Wall clock time and date at job start Fri Apr 10 2020 20:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.46835 * 2 1 4 4 C 1.34785 * 116.99502 * 179.97438 * 3 2 1 5 5 O 1.21526 * 120.00632 * 359.97438 * 4 3 2 6 6 C 1.47233 * 119.99413 * 179.97438 * 4 3 2 7 7 C 1.40192 * 120.63145 * 84.96226 * 6 4 3 8 8 Cl 1.73601 * 120.83892 * 0.24689 * 7 6 4 9 9 C 1.38527 * 118.32894 * 180.29351 * 7 6 4 10 10 C 1.38372 * 119.50081 * 359.95846 * 9 7 6 11 11 C 1.50698 * 119.36891 * 180.02562 * 10 9 7 12 12 N 1.31818 * 121.26523 * 0.03701 * 10 9 7 13 13 C 1.32489 * 121.82544 * 359.97438 * 12 10 9 14 14 N 1.38182 * 119.82759 * 180.02562 * 13 12 10 15 15 C 1.46499 * 119.99806 * 94.62845 * 14 13 12 16 16 C 1.36882 * 120.00111 * 274.61994 * 14 13 12 17 17 H 1.08000 * 120.00131 * 6.81914 * 16 14 13 18 18 C 1.38877 * 120.00047 * 186.80996 * 16 14 13 19 19 N 1.31514 * 120.00195 * 6.92579 * 18 16 14 20 20 Si 1.86806 * 120.00178 * 186.92310 * 18 16 14 21 21 H 1.48495 * 109.46765 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46698 * 120.00095 * 20 18 16 23 23 H 1.48499 * 109.47195 * 240.00474 * 20 18 16 24 24 H 1.08999 * 109.46754 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47445 * 300.00082 * 1 2 3 26 26 H 1.09005 * 109.46714 * 60.00796 * 1 2 3 27 27 H 1.08994 * 109.47445 * 239.99918 * 2 1 3 28 28 H 1.08997 * 109.47012 * 119.99271 * 2 1 3 29 29 H 1.07999 * 120.25238 * 179.97438 * 9 7 6 30 30 H 1.09000 * 109.47320 * 270.01637 * 11 10 9 31 31 H 1.09007 * 109.47124 * 30.01923 * 11 10 9 32 32 H 1.09001 * 109.47163 * 150.01805 * 11 10 9 33 33 H 1.09003 * 109.47500 * 354.20968 * 15 14 13 34 34 H 1.09003 * 109.47163 * 114.21078 * 15 14 13 35 35 H 1.09000 * 109.47136 * 234.20862 * 15 14 13 36 36 H 0.96994 * 119.99979 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3502 1.5456 0.0005 5 8 4.0905 0.5819 0.0015 6 6 3.9129 2.9062 0.0000 7 6 4.0874 3.6074 1.2013 8 17 3.6519 2.8909 2.7214 9 6 4.6151 4.8870 1.1448 10 6 4.9525 5.4313 -0.0817 11 6 5.5270 6.8233 -0.1397 12 7 4.7810 4.7558 -1.2006 13 6 4.2804 3.5291 -1.2062 14 7 4.1186 2.8583 -2.4035 15 6 5.1615 1.9455 -2.8783 16 6 2.9840 3.0466 -3.1456 17 1 2.2664 3.7991 -2.8537 18 6 2.7556 2.2700 -4.2741 19 7 3.5564 1.2651 -4.5539 20 14 1.3107 2.6528 -5.3946 21 1 0.5690 3.8243 -4.8630 22 1 1.8104 2.9612 -6.7586 23 1 0.4048 1.4777 -5.4531 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 4.7623 5.4553 2.0513 30 1 4.7178 7.5464 -0.2422 31 1 6.0815 7.0260 0.7766 32 1 6.1972 6.9045 -0.9954 33 1 6.0243 2.0028 -2.2146 34 1 4.7760 0.9259 -2.8859 35 1 5.4601 2.2286 -3.8877 36 1 3.3967 0.7225 -5.3419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166800982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:35:54 Heat of formation + Delta-G solvation = -24.126559 kcal Electronic energy + Delta-G solvation = -22673.727793 eV Core-core repulsion = 19185.375161 eV Total energy + Delta-G solvation = -3488.352632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.087 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.36601 -39.18211 -36.70829 -36.07354 -35.74979 -32.70714 -32.01691 -31.22692 -30.24117 -27.87013 -26.19389 -24.45958 -23.40339 -22.27431 -21.32490 -20.46622 -17.74127 -17.34124 -16.87081 -16.44629 -15.91099 -15.56871 -14.84188 -14.34378 -13.99395 -13.76930 -13.30491 -13.23546 -13.11033 -12.69650 -12.59654 -12.42432 -12.23034 -12.07223 -11.56383 -11.49283 -11.28662 -11.23743 -10.99417 -10.87938 -10.65345 -10.24977 -10.14384 -10.03926 -10.02789 -9.27141 -9.16563 -8.81249 -8.44646 -7.41226 -5.88255 -3.40047 1.11054 1.38588 1.99602 2.71468 3.19470 3.29368 3.35641 3.39073 3.95054 4.14269 4.55425 4.80772 5.00298 5.21789 5.26537 5.27275 5.33889 5.43341 5.53334 5.61102 5.70568 5.75528 5.91647 5.99432 6.03694 6.10839 6.21789 6.25983 6.52715 6.75574 6.92611 7.37311 7.61503 7.73368 8.11660 8.29059 8.43408 8.96943 9.61509 9.92420 11.09865 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.007677 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.802600 B = 3646.199057 C = 5088.715726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 O -0.340 6.340 4 C 0.550 3.450 5 O -0.498 6.498 6 C -0.179 4.179 7 C 0.050 3.950 8 Cl -0.060 7.060 9 C -0.199 4.199 10 C 0.166 3.834 11 C -0.102 4.102 12 N -0.492 5.492 13 C 0.472 3.528 14 N -0.549 5.549 15 C 0.171 3.829 16 C -0.259 4.259 17 H 0.081 0.919 18 C 0.012 3.988 19 N -0.902 5.902 20 Si 0.919 3.081 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.286 1.286 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.144 0.856 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.080 0.920 33 H -0.001 1.001 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.970 4.190 11.807 12.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.010 4.010 3 O -0.257 6.257 4 C 0.392 3.608 5 O -0.385 6.385 6 C -0.188 4.188 7 C 0.015 3.985 8 Cl -0.031 7.031 9 C -0.220 4.220 10 C 0.025 3.975 11 C -0.160 4.160 12 N -0.206 5.206 13 C 0.241 3.759 14 N -0.268 5.268 15 C 0.028 3.972 16 C -0.386 4.386 17 H 0.098 0.902 18 C -0.186 4.186 19 N -0.546 5.546 20 Si 0.747 3.253 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.213 1.213 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.162 0.838 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.018 0.982 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.601 3.982 10.887 11.608 hybrid contribution -0.935 -0.463 0.254 1.074 sum -1.536 3.518 11.141 11.784 Atomic orbital electron populations 1.21769 0.93008 1.02428 1.03450 1.22951 0.95078 0.80627 1.02331 1.86632 1.23606 1.31747 1.83681 1.20203 0.80807 0.88669 0.71112 1.90811 1.60575 1.41886 1.45205 1.20796 1.07796 0.95645 0.94548 1.21259 0.97986 0.93468 0.85805 1.98374 1.91325 1.83406 1.29999 1.21582 1.06105 0.94299 1.00021 1.21317 0.92658 0.96077 0.87492 1.20752 1.01211 0.90577 1.03415 1.68022 1.13736 1.09010 1.29840 1.18083 0.85723 0.85690 0.86391 1.41489 1.20300 1.47080 1.17923 1.21244 0.85808 0.94247 0.95860 1.19250 0.95953 1.17019 1.06402 0.90157 1.24923 0.98894 0.96496 0.98313 1.70182 1.38292 1.18534 1.27619 0.85963 0.81085 0.77879 0.80330 1.20015 1.21158 1.21284 0.90645 0.91912 0.91145 0.90790 0.91928 0.83797 0.90096 0.90726 0.90100 0.98223 0.91559 0.93136 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.29 37.16 0.38 -1.63 16 2 C 0.06 1.11 6.20 37.16 0.23 1.34 16 3 O -0.34 -7.15 10.23 -40.72 -0.42 -7.57 16 4 C 0.55 12.42 6.06 34.38 0.21 12.63 16 5 O -0.50 -12.01 16.90 -19.28 -0.33 -12.34 16 6 C -0.18 -3.87 5.79 -104.60 -0.61 -4.48 16 7 C 0.05 0.89 6.40 -38.74 -0.25 0.64 16 8 Cl -0.06 -0.92 28.19 -51.86 -1.46 -2.39 16 9 C -0.20 -3.01 9.53 -39.43 -0.38 -3.38 16 10 C 0.17 2.73 6.78 -82.55 -0.56 2.17 16 11 C -0.10 -1.18 10.16 36.00 0.37 -0.81 16 12 N -0.49 -10.45 10.28 -8.42 -0.09 -10.54 16 13 C 0.47 11.12 5.94 -155.16 -0.92 10.19 16 14 N -0.55 -14.51 2.41 -122.18 -0.29 -14.80 16 15 C 0.17 4.48 8.95 59.85 0.54 5.02 16 16 C -0.26 -7.17 9.78 -15.06 -0.15 -7.32 16 17 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 18 C 0.01 0.34 5.40 -17.45 -0.09 0.24 16 19 N -0.90 -25.41 9.60 55.49 0.53 -24.88 16 20 Si 0.92 21.52 29.56 -169.99 -5.02 16.50 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.00 -0.02 7.90 -51.93 -0.41 -0.43 16 34 H 0.07 1.87 6.81 -51.93 -0.35 1.52 16 35 H 0.05 1.37 7.34 -51.93 -0.38 0.99 16 36 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -31.37 331.08 -7.81 -39.18 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -4.49 Total: -2.76 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: -1.23 Total: 14.60 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.15 Total: -50.23 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.74 Total: -19.90 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.46 Total: -2.39 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.37 -7.81 -39.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.057 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds