Wall clock time and date at job start Fri Apr 10 2020 20:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38481 * 119.38090 * 2 1 4 4 C 1.38379 * 119.53370 * 180.02562 * 3 2 1 5 5 C 1.39916 * 118.38167 * 359.97438 * 4 3 2 6 6 C 1.47570 * 120.61545 * 180.02562 * 5 4 3 7 7 N 1.34781 * 120.00002 * 0.87408 * 6 5 4 8 8 O 1.21589 * 120.00016 * 180.87365 * 6 5 4 9 9 C 1.40698 * 118.76943 * 0.28311 * 5 4 3 10 10 C 1.47961 * 119.84091 * 179.70103 * 9 5 4 11 11 C 1.39467 * 120.17669 * 87.17632 * 10 9 5 12 12 C 1.37928 * 119.93198 * 180.02562 * 11 10 9 13 13 C 1.38512 * 120.29508 * 359.97438 * 12 11 10 14 14 C 1.38077 * 120.35713 * 0.02562 * 13 12 11 15 15 C 1.38783 * 120.06050 * 359.71884 * 14 13 12 16 16 O 1.35611 * 120.14272 * 180.30377 * 15 14 13 17 17 C 1.34803 * 117.00405 * 353.81636 * 16 15 14 18 18 H 1.08007 * 119.99699 * 354.90225 * 17 16 15 19 19 C 1.38673 * 120.00348 * 174.89163 * 17 16 15 20 20 N 1.31543 * 119.99624 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00220 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46931 * 60.00472 * 21 19 17 23 23 H 1.48501 * 109.46755 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47090 * 300.00631 * 21 19 17 25 25 N 1.31725 * 119.37646 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47392 * 89.99743 * 1 2 3 27 27 H 1.08999 * 109.46845 * 210.00138 * 1 2 3 28 28 H 1.08999 * 109.46306 * 329.99404 * 1 2 3 29 29 H 1.08001 * 120.23503 * 0.02761 * 3 2 1 30 30 H 1.08003 * 120.80836 * 179.97438 * 4 3 2 31 31 H 0.97002 * 119.99539 * 179.97438 * 7 6 5 32 32 H 0.96994 * 120.00156 * 359.72528 * 7 6 5 33 33 H 1.08002 * 120.03286 * 359.97438 * 11 10 9 34 34 H 1.08001 * 119.85607 * 179.97438 * 12 11 10 35 35 H 1.07997 * 119.81986 * 179.97438 * 13 12 11 36 36 H 1.08006 * 119.96600 * 180.02562 * 14 13 12 37 37 H 0.97002 * 119.99875 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1865 1.2067 0.0000 4 6 3.5703 1.2104 -0.0005 5 6 4.2386 -0.0188 -0.0005 6 6 5.7134 -0.0724 -0.0005 7 7 6.4292 1.0695 0.0173 8 8 6.2827 -1.1467 -0.0165 9 6 3.4786 -1.2029 -0.0060 10 6 4.1610 -2.5157 -0.0128 11 6 4.5375 -3.1163 1.1882 12 6 5.1738 -4.3400 1.1760 13 6 5.4408 -4.9767 -0.0248 14 6 5.0733 -4.3931 -1.2210 15 6 4.4276 -3.1646 -1.2256 16 8 4.0604 -2.5928 -2.3992 17 6 4.4638 -3.2043 -3.5307 18 1 5.1203 -4.0604 -3.4773 19 6 4.0359 -2.7346 -4.7633 20 7 3.2366 -1.6919 -4.8283 21 14 4.5943 -3.5826 -6.3312 22 1 4.1495 -4.9993 -6.3132 23 1 4.0022 -2.8923 -7.5051 24 1 6.0756 -3.5300 -6.4218 25 7 2.1532 -1.1479 -0.0005 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3632 0.8900 0.5139 29 1 1.6402 2.1384 0.0004 30 1 4.1209 2.1395 -0.0010 31 1 7.3986 1.0341 0.0177 32 1 5.9751 1.9265 0.0261 33 1 4.3318 -2.6234 2.1269 34 1 5.4653 -4.8038 2.1068 35 1 5.9398 -5.9345 -0.0255 36 1 5.2842 -4.8954 -2.1536 37 1 2.9375 -1.3630 -5.6905 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243583607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:37:29 Heat of formation + Delta-G solvation = 0.965087 kcal Electronic energy + Delta-G solvation = -23960.988882 eV Core-core repulsion = 20476.157155 eV Total energy + Delta-G solvation = -3484.831727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.36504 -38.62166 -38.34871 -36.18388 -33.73183 -32.94885 -32.17494 -31.98609 -29.67922 -28.69419 -27.49023 -25.25383 -23.75673 -22.73869 -21.38298 -20.80494 -20.27833 -17.87037 -17.80742 -17.05928 -16.67688 -15.49961 -15.40242 -14.80848 -14.57511 -14.47201 -14.13821 -14.05871 -13.77208 -13.49609 -13.38691 -12.86354 -12.77252 -12.50722 -12.06519 -11.94643 -11.89062 -11.59512 -11.21124 -10.77856 -10.69382 -10.63994 -10.38988 -9.74939 -9.55244 -9.38818 -9.32327 -9.08221 -8.73577 -8.46834 -7.82593 -7.02632 -6.35819 -3.93382 1.02969 1.53598 2.27020 2.59142 3.17676 3.19604 3.20985 3.30252 3.75233 4.03728 4.19368 4.49956 4.69443 4.86302 5.03169 5.06720 5.22878 5.32003 5.37525 5.61571 5.68058 5.78056 5.79795 5.85416 5.99338 6.14679 6.16870 6.26158 6.35569 6.45173 6.82509 6.87031 6.98836 7.06163 7.18908 7.35667 7.49842 7.52331 7.57429 7.96195 8.08717 8.38202 8.62504 9.09963 9.82379 10.82238 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.011221 B = 0.006762 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.795514 B = 4139.857465 C = 4921.914588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.155 3.845 3 C -0.193 4.193 4 C -0.042 4.042 5 C -0.187 4.187 6 C 0.564 3.436 7 N -0.859 5.859 8 O -0.501 6.501 9 C 0.277 3.723 10 C -0.105 4.105 11 C -0.042 4.042 12 C -0.208 4.208 13 C -0.068 4.068 14 C -0.229 4.229 15 C 0.186 3.814 16 O -0.174 6.174 17 C -0.387 4.387 18 H 0.090 0.910 19 C 0.040 3.960 20 N -0.864 5.864 21 Si 0.938 3.062 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.271 1.271 25 N -0.471 5.471 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.402 0.598 32 H 0.394 0.606 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.102 7.516 9.998 12.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.016 3.984 3 C -0.213 4.213 4 C -0.068 4.068 5 C -0.193 4.193 6 C 0.349 3.651 7 N -0.424 5.424 8 O -0.375 6.375 9 C 0.139 3.861 10 C -0.108 4.108 11 C -0.061 4.061 12 C -0.227 4.227 13 C -0.087 4.087 14 C -0.248 4.248 15 C 0.131 3.869 16 O -0.077 6.077 17 C -0.464 4.464 18 H 0.107 0.893 19 C -0.164 4.164 20 N -0.499 5.499 21 Si 0.762 3.238 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.196 1.196 25 N -0.180 5.180 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.232 0.768 32 H 0.223 0.777 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.145 0.855 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.647 6.289 9.737 11.609 hybrid contribution 1.012 0.921 -1.011 1.701 sum 0.365 7.209 8.726 11.325 Atomic orbital electron populations 1.20763 0.88862 1.03123 1.03496 1.21489 0.97168 0.88329 0.91396 1.21775 0.94448 0.99210 1.05843 1.21542 0.94648 0.96663 0.93990 1.20832 0.94291 0.94610 1.09556 1.17943 0.86896 0.84161 0.76114 1.43712 1.10557 1.08388 1.79778 1.90932 1.71563 1.28087 1.46932 1.19712 0.87701 0.92062 0.86590 1.17148 1.07981 0.93754 0.91871 1.20363 0.96361 0.94648 0.94693 1.20373 1.07873 0.97441 0.97025 1.20747 0.97438 0.98165 0.92321 1.21024 1.07777 0.97452 0.98585 1.19077 0.91106 0.90352 0.86350 1.83943 1.65669 1.47472 1.10575 1.21257 1.29002 1.14516 0.81625 0.89296 1.25229 0.96277 0.96529 0.98360 1.70040 1.31606 1.22517 1.25771 0.85836 0.78955 0.79112 0.79864 1.19500 1.20379 1.19589 1.67843 1.08840 1.28497 1.12818 0.89892 0.90344 0.90869 0.84697 0.84929 0.76770 0.77736 0.87745 0.87616 0.87585 0.85542 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.16 36.01 0.37 -0.99 16 2 C 0.16 2.65 6.78 -82.55 -0.56 2.09 16 3 C -0.19 -2.77 9.71 -39.44 -0.38 -3.15 16 4 C -0.04 -0.63 9.64 -38.90 -0.37 -1.00 16 5 C -0.19 -3.60 5.91 -104.53 -0.62 -4.22 16 6 C 0.56 10.59 8.02 -12.45 -0.10 10.49 16 7 N -0.86 -10.95 8.83 30.47 0.27 -10.68 16 8 O -0.50 -11.45 14.54 5.29 0.08 -11.37 16 9 C 0.28 6.19 5.75 -82.60 -0.47 5.71 16 10 C -0.11 -2.51 3.32 -104.75 -0.35 -2.86 16 11 C -0.04 -0.87 9.14 -39.24 -0.36 -1.23 16 12 C -0.21 -4.10 10.03 -39.59 -0.40 -4.49 16 13 C -0.07 -1.40 10.03 -39.54 -0.40 -1.80 16 14 C -0.23 -5.51 9.12 -39.44 -0.36 -5.87 16 15 C 0.19 4.94 6.37 -38.68 -0.25 4.69 16 16 O -0.17 -5.24 9.21 0.55 0.01 -5.24 16 17 C -0.39 -11.41 9.44 30.89 0.29 -11.12 16 18 H 0.09 2.45 5.30 -52.48 -0.28 2.17 16 19 C 0.04 1.13 5.49 -17.51 -0.10 1.04 16 20 N -0.86 -26.05 13.67 55.48 0.76 -25.29 16 21 Si 0.94 21.39 29.55 -169.99 -5.02 16.37 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 N -0.47 -10.08 10.20 -5.77 -0.06 -10.14 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 29 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.13 1.33 6.52 -52.48 -0.34 0.99 16 31 H 0.40 4.44 8.93 -40.82 -0.36 4.08 16 32 H 0.39 3.64 6.93 -40.82 -0.28 3.36 16 33 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.13 2.99 5.72 -52.48 -0.30 2.69 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 324.53 15.07 4.89 4.89 Total: -1.00 -37.25 324.53 -6.80 -44.04 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -3.66 Total: 10.13 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -4.06 Total: -12.71 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.97 Total: -46.10 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.08 Total: -16.61 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -37.25 -6.80 -44.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243583607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.009 kcal (2) G-P(sol) polarization free energy of solvation -37.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds