 * 180.02562 * 12 11 9 33 33 H 1.08004 * 119.99430 * 359.97438 * 18 17 2 34 34 H 1.08002 * 120.01126 * 179.75014 * 19 18 17 35 35 H 1.08002 * 120.00348 * 180.02562 * 22 20 19 36 36 H 1.08002 * 119.99295 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3197 -1.8827 1.1762 6 8 2.1606 -0.0407 2.3867 7 6 2.6496 -0.7890 3.5310 8 6 2.7279 0.1345 4.7484 9 6 3.2361 -0.6419 5.9359 10 1 3.4785 -1.6892 5.8327 11 6 3.3905 -0.0153 7.1543 12 7 3.0948 1.2600 7.2801 13 14 4.0197 -0.9778 8.6265 14 1 5.3709 -1.5153 8.3256 15 1 4.0958 -0.0815 9.8080 16 1 3.0931 -2.1016 8.9158 17 6 2.0323 -0.7104 -1.2305 18 6 1.2821 -1.7232 -1.7982 19 6 1.7447 -2.3787 -2.9236 20 6 2.9538 -2.0135 -3.4885 21 17 3.5321 -2.8315 -4.9062 22 6 3.7015 -0.9959 -2.9232 23 6 3.2405 -0.3452 -1.7944 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 2.9704 1.4236 -0.0004 28 1 1.9691 -1.6134 3.7439 29 1 3.6411 -1.1841 3.3099 30 1 3.4082 0.9591 4.5357 31 1 1.7362 0.5293 4.9693 32 1 3.2038 1.7009 8.1372 33 1 0.3363 -2.0055 -1.3596 34 1 1.1604 -3.1727 -3.3648 35 1 4.6452 -0.7102 -3.3639 36 1 3.8243 0.4489 -1.3528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815500708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:35:24 Heat of formation + Delta-G solvation = -143.311281 kcal Electronic energy + Delta-G solvation = -21269.852965 eV Core-core repulsion = 17744.039344 eV Total energy + Delta-G solvation = -3525.813621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.080 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.11187 -40.43971 -38.37933 -37.71495 -37.27546 -35.45506 -33.59867 -32.35203 -32.05914 -30.30912 -27.41416 -25.90906 -23.86766 -23.73662 -22.76750 -21.36939 -19.84098 -18.77998 -18.40038 -17.83774 -17.66061 -17.04756 -16.62435 -16.54451 -15.68284 -15.33577 -15.06126 -14.75653 -14.52563 -14.42163 -14.37060 -13.83344 -13.47385 -13.19295 -13.14704 -13.07491 -12.94037 -12.60928 -12.57664 -12.53303 -12.51764 -11.96764 -11.80844 -11.78920 -11.52161 -11.51292 -11.07514 -10.62083 -10.09488 -9.75078 -8.27914 -6.41705 -0.09056 0.23799 0.94445 1.06620 1.40067 1.43973 1.51127 1.60209 2.38076 2.54998 2.96288 3.06371 3.24294 3.55367 3.58168 3.83505 3.92923 4.17893 4.19847 4.23553 4.37678 4.54447 4.62823 4.64497 4.67987 4.88221 5.00235 5.10195 5.15326 5.21370 5.34063 5.44350 5.46827 5.66911 5.71479 6.04345 6.30097 6.64653 6.72168 7.28284 8.84414 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.027782 B = 0.002816 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.596761 B = 9939.332609 C =10372.995192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.200 3.800 3 O -0.534 6.534 4 C 0.429 3.571 5 O -0.523 6.523 6 O -0.353 6.353 7 C 0.088 3.912 8 C 0.033 3.967 9 C -0.552 4.552 10 H 0.065 0.935 11 C 0.007 3.993 12 N -0.927 5.927 13 Si 0.973 3.027 14 H -0.266 1.266 15 H -0.279 1.279 16 H -0.266 1.266 17 C -0.114 4.114 18 C -0.085 4.085 19 C -0.112 4.112 20 C -0.038 4.038 21 Cl -0.066 7.066 22 C -0.112 4.112 23 C -0.101 4.101 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.394 0.606 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.007 0.993 31 H 0.005 0.995 32 H 0.268 0.732 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.816 -4.325 -23.767 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.157 3.843 3 O -0.342 6.342 4 C 0.271 3.729 5 O -0.412 6.412 6 O -0.269 6.269 7 C 0.015 3.985 8 C -0.005 4.005 9 C -0.590 4.590 10 H 0.083 0.917 11 C -0.192 4.192 12 N -0.565 5.565 13 Si 0.796 3.204 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.190 1.190 17 C -0.115 4.115 18 C -0.103 4.103 19 C -0.131 4.131 20 C -0.064 4.064 21 Cl -0.037 7.037 22 C -0.130 4.130 23 C -0.119 4.119 24 H 0.113 0.887 25 H 0.092 0.908 26 H 0.125 0.875 27 H 0.245 0.755 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.077 0.923 33 H 0.169 0.831 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.298 -4.460 -23.742 24.381 hybrid contribution 1.106 -0.554 0.963 1.568 sum -2.192 -5.014 -22.779 23.427 Atomic orbital electron populations 1.21991 0.87600 1.04767 1.05748 1.19817 0.98024 0.81731 0.84696 1.86658 1.28768 1.22530 1.96244 1.25286 0.74708 0.86656 0.86203 1.90643 1.46380 1.18279 1.85891 1.86603 1.76231 1.44831 1.19235 1.23216 0.97983 0.94744 0.82585 1.18959 0.96637 0.94720 0.90152 1.21342 1.45561 0.97102 0.94985 0.91702 1.25961 0.95134 0.95962 1.02154 1.70092 1.48604 1.11494 1.26342 0.85387 0.79225 0.78317 0.77457 1.19027 1.20457 1.19038 1.20100 0.96707 0.98560 0.96145 1.21241 1.00583 0.93735 0.94739 1.21287 0.94955 1.00747 0.96094 1.21188 0.96460 0.97170 0.91613 1.98376 1.88612 1.78212 1.38512 1.21206 1.00783 0.95042 0.95984 1.21122 0.94873 1.00093 0.95799 0.88702 0.90831 0.87531 0.75529 0.92165 0.92150 0.97490 0.97613 0.92285 0.83051 0.82683 0.82828 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.12 71.98 0.58 -2.29 16 2 C 0.20 4.90 1.22 -12.29 -0.01 4.89 16 3 O -0.53 -12.67 12.51 -135.70 -1.70 -14.37 16 4 C 0.43 14.35 6.79 71.23 0.48 14.83 16 5 O -0.52 -19.64 15.99 21.96 0.35 -19.29 16 6 O -0.35 -14.04 9.97 -46.50 -0.46 -14.50 16 7 C 0.09 3.92 5.40 71.98 0.39 4.31 16 8 C 0.03 1.74 5.35 29.85 0.16 1.90 16 9 C -0.55 -31.20 9.11 25.60 0.23 -30.96 16 10 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 11 C 0.01 0.40 5.46 84.65 0.46 0.86 16 12 N -0.93 -55.38 13.29 21.45 0.28 -55.09 16 13 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 15 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 17 C -0.11 -2.47 4.24 -19.86 -0.08 -2.55 16 18 C -0.09 -1.62 9.11 22.26 0.20 -1.41 16 19 C -0.11 -1.95 9.83 22.29 0.22 -1.73 16 20 C -0.04 -0.69 6.32 22.32 0.14 -0.54 16 21 Cl -0.07 -1.10 28.96 -2.72 -0.08 -1.17 16 22 C -0.11 -1.96 9.83 22.29 0.22 -1.74 16 23 C -0.10 -1.92 9.32 22.26 0.21 -1.71 16 24 H 0.09 1.60 6.51 -2.39 -0.02 1.58 16 25 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.39 7.09 7.32 -74.06 -0.54 6.55 16 28 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 29 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 30 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 33 H 0.15 2.33 6.16 -2.91 -0.02 2.31 16 34 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 36 H 0.15 2.18 6.49 -2.91 -0.02 2.16 16 Total: -1.00 -68.65 329.14 4.20 -64.46 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.57 Total: 10.77 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 3.20 Total: -16.16 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.28 Total: -55.09 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -1.81 Total: -48.16 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.17 kcal Total: -68.65 4.20 -64.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815500708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.855 kcal (2) G-P(sol) polarization free energy of solvation -68.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds