Wall clock time and date at job start Fri Apr 10 2020 20:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86806 * 120.00001 * 2 1 4 4 H 1.48505 * 109.46570 * 275.00230 * 3 2 1 5 5 H 1.48494 * 109.47015 * 34.99593 * 3 2 1 6 6 H 1.48492 * 109.46832 * 155.00007 * 3 2 1 7 7 C 1.40119 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99745 * 174.96348 * 7 2 1 9 9 C 1.46154 * 120.00183 * 354.96671 * 7 2 1 10 10 O 1.21739 * 120.00315 * 5.02779 * 9 7 2 11 11 N 1.34783 * 120.00086 * 185.03041 * 9 7 2 12 12 C 1.39512 * 120.00413 * 184.59929 * 11 9 7 13 13 C 1.39101 * 120.05844 * 144.85590 * 12 11 9 14 14 C 1.38067 * 120.02872 * 180.02562 * 13 12 11 15 15 C 1.38267 * 120.13510 * 359.74065 * 14 13 12 16 16 C 1.38835 * 120.10781 * 0.51896 * 15 14 13 17 17 O 1.35891 * 120.01229 * 179.76687 * 16 15 14 18 18 C 1.42902 * 117.00215 * 359.71589 * 17 16 15 19 19 C 1.50700 * 109.47248 * 180.02562 * 18 17 16 20 20 C 1.38674 * 120.41527 * 270.25100 * 19 18 17 21 21 C 1.38630 * 118.41984 * 180.24230 * 20 19 18 22 22 C 1.38227 * 119.15731 * 359.75383 * 21 20 19 23 23 N 1.31853 * 120.76809 * 359.97438 * 22 21 20 24 24 C 1.31881 * 121.72355 * 0.02562 * 23 22 21 25 25 C 1.38563 * 119.97203 * 359.47914 * 16 15 14 26 26 H 0.97007 * 119.99885 * 0.02562 * 1 2 3 27 27 H 0.97006 * 119.99760 * 4.59307 * 11 9 7 28 28 H 1.08000 * 119.98216 * 359.97438 * 13 12 11 29 29 H 1.07997 * 119.93421 * 180.02562 * 14 13 12 30 30 H 1.07997 * 119.94594 * 180.25518 * 15 14 13 31 31 H 1.09007 * 109.47217 * 59.99754 * 18 17 16 32 32 H 1.09004 * 109.47248 * 300.00633 * 18 17 16 33 33 H 1.08004 * 120.79402 * 359.97171 * 20 19 18 34 34 H 1.07991 * 120.42261 * 179.72705 * 21 20 19 35 35 H 1.08001 * 119.61753 * 180.02562 * 22 21 20 36 36 H 1.08008 * 119.62000 * 179.97438 * 24 23 22 37 37 H 1.08001 * 120.06944 * 180.23477 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.3822 2.1074 -1.3948 5 1 1.4947 2.6199 0.8029 6 1 3.5868 1.4120 0.5917 7 6 2.0069 -1.2135 0.0005 8 1 3.0839 -1.2154 -0.0816 9 6 1.2804 -2.4767 0.1122 10 8 0.0630 -2.4808 0.1124 11 7 1.9581 -3.6372 0.2148 12 6 1.2680 -4.8497 0.2247 13 6 1.8243 -5.9729 -0.3784 14 6 1.1406 -7.1724 -0.3687 15 6 -0.0954 -7.2619 0.2445 16 6 -0.6584 -6.1430 0.8434 17 8 -1.8754 -6.2320 1.4413 18 6 -2.5217 -7.5061 1.4107 19 6 -3.8499 -7.4128 2.1166 20 6 -3.9397 -7.6570 3.4787 21 6 -5.1830 -7.5646 4.0850 22 6 -6.2831 -7.2295 3.3180 23 7 -6.1593 -6.9987 2.0257 24 6 -4.9927 -7.0774 1.4158 25 6 0.0239 -4.9370 0.8364 26 1 -0.4850 0.8401 -0.0004 27 1 2.9258 -3.6294 0.2818 28 1 2.7911 -5.9065 -0.8551 29 1 1.5741 -8.0436 -0.8370 30 1 -0.6258 -8.2026 0.2538 31 1 -1.8947 -8.2438 1.9115 32 1 -2.6812 -7.8079 0.3754 33 1 -3.0627 -7.9173 4.0528 34 1 -5.2908 -7.7525 5.1429 35 1 -7.2551 -7.1550 3.7828 36 1 -4.9304 -6.8818 0.3554 37 1 -0.4109 -4.0666 1.3052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131704607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:36:52 Heat of formation + Delta-G solvation = -10.599479 kcal Electronic energy + Delta-G solvation = -22254.078630 eV Core-core repulsion = 18768.745425 eV Total energy + Delta-G solvation = -3485.333204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.46782 -39.65300 -38.18975 -36.34884 -33.44194 -33.07912 -32.40456 -31.97577 -29.81200 -28.71147 -26.83678 -26.15131 -23.76443 -22.81365 -22.17093 -21.42018 -19.79729 -17.97801 -17.35361 -17.24002 -16.74043 -16.06394 -15.47467 -15.44570 -15.23590 -15.07126 -14.51634 -14.14721 -13.94558 -13.59587 -13.27687 -13.21394 -12.75247 -12.59128 -12.41306 -12.05351 -11.73128 -11.41847 -11.26252 -11.12227 -10.81111 -10.73632 -10.54318 -10.34336 -10.02583 -9.63415 -9.28125 -9.26769 -8.88538 -7.93244 -7.61977 -7.17802 -6.34809 -4.82100 0.81665 1.08020 1.94143 1.99456 3.07034 3.14447 3.18373 3.29922 3.83665 3.99679 4.23012 4.26242 4.49741 4.56544 4.58217 4.70569 4.76256 4.80459 5.10350 5.15193 5.30315 5.41000 5.50615 5.57412 5.61774 5.72642 5.87811 5.93857 6.03745 6.14471 6.47400 6.50929 6.80201 6.87092 7.03530 7.15123 7.29052 7.72087 7.76842 7.81692 8.05901 8.16489 8.84962 9.20523 10.38104 10.56492 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.003330 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.692630 B = 8406.820073 C = 9805.288504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.086 3.914 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.541 3.459 10 O -0.556 6.556 11 N -0.698 5.698 12 C 0.226 3.774 13 C -0.207 4.207 14 C -0.065 4.065 15 C -0.253 4.253 16 C 0.141 3.859 17 O -0.308 6.308 18 C 0.107 3.893 19 C -0.143 4.143 20 C -0.052 4.052 21 C -0.178 4.178 22 C 0.103 3.897 23 N -0.487 5.487 24 C 0.125 3.875 25 C -0.161 4.161 26 H 0.272 0.728 27 H 0.395 0.605 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.791 -16.053 5.255 17.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.575 4.575 8 H 0.091 0.909 9 C 0.348 3.652 10 O -0.437 6.437 11 N -0.341 5.341 12 C 0.126 3.874 13 C -0.229 4.229 14 C -0.084 4.084 15 C -0.274 4.274 16 C 0.096 3.904 17 O -0.222 6.222 18 C 0.031 3.969 19 C -0.145 4.145 20 C -0.078 4.078 21 C -0.197 4.197 22 C -0.054 4.054 23 N -0.195 5.195 24 C -0.032 4.032 25 C -0.183 4.183 26 H 0.083 0.917 27 H 0.229 0.771 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.174 0.826 36 H 0.176 0.824 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.695 -15.440 4.851 17.157 hybrid contribution 1.757 0.364 0.395 1.837 sum -3.938 -15.077 5.247 16.442 Atomic orbital electron populations 1.69997 1.07176 1.27826 1.33562 1.25752 0.94692 1.00543 0.92539 0.86267 0.80222 0.80996 0.78823 1.19667 1.20226 1.18703 1.20834 0.94140 0.89046 1.53431 0.90932 1.18432 0.87505 0.82076 0.77203 1.90643 1.13646 1.85469 1.53943 1.44171 1.09758 1.04267 1.75943 1.17634 0.91939 0.86430 0.91388 1.20838 1.02545 0.93390 1.06104 1.20501 0.93787 0.96770 0.97365 1.20928 0.99461 0.97646 1.09319 1.18792 0.84255 0.94065 0.93285 1.86161 1.30335 1.32046 1.73669 1.21370 0.89846 0.85616 1.00062 1.20600 0.95694 1.03108 0.95060 1.21561 0.98135 0.94421 0.93665 1.22152 0.93545 1.02430 1.01610 1.22854 0.99015 0.93862 0.89684 1.67760 1.26831 1.13673 1.11269 1.22776 0.87133 0.92621 1.00670 1.20692 0.96183 0.96623 1.04752 0.91700 0.77116 0.86391 0.86486 0.86557 0.91152 0.90929 0.84545 0.84532 0.82631 0.82407 0.83196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.16 11.84 55.55 0.66 -21.50 16 2 C 0.09 2.33 5.50 -17.35 -0.10 2.23 16 3 Si 0.91 19.52 29.56 -169.99 -5.03 14.50 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.54 -14.70 9.53 -35.70 -0.34 -15.04 16 8 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 9 C 0.54 15.07 7.58 -13.08 -0.10 14.97 16 10 O -0.56 -17.50 12.46 5.15 0.06 -17.44 16 11 N -0.70 -15.73 5.31 -11.22 -0.06 -15.79 16 12 C 0.23 4.78 6.29 -83.79 -0.53 4.25 16 13 C -0.21 -3.57 9.97 -39.32 -0.39 -3.96 16 14 C -0.07 -0.99 10.03 -39.63 -0.40 -1.38 16 15 C -0.25 -3.93 9.04 -39.35 -0.36 -4.29 16 16 C 0.14 2.65 6.68 -39.24 -0.26 2.39 16 17 O -0.31 -5.40 10.12 -19.40 -0.20 -5.60 16 18 C 0.11 1.32 4.89 36.01 0.18 1.50 16 19 C -0.14 -1.72 5.53 -104.48 -0.58 -2.30 16 20 C -0.05 -0.54 9.86 -39.28 -0.39 -0.93 16 21 C -0.18 -1.64 10.11 -39.44 -0.40 -2.04 16 22 C 0.10 1.06 11.18 -17.55 -0.20 0.86 16 23 N -0.49 -6.29 10.36 -13.25 -0.14 -6.43 16 24 C 0.12 1.58 10.86 -17.55 -0.19 1.39 16 25 C -0.16 -3.60 8.63 -39.21 -0.34 -3.93 16 26 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 27 H 0.40 7.51 8.80 -40.82 -0.36 7.15 16 28 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.12 1.43 6.29 -52.49 -0.33 1.10 16 31 H 0.07 0.73 7.60 -51.93 -0.39 0.33 16 32 H 0.07 0.79 7.62 -51.93 -0.40 0.40 16 33 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 37 H 0.15 3.93 6.22 -52.49 -0.33 3.60 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -34.98 327.68 -8.03 -43.01 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -3.89 Total: 10.61 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -4.38 Total: -6.29 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.46 Total: -43.72 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.13 Total: -23.04 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.98 -8.03 -43.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131704607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.407 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds