Wall clock time and date at job start Fri Apr 10 2020 20:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.46835 * 2 1 4 4 C 1.34785 * 116.99502 * 179.97438 * 3 2 1 5 5 O 1.21526 * 120.00632 * 359.97438 * 4 3 2 6 6 C 1.47233 * 119.99413 * 179.97438 * 4 3 2 7 7 C 1.40192 * 120.63145 * 84.96226 * 6 4 3 8 8 Cl 1.73601 * 120.83892 * 0.24689 * 7 6 4 9 9 C 1.38527 * 118.32894 * 180.29351 * 7 6 4 10 10 C 1.38372 * 119.50081 * 359.95846 * 9 7 6 11 11 C 1.50698 * 119.36891 * 180.02562 * 10 9 7 12 12 N 1.31818 * 121.26523 * 0.03701 * 10 9 7 13 13 C 1.32489 * 121.82544 * 359.97438 * 12 10 9 14 14 N 1.38182 * 119.82759 * 180.02562 * 13 12 10 15 15 C 1.46499 * 119.99806 * 94.62845 * 14 13 12 16 16 C 1.36882 * 120.00111 * 274.61994 * 14 13 12 17 17 H 1.08000 * 120.00131 * 6.81914 * 16 14 13 18 18 C 1.38877 * 120.00047 * 186.80996 * 16 14 13 19 19 N 1.31514 * 120.00195 * 6.92579 * 18 16 14 20 20 Si 1.86806 * 120.00178 * 186.92310 * 18 16 14 21 21 H 1.48495 * 109.46765 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46698 * 120.00095 * 20 18 16 23 23 H 1.48499 * 109.47195 * 240.00474 * 20 18 16 24 24 H 1.08999 * 109.46754 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47445 * 300.00082 * 1 2 3 26 26 H 1.09005 * 109.46714 * 60.00796 * 1 2 3 27 27 H 1.08994 * 109.47445 * 239.99918 * 2 1 3 28 28 H 1.08997 * 109.47012 * 119.99271 * 2 1 3 29 29 H 1.07999 * 120.25238 * 179.97438 * 9 7 6 30 30 H 1.09000 * 109.47320 * 270.01637 * 11 10 9 31 31 H 1.09007 * 109.47124 * 30.01923 * 11 10 9 32 32 H 1.09001 * 109.47163 * 150.01805 * 11 10 9 33 33 H 1.09003 * 109.47500 * 354.20968 * 15 14 13 34 34 H 1.09003 * 109.47163 * 114.21078 * 15 14 13 35 35 H 1.09000 * 109.47136 * 234.20862 * 15 14 13 36 36 H 0.96994 * 119.99979 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3502 1.5456 0.0005 5 8 4.0905 0.5819 0.0015 6 6 3.9129 2.9062 0.0000 7 6 4.0874 3.6074 1.2013 8 17 3.6519 2.8909 2.7214 9 6 4.6151 4.8870 1.1448 10 6 4.9525 5.4313 -0.0817 11 6 5.5270 6.8233 -0.1397 12 7 4.7810 4.7558 -1.2006 13 6 4.2804 3.5291 -1.2062 14 7 4.1186 2.8583 -2.4035 15 6 5.1615 1.9455 -2.8783 16 6 2.9840 3.0466 -3.1456 17 1 2.2664 3.7991 -2.8537 18 6 2.7556 2.2700 -4.2741 19 7 3.5564 1.2651 -4.5539 20 14 1.3107 2.6528 -5.3946 21 1 0.5690 3.8243 -4.8630 22 1 1.8104 2.9612 -6.7586 23 1 0.4048 1.4777 -5.4531 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 4.7623 5.4553 2.0513 30 1 4.7178 7.5464 -0.2422 31 1 6.0815 7.0260 0.7766 32 1 6.1972 6.9045 -0.9954 33 1 6.0243 2.0028 -2.2146 34 1 4.7760 0.9259 -2.8859 35 1 5.4601 2.2286 -3.8877 36 1 3.3967 0.7225 -5.3419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:35:53 Heat of formation + Delta-G solvation = -41.977816 kcal Electronic energy + Delta-G solvation = -22674.501882 eV Core-core repulsion = 19185.375161 eV Total energy + Delta-G solvation = -3489.126721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.087 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.96059 -40.77502 -38.14318 -37.73409 -37.48879 -34.28013 -33.67802 -32.52297 -31.92585 -29.16164 -28.27847 -26.25371 -24.79108 -23.63966 -23.05972 -22.04250 -19.49890 -19.08873 -18.44901 -18.11383 -17.71522 -17.05631 -16.46370 -15.84258 -15.64810 -15.27400 -14.97655 -14.79172 -14.46749 -14.26905 -13.88592 -13.82724 -13.63060 -13.29149 -13.06979 -12.95764 -12.91325 -12.74610 -12.57818 -12.54480 -12.32227 -12.16862 -12.05795 -11.79640 -11.54563 -10.99528 -10.69156 -10.60263 -9.93229 -9.40803 -7.93277 -5.50369 -0.35667 -0.07508 0.62273 0.99945 1.41993 1.43795 1.54961 1.67941 2.32057 2.47043 2.87141 3.18168 3.48018 3.57815 3.86418 3.96662 4.05306 4.08480 4.13196 4.29591 4.37801 4.54254 4.62361 4.78845 4.86421 4.89577 4.96815 5.05099 5.09029 5.22640 5.36666 5.39536 5.52508 5.59362 6.10694 6.60236 6.84696 6.97189 7.62585 7.94196 9.05179 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.007677 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.802600 B = 3646.199057 C = 5088.715726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.055 3.945 3 O -0.351 6.351 4 C 0.549 3.451 5 O -0.527 6.527 6 C -0.205 4.205 7 C 0.044 3.956 8 Cl -0.034 7.034 9 C -0.168 4.168 10 C 0.166 3.834 11 C -0.099 4.099 12 N -0.521 5.521 13 C 0.441 3.559 14 N -0.569 5.569 15 C 0.196 3.804 16 C -0.270 4.270 17 H 0.073 0.927 18 C -0.038 4.038 19 N -0.932 5.932 20 Si 0.982 3.018 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.107 0.893 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.198 0.802 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.007 0.993 34 H 0.036 0.964 35 H 0.028 0.972 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.630 6.408 14.280 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.019 4.019 3 O -0.267 6.267 4 C 0.392 3.608 5 O -0.416 6.416 6 C -0.213 4.213 7 C 0.009 3.991 8 Cl -0.005 7.005 9 C -0.188 4.188 10 C 0.025 3.975 11 C -0.156 4.156 12 N -0.235 5.235 13 C 0.213 3.787 14 N -0.290 5.290 15 C 0.053 3.947 16 C -0.398 4.398 17 H 0.090 0.910 18 C -0.233 4.233 19 N -0.578 5.578 20 Si 0.808 3.192 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.209 1.209 24 H 0.126 0.874 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.215 0.785 30 H 0.118 0.882 31 H 0.135 0.865 32 H 0.093 0.907 33 H 0.026 0.974 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.271 6.240 13.418 14.853 hybrid contribution -0.700 -1.038 -0.251 1.277 sum -1.971 5.202 13.167 14.294 Atomic orbital electron populations 1.21799 0.89756 1.04587 1.03553 1.23292 0.97617 0.79065 1.01885 1.86629 1.22956 1.33862 1.83238 1.20518 0.81083 0.88980 0.70239 1.90772 1.61197 1.42917 1.46715 1.20782 1.09534 0.95380 0.95612 1.21411 0.97804 0.94194 0.85707 1.98381 1.91086 1.83339 1.27709 1.22181 1.02196 0.92921 1.01501 1.22259 0.90972 0.97636 0.86602 1.20953 1.01859 0.87398 1.05389 1.67908 1.14796 1.08268 1.32509 1.18167 0.87682 0.87007 0.85859 1.41396 1.19999 1.48219 1.19342 1.20771 0.86174 0.92829 0.94924 1.19344 0.97025 1.16702 1.06694 0.90951 1.25725 1.01553 0.96372 0.99644 1.70341 1.39960 1.19505 1.27996 0.85002 0.78147 0.77819 0.78236 1.19178 1.20952 1.20920 0.87441 0.90224 0.92507 0.93369 0.90288 0.78531 0.88176 0.86520 0.90746 0.97407 0.94512 0.95298 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 10.29 71.98 0.74 -2.88 16 2 C 0.05 1.92 6.20 71.98 0.45 2.37 16 3 O -0.35 -15.05 10.23 -56.96 -0.58 -15.63 16 4 C 0.55 25.41 6.06 70.19 0.43 25.84 16 5 O -0.53 -26.44 16.90 19.75 0.33 -26.11 16 6 C -0.20 -8.92 5.79 -19.85 -0.11 -9.03 16 7 C 0.04 1.47 6.40 22.81 0.15 1.62 16 8 Cl -0.03 -0.97 28.19 -2.72 -0.08 -1.05 16 9 C -0.17 -4.38 9.53 22.37 0.21 -4.17 16 10 C 0.17 4.95 6.78 42.59 0.29 5.24 16 11 C -0.10 -1.83 10.16 71.24 0.72 -1.11 16 12 N -0.52 -21.86 10.28 -180.55 -1.86 -23.72 16 13 C 0.44 21.19 5.94 133.69 0.79 21.98 16 14 N -0.57 -31.38 2.41 -540.45 -1.30 -32.68 16 15 C 0.20 10.94 8.95 127.77 1.14 12.08 16 16 C -0.27 -15.54 9.78 84.06 0.82 -14.72 16 17 H 0.07 4.15 7.84 -2.91 -0.02 4.12 16 18 C -0.04 -2.13 5.40 84.89 0.46 -1.68 16 19 N -0.93 -55.14 9.60 21.66 0.21 -54.93 16 20 Si 0.98 45.37 29.56 68.60 2.03 47.39 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.20 3.06 8.06 -2.91 -0.02 3.03 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.12 1.24 8.07 -2.38 -0.02 1.22 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.01 0.38 7.90 -2.39 -0.02 0.36 16 34 H 0.04 2.22 6.81 -2.39 -0.02 2.21 16 35 H 0.03 1.67 7.34 -2.39 -0.02 1.65 16 36 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -73.48 331.08 5.93 -67.55 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.10 Total: 3.64 kcal Atomic # 6 Polarization: 29.46 SS G_CDS: 6.09 Total: 35.54 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -2.95 Total: -111.34 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -0.25 Total: -41.74 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.05 kcal Total: -73.48 5.93 -67.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.572 kcal (2) G-P(sol) polarization free energy of solvation -73.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds