Wall clock time and date at job start Fri Apr 10 2020 20:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31395 * 1 3 3 Si 1.86804 * 120.00103 * 2 1 4 4 H 1.48499 * 109.46856 * 269.99722 * 3 2 1 5 5 H 1.48490 * 109.46999 * 29.99971 * 3 2 1 6 6 H 1.48501 * 109.47217 * 150.00351 * 3 2 1 7 7 C 1.38958 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00226 * 183.64957 * 7 2 1 9 9 N 1.36906 * 119.99628 * 3.65473 * 7 2 1 10 10 C 1.34775 * 119.99938 * 236.56085 * 9 7 2 11 11 O 1.21722 * 120.00173 * 8.95181 * 10 9 7 12 12 C 1.46531 * 120.00196 * 188.95680 * 10 9 7 13 13 C 1.36495 * 126.65800 * 319.84180 * 12 10 9 14 14 N 1.33665 * 107.44372 * 180.02562 * 13 12 10 15 15 C 1.30634 * 109.01110 * 359.97438 * 14 13 12 16 16 C 1.50692 * 125.41304 * 179.97438 * 15 14 13 17 17 C 1.53007 * 117.49624 * 8.76907 * 16 15 14 18 18 C 1.53002 * 117.49669 * 300.11315 * 16 15 14 19 19 O 1.33705 * 109.17571 * 0.22599 * 15 14 13 20 20 C 1.39677 * 120.00275 * 56.56158 * 9 7 2 21 21 C 1.38992 * 120.08100 * 79.77191 * 20 9 7 22 22 C 1.38076 * 119.91606 * 179.79259 * 21 20 9 23 23 C 1.38307 * 120.08238 * 0.48294 * 22 21 20 24 24 C 1.38314 * 120.16204 * 359.74904 * 23 22 21 25 25 C 1.38072 * 120.08260 * 0.02562 * 24 23 22 26 26 H 0.96997 * 119.99679 * 5.01900 * 1 2 3 27 27 H 1.08003 * 126.27771 * 0.03658 * 13 12 10 28 28 H 1.08998 * 115.55247 * 154.44035 * 16 15 14 29 29 H 1.08995 * 117.50214 * 0.02562 * 17 16 15 30 30 H 1.09009 * 117.49306 * 145.02218 * 17 16 15 31 31 H 1.09001 * 117.49723 * 214.97788 * 18 16 15 32 32 H 1.08992 * 117.49885 * 359.97120 * 18 16 15 33 33 H 1.08000 * 120.03989 * 359.97438 * 21 20 9 34 34 H 1.08010 * 119.95729 * 180.23457 * 22 21 20 35 35 H 1.08005 * 119.92097 * 179.72392 * 23 22 21 36 36 H 1.08000 * 119.95830 * 179.97438 * 24 23 22 37 37 H 1.07993 * 120.04368 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0463 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0871 -1.2043 0.0601 9 7 1.3263 -2.3878 -0.0745 10 6 1.4930 -3.3234 0.8812 11 8 2.1187 -3.0573 1.8908 12 6 0.9212 -4.6609 0.7049 13 6 -0.3008 -4.9616 0.1764 14 7 -0.4304 -6.2918 0.1980 15 6 0.6501 -6.8163 0.7119 16 6 0.8961 -8.2897 0.9104 17 6 -0.1098 -9.2634 0.2930 18 6 -0.0783 -9.0539 1.8090 19 8 1.5006 -5.8379 1.0388 20 6 0.4572 -2.6268 -1.1415 21 6 0.9604 -3.0275 -2.3736 22 6 0.0978 -3.2669 -3.4249 23 6 -1.2645 -3.0987 -3.2559 24 6 -1.7685 -2.6954 -2.0326 25 6 -0.9125 -2.4586 -0.9755 26 1 -0.4849 0.8368 -0.0735 27 1 -1.0293 -4.2545 -0.1918 28 1 1.9429 -8.5930 0.9306 29 1 -0.9492 -8.8383 -0.2571 30 1 0.2753 -10.2075 -0.0927 31 1 0.3274 -9.8602 2.4201 32 1 -0.8970 -8.4908 2.2569 33 1 2.0245 -3.1544 -2.5077 34 1 0.4879 -3.5820 -4.3815 35 1 -1.9365 -3.2824 -4.0813 36 1 -2.8329 -2.5647 -1.9045 37 1 -1.3066 -2.1433 -0.0208 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888564233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:37:51 Heat of formation + Delta-G solvation = 64.777443 kcal Electronic energy + Delta-G solvation = -23923.157029 eV Core-core repulsion = 20441.092413 eV Total energy + Delta-G solvation = -3482.064616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.91642 -39.47573 -37.61502 -37.23475 -34.76408 -34.24111 -32.13950 -30.42608 -29.67512 -28.84178 -25.74108 -24.03666 -22.86973 -22.45296 -22.02155 -21.71281 -20.43950 -19.76667 -17.83152 -17.33522 -16.61798 -16.32276 -15.69448 -15.31565 -14.94064 -14.69150 -14.38286 -14.14012 -13.93418 -13.45588 -13.17356 -12.75732 -12.48616 -12.32093 -11.76488 -11.68341 -11.64496 -11.25562 -11.17107 -11.12964 -10.83665 -10.74595 -10.69050 -10.46317 -10.41279 -10.36044 -9.24884 -8.98122 -8.38562 -8.19287 -7.90755 -7.65771 -6.43620 -4.42423 1.48629 2.02405 2.09905 2.61010 2.86211 3.13471 3.19386 3.24485 3.75874 3.87128 3.96753 4.24184 4.43263 4.58960 4.71651 4.84865 4.88921 4.94821 5.40543 5.47186 5.49310 5.53265 5.61926 5.62503 5.76790 5.89582 6.03575 6.03644 6.15526 6.21489 6.28408 6.54698 6.65978 6.72377 7.03477 7.15500 7.36339 7.40709 7.58648 7.99747 8.13126 8.31926 8.86753 9.01562 9.63035 10.54983 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.005372 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.960423 B = 5210.832541 C = 6206.018401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.056 3.944 3 Si 0.927 3.073 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.319 4.319 8 H 0.091 0.909 9 N -0.390 5.390 10 C 0.552 3.448 11 O -0.538 6.538 12 C -0.064 4.064 13 C -0.007 4.007 14 N -0.479 5.479 15 C 0.207 3.793 16 C -0.076 4.076 17 C -0.147 4.147 18 C -0.157 4.157 19 O -0.176 6.176 20 C 0.167 3.833 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.128 4.128 25 C -0.080 4.080 26 H 0.273 0.727 27 H 0.200 0.800 28 H 0.131 0.869 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 -11.848 -4.289 13.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.153 4.153 3 Si 0.753 3.247 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.445 4.445 8 H 0.109 0.891 9 N -0.108 5.108 10 C 0.339 3.661 11 O -0.417 6.417 12 C -0.121 4.121 13 C -0.149 4.149 14 N -0.209 5.209 15 C 0.002 3.998 16 C -0.095 4.095 17 C -0.184 4.184 18 C -0.195 4.195 19 O -0.060 6.060 20 C 0.077 3.923 21 C -0.141 4.141 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.147 4.147 25 C -0.100 4.100 26 H 0.083 0.917 27 H 0.216 0.784 28 H 0.149 0.851 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.462 -11.912 -3.847 12.987 hybrid contribution 0.882 1.525 0.095 1.765 sum -2.579 -10.386 -3.752 11.340 Atomic orbital electron populations 1.69829 1.06198 1.28468 1.44188 1.25721 0.95545 1.00266 0.93805 0.85919 0.79765 0.80546 0.78503 1.20048 1.20544 1.18948 1.19285 0.91212 0.80473 1.53549 0.89132 1.40489 1.39126 1.14717 1.16479 1.17091 0.83624 0.81453 0.83911 1.90718 1.43249 1.80701 1.27056 1.23712 0.96105 0.86628 1.05622 1.24412 0.97368 0.91881 1.01215 1.70179 1.23507 1.08413 1.18757 1.25169 0.85160 0.91534 0.97971 1.19993 0.98650 0.81829 1.09032 1.23085 1.00606 0.98743 0.95950 1.23126 1.00845 1.01735 0.93797 1.84459 1.43641 1.14511 1.63413 1.17913 0.89778 0.95747 0.88854 1.21272 0.99673 1.00259 0.92917 1.20811 0.93472 1.02025 0.98040 1.20942 0.95121 1.01983 0.97162 1.20957 0.99174 1.01301 0.93259 1.21339 0.92686 0.95930 1.00006 0.91714 0.78388 0.85083 0.87019 0.87677 0.87601 0.88007 0.86649 0.86892 0.87051 0.86646 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.18 10.96 55.50 0.61 -21.58 16 2 C 0.06 1.43 5.36 -17.47 -0.09 1.34 16 3 Si 0.93 20.21 29.56 -169.99 -5.02 15.19 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 7 C -0.32 -8.61 8.64 -15.02 -0.13 -8.74 16 8 H 0.09 2.46 7.83 -52.49 -0.41 2.05 16 9 N -0.39 -9.96 2.43 -60.40 -0.15 -10.11 16 10 C 0.55 14.45 7.51 -12.92 -0.10 14.35 16 11 O -0.54 -15.76 17.10 5.17 0.09 -15.67 16 12 C -0.06 -1.47 6.76 -36.87 -0.25 -1.71 16 13 C -0.01 -0.15 10.32 -17.38 -0.18 -0.33 16 14 N -0.48 -9.01 10.79 -10.77 -0.12 -9.12 16 15 C 0.21 3.66 7.86 -12.79 -0.10 3.56 16 16 C -0.08 -0.94 6.33 -91.77 -0.58 -1.52 16 17 C -0.15 -1.44 10.13 -26.69 -0.27 -1.71 16 18 C -0.16 -1.56 10.24 -26.69 -0.27 -1.84 16 19 O -0.18 -3.72 10.79 4.27 0.05 -3.68 16 20 C 0.17 3.76 2.64 -83.72 -0.22 3.54 16 21 C -0.12 -2.45 9.97 -39.36 -0.39 -2.84 16 22 C -0.12 -2.12 10.04 -39.62 -0.40 -2.52 16 23 C -0.13 -2.17 10.04 -39.53 -0.40 -2.56 16 24 C -0.13 -2.24 9.81 -39.61 -0.39 -2.63 16 25 C -0.08 -1.67 5.16 -39.36 -0.20 -1.87 16 26 H 0.27 6.70 8.32 -40.82 -0.34 6.36 16 27 H 0.20 3.95 4.13 -52.48 -0.22 3.73 16 28 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.11 1.25 7.87 -51.93 -0.41 0.84 16 30 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 34 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 36 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.13 2.96 7.61 -52.49 -0.40 2.56 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -31.27 324.30 -7.58 -38.86 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -3.95 Total: 6.71 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -3.97 Total: -5.49 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.35 Total: -40.81 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.13 Total: -19.35 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.27 -7.58 -38.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888564233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.633 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds